BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494187
Length=2191
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47750.1 | Symbols: D6PKL2, PK5 | D6 protein kinase like 2 |... 3347 0.0
> AT5G47750.1 | Symbols: D6PKL2, PK5 | D6 protein kinase like 2
| chr5:19339703-19342361 REVERSE LENGTH=2277
Length=2277
Score = 3347 bits (1812), Expect = 0.0
Identities = 2034/2141 (95%), Gaps = 16/2141 (1%)
Strand=Plus/Plus
Query 52 TGCATGTAATTGTAGCAGCAAGCATATATACTGTACTTTTCGAATCTTCTCTGCGCCAAT 111
|||||||||||| |||||||| ||| | | | ||||||||||||||||||||| ||||
Sbjct 151 TGCATGTAATTGAAGCAGCAACCAT-T-T-C--TACTTTTCGAATCTTCTCTGCTTCAAT 205
Query 112 CCACACCCAAGGGTTTGAAGGAAGATGTGTCTTTCCCGTTAGCTAAAGATAATCT-ATTT 170
|||||||||||||||| |||||| ||| ||||||||||||||||||||||||| | ||||
Sbjct 206 CCACACCCAAGGGTTTCAAGGAATATGGGTCTTTCCCGTTAGCTAAAGATAAT-TAATTT 264
Query 171 TGTGTCCCAATGGCGTCTACTCGTAAACCCAGTGCTCATAAAGCTGAAATCGAAGCTCAG 230
||||| || |||||||| |||||||||||||||| |||| ||||||| |||||||||||
Sbjct 265 TGTGT-CCGATGGCGTCCACTCGTAAACCCAGTGGTCATGGAGCTGAAGTCGAAGCTCAG 323
Query 231 AAGCGCTCCTCTTCAAATAGTAGTAATACTAAGTCAGCCAAAGCCGAGATTTTTGAGCCG 290
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 324 AAGCGCTCCTCTTCGAATAGTAG---TACTAAGTCAGCCAAAGCCGAGACTTTTGAGCCG 380
Query 291 ACGCAGTTACAAAGATCACTAACAAATCCAAGTGCTGTTGGAATTCCGGAGAGTAAACGG 350
| ||| |||||||||||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct 381 ATGCAATTACAAAGATCAGTAACAAACCCAAGAGCTGTTGGAATTCCGGAGAGTAAACGG 440
Query 351 TTGCCAGAGTCGTTTAAGAAGCGATCTAGTGACCCAGCTGTTTGTAAACCCGATTTTAGC 410
||||||||||| |||| |||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 441 TTGCCAGAGTCTTTTAGGAAGCGATCTAGCGACCCGGCTGTTTGTAAACCCGATTTCAGC 500
Query 411 TCACTATCCACCGTTCTTGAGCATGTAGATTCATTGACCATTGATGAAAAGAAAACATCT 470
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 TCCCTATCCACTGTTCTTGAGCATGTAGATTCATTGACCATTGATGAAAAGAAAACATCT 560
Query 471 GGCTTTGGCAGTGTCAAGACCAGCTCTGCTTCAGCCAAAATGAGTGATGGTACCAGCAGT 530
||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 561 GGCTTTGGCAGCGTCAAGACCAGCTCTGCTTCAGCCAAATTGAGTGATGGTACGAGCAGT 620
Query 531 CTTGGCAAGACAAGTGGTAGTGCCAAGCTAAGTGGCCGCCTTGATTTCATGGAGAGTGGC 590
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 CTTGGCAAGACTAGTGGAAGTGCCAAGCTAAGTGGCCGCCTTGATTTCATGGAGAGTGGC 680
Query 591 AAGAGCAGTATCTGCAGAGGAAGCACAAGCAGTGATGTCAGTGACGAGAGTAGTTGCAGC 650
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 681 AAGAGCAGTATCTGCAGAGGAAGCACAAGCAGTGATGTGAGTGACGAGAGTAGCTGCAGC 740
Query 651 AGCTTTAGCAGCACTGTCAACAAACCCCACAAGGCCAATGACTTGAGATGGGAAGCAATC 710
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 741 AGCTTTAGTAGCACTGTCAACAAACCCCACAAGGCCAATGACTTAAGATGGGAAGCAATC 800
