BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494183 Length=1067 Score E Sequences producing significant alignments: (Bits) Value AT5G37930.1 | Symbols: | Protein with RING/U-box and TRAF-like... 1428 0.0 > AT5G37930.1 | Symbols: | Protein with RING/U-box and TRAF-like domains | chr5:15102200-15103669 REVERSE LENGTH=1107 Length=1107 Score = 1428 bits (773), Expect = 0.0 Identities = 979/1076 (91%), Gaps = 23/1076 (2%) Strand=Plus/Plus Query 2 ATGGCGAGATTCTCAGTTTGTGGAGGAGACGACGGAGAAGGACCTAGCAACAACAACAAT 61 |||||||||||||||||||| ||||||||||||||||||||||| | | ||||||||| Sbjct 19 ATGGCGAGATTCTCAGTTTGCGGAGGAGACGACGGAGAAGGACC-A--AGTAACAACAAT 75 Query 62 CATCAATCCCGGAAAAGGCAACGACTTCCTTCAATCGATGAAAacgaagaagacgccgaa 121 || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 76 CACCAATCCCGGAAAAGGCAACGACTTCCTTCAATCGATGAAAATGAAGAAGACGCCGAG 135 Query 122 acctccgacgccggaagttccggtgaagaagaagacgaagaagaaACTCAAAATCGAGGA 181 |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| Sbjct 136 ACCTCCGACGCCGGAAGTTCCGGT---GAAGAAGACGAAGACGAAACTCAGAATCAAGGA 192 Query 182 ATGAGAACGGAATCTGAAGATCGAGGATCAACGAGCGATGATGATAGCGATCGTGAAGTT 241 |||||| | |||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 193 ATGAGACCAGAATCTGAGGATCGAGGATCAACGAGC---GATGATAGCGATCGTGAAGTT 249 Query 242 TTGATAGAAGAGAGACGATTTGGTAAATTCGTAAATAGTCAGAG------TTCGAGCAAA 295 |||| || |||||||||||||||||||| |||||||||||||| ||| |||||| Sbjct 250 GTGATTGAGGAGAGACGATTTGGTAAATTTGTAAATAGTCAGAGTTCTTCTTCTAGCAAA 309 Query 296 GATTCGCCTCTTTCTGTGACGTTATTGGATCCAGATGTTCTTGATTGTCCTATTTGTTGC 355 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 310 GATTCGCCTCTTTCTGTAACGTTATTGGATCCAGATGTTCTTGATTGTCCTATTTGTTGC 369 Query 356 GAGCCATTGAAGATTCCAATCTTTCAGTGTGATAATGGTCATTTGGCGTGTACTTTGTGC 415 ||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||| Sbjct 370 GAGCCATTGAAGATTCCTATCTTTCAGTGTGATAATGGTCATCTGGCTTGTACTTTGTGC 429 Query 416 TGCACAAAAGTGAGGAACCGATGCCCGTCGTGTACATTACCCATTGGTTACGTTCGTTGC 475 ||||| |||||||||||| |||||||||||||||||||||| || ||||| ||||||||| Sbjct 430 TGCACCAAAGTGAGGAACAGATGCCCGTCGTGTACATTACCGATAGGTTATGTTCGTTGC 489 Query 476 AGAGCGATGGAGAAGGTTATAGAAACATCTAGAGTCTCATGTCCAAATGCTAAATACGGG 535 ||||| |||||||||||||||||| ||||||||||||| |||| |||||| ||||||||| Sbjct 490 AGAGCTATGGAGAAGGTTATAGAAGCATCTAGAGTCTCGTGTCTAAATGCCAAATACGGG 549 Query 536 TGTAAAGAGAATACCGCCTATGGAAACCGTTTTAGCCATGAGAAGGTGTGTGTTTTTACC 595 || || |||| |||| ||||||||||||||||||| |||||| |||| |||||||| ||| Sbjct 550 TGCAAGGAGAGTACCTCCTATGGAAACCGTTTTAGTCATGAGCAGGTATGTGTTTTCACC 609 Query 596 CCTTGTTTTTGTCCCATAGTTGACTGCAACTACTCTGGGTATTACAAGGATCTCAACAAC 655 ||||||| ||| |||||| |||||||| ||||| ||||||||||||||||||||||||| Sbjct 610 CCTTGTTCTTGCCCCATACTTGACTGCCACTACACTGGGTATTACAAGGATCTCAACAAT 669 Query 656 CACGTCCGTGCTGAACACAAAGATGACCTGATCTCGTTCGTGTGGAATACTCGTTTAACT 715 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 670 CACGTCCGTGCTGAACACAAAGATGATCTGATCTCGTTCGTGTGGAATACTCGTTTAACC 729 Query 716 -TTGAGCTTGGACCTCAATGAGAAGACCACAATTCTTCAGGAAGAAAACGATGGGGATGT 774 || ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 730 ATT-AGCTTGGACCTCAATAAGAAGACCACAATTCTTCAGGAAGAAAACGATGGGCATGT 788 Query 775 GATTGTTGTTCAAGTTTTCAAGGCTTTGCACGCTGTGTATCTTAGTGTGAGCTGTATTGC 834 |||||| || |||||||||| ||||||||| ||||||||| | ||||||||||||||||| Sbjct 789 GATTGTAGTCCAAGTTTTCAGGGCTTTGCATGCTGTGTATGTCAGTGTGAGCTGTATTGC 848 Query 835 ACCTTTGGCACCGGGAGTGGGTAAGTTCTCATGCGGACT-GTTGAATATAACCGTTGGTA 893 ||||||| ||||||||||||||| ||| |||||| | || | ||| |||||||||| || Sbjct 849 ACCTTTGACACCGGGAGTGGGTAGGTTATCATGCCGTCTTGC-GAAGATAACCGTTGATA 907 Query 894 GCTTACTGAAGCAAGGATTTATGGTGAAGAACGTTCAAAAAGTGACTAATGAAC-TACCC 952 |||||||||||||||||||||||||||||||| | ||||||||||| ||||||| | ||| Sbjct 908 GCTTACTGAAGCAAGGATTTATGGTGAAGAACATACAAAAAGTGACGAATGAACAT-CCC 966 Query 953 GAAGATGGTTTTATGTTGATTCCTTCTTATTTGTTGTCTGGTAATGAGAACTTGAATTTG 1012 ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||| || Sbjct 967 GAAGATGGTTTCATGTTGATTCCTTCCTATTTGTTCTCTGGTAATGACAACTTGAATCTG 1026 Query 1013 CAGATTTGGATTGGCCGA-GGCCGGGTCTTTGTTCATTCCTGATTATGTAAAGAAC 1067 ||||||||||| |||| | |||||| ||||||||||||| |||||||||||||||| Sbjct 1027 CAGATTTGGATCGGCC-ATGGCCGGATCTTTGTTCATTCGTGATTATGTAAAGAAC 1081 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52258767345 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5