BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494183
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37930.1 | Symbols: | Protein with RING/U-box and TRAF-like... 1428 0.0
> AT5G37930.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:15102200-15103669 REVERSE LENGTH=1107
Length=1107
Score = 1428 bits (773), Expect = 0.0
Identities = 979/1076 (91%), Gaps = 23/1076 (2%)
Strand=Plus/Plus
Query 2 ATGGCGAGATTCTCAGTTTGTGGAGGAGACGACGGAGAAGGACCTAGCAACAACAACAAT 61
|||||||||||||||||||| ||||||||||||||||||||||| | | |||||||||
Sbjct 19 ATGGCGAGATTCTCAGTTTGCGGAGGAGACGACGGAGAAGGACC-A--AGTAACAACAAT 75
Query 62 CATCAATCCCGGAAAAGGCAACGACTTCCTTCAATCGATGAAAacgaagaagacgccgaa 121
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 76 CACCAATCCCGGAAAAGGCAACGACTTCCTTCAATCGATGAAAATGAAGAAGACGCCGAG 135
Query 122 acctccgacgccggaagttccggtgaagaagaagacgaagaagaaACTCAAAATCGAGGA 181
|||||||||||||||||||||||| |||||||||||||| |||||||| |||| ||||
Sbjct 136 ACCTCCGACGCCGGAAGTTCCGGT---GAAGAAGACGAAGACGAAACTCAGAATCAAGGA 192
Query 182 ATGAGAACGGAATCTGAAGATCGAGGATCAACGAGCGATGATGATAGCGATCGTGAAGTT 241
|||||| | |||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 193 ATGAGACCAGAATCTGAGGATCGAGGATCAACGAGC---GATGATAGCGATCGTGAAGTT 249
Query 242 TTGATAGAAGAGAGACGATTTGGTAAATTCGTAAATAGTCAGAG------TTCGAGCAAA 295
|||| || |||||||||||||||||||| |||||||||||||| ||| ||||||
Sbjct 250 GTGATTGAGGAGAGACGATTTGGTAAATTTGTAAATAGTCAGAGTTCTTCTTCTAGCAAA 309
Query 296 GATTCGCCTCTTTCTGTGACGTTATTGGATCCAGATGTTCTTGATTGTCCTATTTGTTGC 355
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GATTCGCCTCTTTCTGTAACGTTATTGGATCCAGATGTTCTTGATTGTCCTATTTGTTGC 369
Query 356 GAGCCATTGAAGATTCCAATCTTTCAGTGTGATAATGGTCATTTGGCGTGTACTTTGTGC 415
||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct 370 GAGCCATTGAAGATTCCTATCTTTCAGTGTGATAATGGTCATCTGGCTTGTACTTTGTGC 429
Query 416 TGCACAAAAGTGAGGAACCGATGCCCGTCGTGTACATTACCCATTGGTTACGTTCGTTGC 475
||||| |||||||||||| |||||||||||||||||||||| || ||||| |||||||||
Sbjct 430 TGCACCAAAGTGAGGAACAGATGCCCGTCGTGTACATTACCGATAGGTTATGTTCGTTGC 489
Query 476 AGAGCGATGGAGAAGGTTATAGAAACATCTAGAGTCTCATGTCCAAATGCTAAATACGGG 535
||||| |||||||||||||||||| ||||||||||||| |||| |||||| |||||||||
Sbjct 490 AGAGCTATGGAGAAGGTTATAGAAGCATCTAGAGTCTCGTGTCTAAATGCCAAATACGGG 549
Query 536 TGTAAAGAGAATACCGCCTATGGAAACCGTTTTAGCCATGAGAAGGTGTGTGTTTTTACC 595
|| || |||| |||| ||||||||||||||||||| |||||| |||| |||||||| |||
Sbjct 550 TGCAAGGAGAGTACCTCCTATGGAAACCGTTTTAGTCATGAGCAGGTATGTGTTTTCACC 609
Query 596 CCTTGTTTTTGTCCCATAGTTGACTGCAACTACTCTGGGTATTACAAGGATCTCAACAAC 655
||||||| ||| |||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 610 CCTTGTTCTTGCCCCATACTTGACTGCCACTACACTGGGTATTACAAGGATCTCAACAAT 669
Query 656 CACGTCCGTGCTGAACACAAAGATGACCTGATCTCGTTCGTGTGGAATACTCGTTTAACT 715
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 670 CACGTCCGTGCTGAACACAAAGATGATCTGATCTCGTTCGTGTGGAATACTCGTTTAACC 729
Query 716 -TTGAGCTTGGACCTCAATGAGAAGACCACAATTCTTCAGGAAGAAAACGATGGGGATGT 774
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 730 ATT-AGCTTGGACCTCAATAAGAAGACCACAATTCTTCAGGAAGAAAACGATGGGCATGT 788
Query 775 GATTGTTGTTCAAGTTTTCAAGGCTTTGCACGCTGTGTATCTTAGTGTGAGCTGTATTGC 834
|||||| || |||||||||| ||||||||| ||||||||| | |||||||||||||||||
Sbjct 789 GATTGTAGTCCAAGTTTTCAGGGCTTTGCATGCTGTGTATGTCAGTGTGAGCTGTATTGC 848
Query 835 ACCTTTGGCACCGGGAGTGGGTAAGTTCTCATGCGGACT-GTTGAATATAACCGTTGGTA 893
||||||| ||||||||||||||| ||| |||||| | || | ||| |||||||||| ||
Sbjct 849 ACCTTTGACACCGGGAGTGGGTAGGTTATCATGCCGTCTTGC-GAAGATAACCGTTGATA 907
Query 894 GCTTACTGAAGCAAGGATTTATGGTGAAGAACGTTCAAAAAGTGACTAATGAAC-TACCC 952
|||||||||||||||||||||||||||||||| | ||||||||||| ||||||| | |||
Sbjct 908 GCTTACTGAAGCAAGGATTTATGGTGAAGAACATACAAAAAGTGACGAATGAACAT-CCC 966
Query 953 GAAGATGGTTTTATGTTGATTCCTTCTTATTTGTTGTCTGGTAATGAGAACTTGAATTTG 1012
||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||| ||
Sbjct 967 GAAGATGGTTTCATGTTGATTCCTTCCTATTTGTTCTCTGGTAATGACAACTTGAATCTG 1026
Query 1013 CAGATTTGGATTGGCCGA-GGCCGGGTCTTTGTTCATTCCTGATTATGTAAAGAAC 1067
||||||||||| |||| | |||||| ||||||||||||| ||||||||||||||||
Sbjct 1027 CAGATTTGGATCGGCC-ATGGCCGGATCTTTGTTCATTCGTGATTATGTAAAGAAC 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52258767345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5