BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494186
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47760.1 | Symbols: PGLP2, ATPGLP2, ATPK5 | 2-phosphoglycola... 1426 0.0
> AT5G47760.1 | Symbols: PGLP2, ATPGLP2, ATPK5 | 2-phosphoglycolate
phosphatase 2 | chr5:19342884-19345039 REVERSE LENGTH=1203
Length=1203
Score = 1426 bits (772), Expect = 0.0
Identities = 898/959 (94%), Gaps = 8/959 (1%)
Strand=Plus/Plus
Query 2 AGAAGAAGAAAAAGAAGACACTCCTCCCTCCAATGGCGCCTCAGCTTCTCTCCTCCCGTA 61
|||||||||| ||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 33 AGAAGAAGAAGAAGAAGACA---CT-CCTCCAATGGCGCCTCAGCTTCTCTCCTCCAGTA 88
Query 62 ACTTCAAATCTCTCTTTGACTCTGTCGACACTTTCCTATTTGACTGCGATGGTGTTATAT 121
|||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||
Sbjct 89 ACTTCAAATCTCTCTTTGACTCTGTCGATACGTTCCTCTTCGACTGCGATGGTGTTATAT 148
Query 122 GGAAGGGTGAAAAGCTCATCGATGGCGTCGCCCAAACTCTGGACCTAATCCGCTCTAAGG 181
|||||||||||| |||||||||||||||| |||||||||| ||||| ||||| |||||||
Sbjct 149 GGAAGGGTGAAACGCTCATCGATGGCGTCTCCCAAACTCTCGACCTTATCCGTTCTAAGG 208
Query 182 GTAAAAATCTTGTCTTTGTGACCAATAATTCGGTCAAATCGAGGAGGCAATACGCTGAAA 241
|||||||| |||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 209 GTAAAAATGTTGTCTTTGTGACCAACAATTCCGTAAAATCGAGGAGGCAATACGCTGAAA 268
Query 242 AGTTCCGATCTTTGGGTGTCCCTTCTGTTACTCAGGATGAGATCTTCTCTTCGTCATTTG 301
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 269 AGTTCCGATCTTTGGGTGTCACTTCTATTACTCAGGATGAGATCTTCTCTTCGTCATTTG 328
Query 302 CGGCCGCTATGTACCTCAAAGTCAACAA-TTTCCATAAGGACAAGAAGGTTTATGTGATT 360
|||| |||||||| ||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 329 CGGCAGCTATGTATCTCAAAGTCAATAACTTTCC-TAAGGACAAGAAGGTTTATGTGATT 387
Query 361 GGTGGGGAAGGCATTCTTGAGGAGCTCCAGATTGCTGGTTTTACAGGTCTCGGTGGTCCT 420
||||| || || ||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 388 GGTGGAGAGGGTGTTCTTGAGGAGCTGCAGATTGCCGGTTTTACAGGTCTTGGTGGTCCT 447
Query 421 GAAGACGGTGAAAAGAGGGCACAATGGAAATCAAACTCTCTCTTTGAACATGATAAAAGC 480
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 GAAGATGGTGAAAAGAAGGCACAATGGAAATCAAACTCTCTCTTTGAACATGATAAAAGT 507
Query 481 GTGGGAGCAGTTGTGGTCGGACTAGACCCCAATATAAACTACTATAAGCTTCAATACGGT 540
|||||||||||||| || |||||||||||||| || ||||||||||||||||| |||||
Sbjct 508 GTGGGAGCAGTTGTAGTTGGACTAGACCCCAACATTAACTACTATAAGCTTCAGTACGGG 567
Query 541 ACCCTCTGTGTACGCGAGAATCCGGGATGTCTTTTCATTGCAACCAACCGTGATGCAGTA 600
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 568 ACTCTCTGTGTACGCGAGAATCCGGGATGTCTCTTCATTGCGACCAACCGTGATGCAGTA 627
Query 601 GGACATATGACGGATCTCCAAGAGTGGCCTGGTGCTGGTTGTATGGTTGCTGCCATGTGT 660
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 628 GGACATATGACGGATCTGCAAGAGTGGCCTGGTGCTGGGTGTATGGTTGCTGCCATGTGT 687
Query 661 GGATCAACTGAAAGAGAACCAATAGTTGTTGGGAAACCATCTACTTTCATGATGGACTTT 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 GGATCGACTGAAAGAGAACCAATAGTTGTTGGGAAACCATCTACTTTCATGATGGACTTT 747
Query 721 CTGCTACAAAAATTTGGGACAGAAACGTCAAGAATGTGCATGGTGGGTGATAGGCTAGAT 780
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 748 CTGCTACAAAAATTTGGGACGGAAACGTCAAGAATGTGCATGGTAGGTGATAGGCTAGAT 807
Query 781 ACTGATATCTTGTTTGGACAGAATGCTGGCTGCAAAACTCTCCTCGTCCTAACAGGGGTG 840
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 ACTGATATCTTGTTTGGGCAGAATGCTGGCTGCAAAACTCTCCTCGTCCTAACAGGGGTG 867
Query 841 ACAAGTGAATCAAATCTACTAAA-AGAGGGCAACGAGATTGAACCAGACTATTACACAAG 899
||||||||||| ||||||||| | | |||||||| |||| ||||||||||||||||||||
Sbjct 868 ACAAGTGAATCTAATCTACTAGATA-AGGGCAACAAGATAGAACCAGACTATTACACAAG 926
Query 900 CACGGTCTCTGATATGATGAAACTGATGGAGTCTCCCTAGTAAGTAAGGGCATCATCAT 958
||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 927 CACAGTCTCTGATATCATAAAACTGATGGAGTCCCCCTAGTAAGTAAGGGCATCATCAT 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389532381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5