BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494184
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37910.1 | Symbols: | Protein with RING/U-box and TRAF-like... 893 0.0
AT5G37900.1 | Symbols: | TRAF-like superfamily protein | chr5:... 521 3e-147
> AT5G37910.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:15096210-15097318 REVERSE LENGTH=831
Length=831
Score = 893 bits (483), Expect = 0.0
Identities = 717/825 (87%), Gaps = 36/825 (4%)
Strand=Plus/Plus
Query 13 TCGGAAGCTTTGTTATTTCACGGTGGTGAAGGGGAGAGAGTGGCTAAGAGACACCGCTCG 72
|||||||||||| ||| ||| |||| || |||||||||||||||||||||||| ||||||
Sbjct 19 TCGGAAGCTTTGATATCTCAAGGTGATGGAGGGGAGAGAGTGGCTAAGAGACAACGCTCG 78
Query 73 GCG--A-CACTGCTAGATCTTGATATCCTCGATTGTCCTGTTTGCTGTGAAGCATTGGCG 129
||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 79 GCGATAGTACTGCTAGATCTTGATATCCTCGATTGTCCTATTTGCTGTGAAGCATTGACG 138
Query 130 ACTCCTATCTTCCAGTGTGATAATGGACATTTAGCTTGCTCTTCTTGCTGTCCCAAACTG 189
| |||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||
Sbjct 139 AGTCCTATCTTCCAGTGTGATAATGGGCATTTGGCTTGCGGTTCTTGCTGTCCCAAACTG 198
Query 190 AGGAACAAGTGCCCTTCATGTGCTTTCCCTGTTGGCCACAATCG-ATGTAGAGCAATGGA 248
|| || ||||||||| ||||| |||| |||||||| |||| ||| | | |||||||||||
Sbjct 199 AGTAATAAGTGCCCTGCATGTACTTTGCCTGTTGGTCACAGTCGCA-GCAGAGCAATGGA 257
Query 249 GAGTATTCTTGAATCGACCTTGGTCCCATGCCCAAACGAAATGTTTGGTTGCACCAAGAC 308
|||| |||||||||| | ||| ||||||||||||||| | ||||||||| |||||||
Sbjct 258 GAGTGTTCTTGAATCTATTTTGATCCCATGCCCAAACGTCAGGTTTGGTTGTACCAAGAG 317
Query 309 TTGCTTTTATGGTAAAGAATCAGCTCATGAAAAAGAATGCATCTTCTCTCAATGCTCATG 368
|| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TTTCTTTTATGGGAAAGAGTCAGCTCATGAAAAAGAATGCATCTTCTCTCAATGCTCATG 377
Query 369 CCCTTCA-CGAGAATGCGATTACACTGGCTCATACAAGGATCTCTACGCTCACTATAAAC 427
||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 CCCTTCATCG-GTCTGCGATTACACTGGCTCATACAAGGATCTCTACGCTCACTATAAAC 436
Query 428 TGACTCACTC---GAA-ATTTTCCTGGAGTATTAAA---T---G-TG-GC-A-TTCCTTA 473
|||||||||| ||| |||||| |||| |||||| | | || || | || |||
Sbjct 437 TGACTCACTCCACGAATATTTTC-TGGAATATTAAGCGCTTTAGATGTGCCAATTTCTT- 494
Query 474 TACGGCCGTG-ATGTTCATCAGCAATAAGATACTAATTAAAAGGGTACATGAGA-GTAAA 531
|||| || | ||| |||||||| |||||||||||||||||||||||||||||| | |||
Sbjct 495 TACGACC-TCCATGCTCATCAGCGATAAGATACTAATTAAAAGGGTACATGAGAAG-AAA 552
Query 532 CTATTGTTTGCAGTACAGTGTTTTAGAGAACCGTGTGGTGTGTATGTAACCGTAAGCTGC 591
|||||| ||||||| ||||||||||| |||||||||||||||||||| || ||||||| |
Sbjct 553 CTATTGCTTGCAGTGCAGTGTTTTAGGGAACCGTGTGGTGTGTATGTGACTGTAAGCTTC 612
Query 592 ATTGCACCATCTGCTCCTGAAGTAGGACAGTTCTCATATCGTCTCTCCTACACTAAGGAT 651
||||||||||||||||| ||||||||| |||||||||||| |||||||||| | ||||
Sbjct 613 ATTGCACCATCTGCTCCAGAAGTAGGAGAGTTCTCATATCAACTCTCCTACAATGTGGAT 672
Query 652 GGACAAACTGTGATTTATGAATCACCGGAGGTGAAGAAGGTTCGTAAAGTGAGTTTTGAA 711
||||| ||||||| ||||||||| ||||||||||||| |||| ||||||||||| |||||
Sbjct 673 GGACACACTGTGACTTATGAATCTCCGGAGGTGAAGAGGGTTTGTAAAGTGAGTATTGAA 732
Query 712 ACCCCTCAAGAGAATTTCATGTTGATCCCTCACAACTTATTATTGCGTAGTGGCTTGTTG 771
|||||||||||||||||||||||||| ||||||| || | ||||||| ||| |||||||
Sbjct 733 ACCCCTCAAGAGAATTTCATGTTGATACCTCACAG-TT-T-ATTGCGTGGTGACTTGTTG 789
