BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494183

Length=1067
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G37930.1 | Symbols:  | Protein with RING/U-box and TRAF-like...  1428    0.0  


> AT5G37930.1 | Symbols:  | Protein with RING/U-box and TRAF-like 
domains | chr5:15102200-15103669 REVERSE LENGTH=1107
Length=1107

 Score = 1428 bits (773),  Expect = 0.0
 Identities = 979/1076 (91%), Gaps = 23/1076 (2%)
 Strand=Plus/Plus

Query  2     ATGGCGAGATTCTCAGTTTGTGGAGGAGACGACGGAGAAGGACCTAGCAACAACAACAAT  61
             |||||||||||||||||||| ||||||||||||||||||||||| |  |  |||||||||
Sbjct  19    ATGGCGAGATTCTCAGTTTGCGGAGGAGACGACGGAGAAGGACC-A--AGTAACAACAAT  75

Query  62    CATCAATCCCGGAAAAGGCAACGACTTCCTTCAATCGATGAAAacgaagaagacgccgaa  121
             || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  76    CACCAATCCCGGAAAAGGCAACGACTTCCTTCAATCGATGAAAATGAAGAAGACGCCGAG  135

Query  122   acctccgacgccggaagttccggtgaagaagaagacgaagaagaaACTCAAAATCGAGGA  181
             ||||||||||||||||||||||||   |||||||||||||| |||||||| |||| ||||
Sbjct  136   ACCTCCGACGCCGGAAGTTCCGGT---GAAGAAGACGAAGACGAAACTCAGAATCAAGGA  192

Query  182   ATGAGAACGGAATCTGAAGATCGAGGATCAACGAGCGATGATGATAGCGATCGTGAAGTT  241
             |||||| | |||||||| ||||||||||||||||||   |||||||||||||||||||||
Sbjct  193   ATGAGACCAGAATCTGAGGATCGAGGATCAACGAGC---GATGATAGCGATCGTGAAGTT  249

Query  242   TTGATAGAAGAGAGACGATTTGGTAAATTCGTAAATAGTCAGAG------TTCGAGCAAA  295
              |||| || |||||||||||||||||||| ||||||||||||||      ||| ||||||
Sbjct  250   GTGATTGAGGAGAGACGATTTGGTAAATTTGTAAATAGTCAGAGTTCTTCTTCTAGCAAA  309

Query  296   GATTCGCCTCTTTCTGTGACGTTATTGGATCCAGATGTTCTTGATTGTCCTATTTGTTGC  355
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  310   GATTCGCCTCTTTCTGTAACGTTATTGGATCCAGATGTTCTTGATTGTCCTATTTGTTGC  369

Query  356   GAGCCATTGAAGATTCCAATCTTTCAGTGTGATAATGGTCATTTGGCGTGTACTTTGTGC  415
             ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct  370   GAGCCATTGAAGATTCCTATCTTTCAGTGTGATAATGGTCATCTGGCTTGTACTTTGTGC  429

Query  416   TGCACAAAAGTGAGGAACCGATGCCCGTCGTGTACATTACCCATTGGTTACGTTCGTTGC  475
             ||||| |||||||||||| |||||||||||||||||||||| || ||||| |||||||||
Sbjct  430   TGCACCAAAGTGAGGAACAGATGCCCGTCGTGTACATTACCGATAGGTTATGTTCGTTGC  489

Query  476   AGAGCGATGGAGAAGGTTATAGAAACATCTAGAGTCTCATGTCCAAATGCTAAATACGGG  535
             ||||| |||||||||||||||||| ||||||||||||| |||| |||||| |||||||||
Sbjct  490   AGAGCTATGGAGAAGGTTATAGAAGCATCTAGAGTCTCGTGTCTAAATGCCAAATACGGG  549

Query  536   TGTAAAGAGAATACCGCCTATGGAAACCGTTTTAGCCATGAGAAGGTGTGTGTTTTTACC  595
             || || |||| |||| ||||||||||||||||||| |||||| |||| |||||||| |||
Sbjct  550   TGCAAGGAGAGTACCTCCTATGGAAACCGTTTTAGTCATGAGCAGGTATGTGTTTTCACC  609

Query  596   CCTTGTTTTTGTCCCATAGTTGACTGCAACTACTCTGGGTATTACAAGGATCTCAACAAC  655
             ||||||| ||| |||||| |||||||| ||||| ||||||||||||||||||||||||| 
Sbjct  610   CCTTGTTCTTGCCCCATACTTGACTGCCACTACACTGGGTATTACAAGGATCTCAACAAT  669

Query  656   CACGTCCGTGCTGAACACAAAGATGACCTGATCTCGTTCGTGTGGAATACTCGTTTAACT  715
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  670   CACGTCCGTGCTGAACACAAAGATGATCTGATCTCGTTCGTGTGGAATACTCGTTTAACC  729

Query  716   -TTGAGCTTGGACCTCAATGAGAAGACCACAATTCTTCAGGAAGAAAACGATGGGGATGT  774
              || ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct  730   ATT-AGCTTGGACCTCAATAAGAAGACCACAATTCTTCAGGAAGAAAACGATGGGCATGT  788

Query  775   GATTGTTGTTCAAGTTTTCAAGGCTTTGCACGCTGTGTATCTTAGTGTGAGCTGTATTGC  834
             |||||| || |||||||||| ||||||||| ||||||||| | |||||||||||||||||
Sbjct  789   GATTGTAGTCCAAGTTTTCAGGGCTTTGCATGCTGTGTATGTCAGTGTGAGCTGTATTGC  848

Query  835   ACCTTTGGCACCGGGAGTGGGTAAGTTCTCATGCGGACT-GTTGAATATAACCGTTGGTA  893
             ||||||| ||||||||||||||| ||| |||||| | || |  ||| |||||||||| ||
Sbjct  849   ACCTTTGACACCGGGAGTGGGTAGGTTATCATGCCGTCTTGC-GAAGATAACCGTTGATA  907

Query  894   GCTTACTGAAGCAAGGATTTATGGTGAAGAACGTTCAAAAAGTGACTAATGAAC-TACCC  952
             |||||||||||||||||||||||||||||||| | ||||||||||| ||||||| | |||
Sbjct  908   GCTTACTGAAGCAAGGATTTATGGTGAAGAACATACAAAAAGTGACGAATGAACAT-CCC  966

Query  953   GAAGATGGTTTTATGTTGATTCCTTCTTATTTGTTGTCTGGTAATGAGAACTTGAATTTG  1012
             ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||| ||
Sbjct  967   GAAGATGGTTTCATGTTGATTCCTTCCTATTTGTTCTCTGGTAATGACAACTTGAATCTG  1026

Query  1013  CAGATTTGGATTGGCCGA-GGCCGGGTCTTTGTTCATTCCTGATTATGTAAAGAAC  1067
             ||||||||||| |||| | |||||| ||||||||||||| ||||||||||||||||
Sbjct  1027  CAGATTTGGATCGGCC-ATGGCCGGATCTTTGTTCATTCGTGATTATGTAAAGAAC  1081



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 52258767345


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5