Query 772 -ATGATTG-AGCTTTGTATCGTCGACAA-GTTGAACCAAGAGTAA 813
| ||| | || ||| |||| |||| || || || ||||||||||
Sbjct 790 GA-GAT-GCAGGTTTTTATCATCGAAAATGTGGA-CCAAGAGTAA 831
> AT5G37900.1 | Symbols: | TRAF-like superfamily protein | chr5:15093903-15094802
REVERSE LENGTH=726
Length=726
Score = 521 bits (282), Expect = 3e-147
Identities = 493/591 (83%), Gaps = 29/591 (5%)
Strand=Plus/Plus
Query 242 CAATGGAGAGTATTCTTGAATCGACCTTGGTCCCATGCCCAAACGAAATGTTTGGTTGCA 301
||||||||| |||||||||||||| |||||| ||||||||||||| |||||||||||||
Sbjct 146 CAATGGAGAATATTCTTGAATCGATATTGGTCACATGCCCAAACGACATGTTTGGTTGCA 205
Query 302 CCAAGACTTGCTTTTATGGTAAAGAATCAGCTCATGAAAAAGAATGCATCTTCTCTCAAT 361
|| ||| || ||| ||||| ||| ||||| |||||||| |||||||||| ||||||| ||
Sbjct 206 CCGAGAGTTTCTTATATGGGAAAAAATCAACTCATGAAGAAGAATGCATTTTCTCTCTAT 265
Query 362 GCTCATGCCCTTCA-CGAGAATGCGATTACACTGGCTC-ATACAAGGATCTCTACGCTCA 419
|||||||||||||| | || || || ||| | ||| | |||| |||||||||| | |||
Sbjct 266 GCTCATGCCCTTCATTG-GACTGTGAGTACTCCGGC-CGATACGAGGATCTCTATGATCA 323
Query 420 CTATAAACTGACT--CA-CTCGAAATTTTCCTGG---AGT-A-----TTAAATGTGGCAT 467
||||||||||||| || |||||| | | |||| | | | ||| || | ||||
Sbjct 324 CTATAAACTGACTCACATCTCGAACTCATACTGGACCACTAACTGCTTTAGATCTAGCAT 383
Query 468 TCCTTATACGGCCGTGATG-TTCATCAGCAATAAGATACTAATTAAAAGGGTACATGAG- 525
||| |||| |||| |||| || |||||| ||||||||| ||||| ||||||| |||||
Sbjct 384 TCCATATAAGGCCCCGATGCTT-ATCAGCGATAAGATACAAATTACAAGGGTATATGAGA 442
Query 526 AGTAAACTATTGTTTGCAGTACAGTGTTTTAGAGAACCGTGTGGTGTGTATGTAACCGTA 585
|| ||| ||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 443 AG-AAAATATTGTTTGCAGTGCAGTGTTTTAGGGAGTCGTGTGGTGTGTATGTAACCGTA 501
Query 586 AGCTGCATTGCACCATCTGCTCCTGAAGTAGGACAGTTCTCATATCGTCTCTCCTACACT 645
||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct 502 AGCTGCATTGCACCATCTGCTCCAGAAGTTGGACAGTTCTCATATCAAATCTCCTACACT 561
Query 646 AAGGATGGACAAACTGTGATTTAT-GAATCACCGGAGGTGAAGAAGGTTCGTAAAGTGAG 704
||||| ||| ||| || |||| || ||||| | |||||| |||||||||||||||
Sbjct 562 GTGGATGAACACACTATGGTTTACAGA-TCACCACAAATGAAGAGGGTTCGTAAAGTGAG 620
Query 705 TTTTGAAACCCCTCAAGAGAATTTCATGTTGATCCCTCACAACTTATTATTGCGTAGTGG 764
||||||||| ||||||||||||||||||||||| |||||||| || | |||||||||||
Sbjct 621 TTTTGAAACACCTCAAGAGAATTTCATGTTGATACCTCACAA-TT-T-ATTGCGTAGTGA 677
Query 765 CTTGTTG-ATGATTGAGCTTTGTATCGTCGACAA-GTTGAACCAAGAGTAA 813
|||||| || ||| |||||| ||||||||| || || |||||||||||||
Sbjct 678 ATTGTTGGAT-ATTAAGCTTTCTATCGTCGA-AACGTCGAACCAAGAGTAA 726
Score = 183 bits (99), Expect = 2e-45
Identities = 129/144 (90%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGGAGCCTCGGAAGCTTTGTTATTTCACGGTGGTGAAGGGGAGAGAGTGGCTAAG 60
||||||||||||| ||||||||| ||| ||| ||| || |||||||||||||||||||
Sbjct 1 ATGGTGGGAGCCTTAGAAGCTTTGATATCTCAAGGTCATGGAGGGGAGAGAGTGGCTAAG 60
Query 61 AGACACCGCTCGGCGACACTGCTAGATCTTGATATCCTCGATTGTCCTGTTTGCTGTGAA 120
||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 AGACAACGCTCGGCGACATTGCTAGATCTTGATATCCTCGATTGTCCTATTTGCTGTGAA 120
Query 121 GCATTGGCGACTCCTATCTTCCAG 144
| |||| || |||||||||||||
Sbjct 121 GGATTGACGTGTCCTATCTTCCAG 144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5