Query 711 CAGGCTGTTAGGGTTCGGGATGGGGTTTTAGGTCTGAGCCATTTCAGGCTCCTTAAGAGG 770
||||||||||||||||| |||||| |||||||||| || |||||||||||||||||| ||
Sbjct 801 CAGGCTGTTAGGGTTCGTGATGGGCTTTTAGGTCTTAGTCATTTCAGGCTCCTTAAGCGG 860
Query 771 CTAGGCTGCGGGGACATTGGGAGTGTTTATCTCTCTGAGCTTAGCGGGACTAAGTGTTAC 830
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 861 TTAGGCTGCGGGGACATCGGGAGTGTTTATCTCTCTGAGCTGAGCGGGACTAAGTGTTAC 920
Query 831 TTTGCTATGAAGGTTATGGACAAGACATCCCTTGCCAGTCGCAAGAAGCTTCTCCGAGCT 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 TTTGCTATGAAGGTTATGGACAAGACATCCCTTGCCAGTCGCAAGAAGCTTCTCCGAGCT 980
Query 891 CAGACCGAAAGAGAGATTCTCCAGTCTTTGGATCATCCGTTTCTCCCTACCCTCTACACT 950
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 981 CAGACTGAAAGAGAGATTCTCCAGTCTTTGGATCATCCATTTCTCCCTACCCTCTACACT 1040
Query 951 CACTTTGAGACTGAGAAGTTCTCGTGCCTGGTGATGGAATTCTGTCCCGGAGGAGATTTG 1010
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1041 CACTTTGAGACTGAGAAATTCTCATGCCTGGTGATGGAATTCTGTCCCGGAGGAGATTTG 1100
Query 1011 CATACTCTCAGGCAACGCCAGCCGGGGAAGCATTTTTCTGAGCAAGCCGTAAAATTTTAC 1070
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1101 CATACTCTCAGGCAACGCCAGCCGGGGAAACATTTTTCTGAGCAAGCGGTAAAATTTTAC 1160
Query 1071 ATAGCAGAGTCATTGCTAGCTTTGGAATACCTGCACATGCTTGGGATTGTGTATCGCGAT 1130
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1161 ATAGCAGAGTCATTGTTAGCTTTGGAATACCTGCACATGCTTGGGATTGTGTATCGAGAT 1220
Query 1131 CTTAAGCCTGAAAACGTTCTAGTTCGGGAAGACGGACATATAATGCTCTCTGATTTTGAC 1190
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1221 CTTAAGCCTGAAAACGTTCTAGTTCGAGAAGACGGACATATAATGCTCTCTGATTTTGAC 1280
Query 1191 CTTTCACTCCGCTGTCTTGTCAGCCCCACTCTAGTGAAATCTGCCGCCATCGAGTCAGAT 1250
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1281 CTTTCTCTCCGATGTCTTGTCAGCCCGACTCTAGTGAAATCTGCCGCCATCGAGTCAGAT 1340
Query 1251 CCATTACGAAAAAACGTTTACTGTGTGCAGCCCGCTTGCATTGAGCCCTCCTGCATTCAA 1310
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 CCTTTACGGAAAAACGTTTACTGTGTGCAGCCCGCTTGCATTGAGCCCTCCTGCATTCAA 1400
Query 1311 CCGTCTTGCACCGTCCCCACCACTTGCTTCTCCCCACGTTTGTTCTCAAGCAAATCTAAG 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 CCGTCTTGCACCGTCCCCACCACTTGCTTCTCCCCACGTTTGTTCTCAAGCAAATCTAAG 1460
Query 1371 AAGGACCGTAAACCCAAGAATGACACCGCGAATCAAGTTAGGCCGTTGCCAGAGCTGGTA 1430
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1461 AAGGACCGTAAACCCAAGAATGACACCGCAAATCAAGTTAGGCCATTGCCAGAGCTGGTA 1520
Query 1431 GCCGAGCCAACCGATGCACGGTCCATGTCATTTGTGGGCACACACGAGTACTTAGCCCCA 1490
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1521 GCCGAGCCAACCGATGCACGTTCCATGTCATTTGTGGGCACACACGAGTACTTGGCCCCA 1580
Query 1491 GAGATCATCAAAGGCGAAGGCCATGGCAGTGCAGTGGATTGGTGGACTTTTGGGATCTTC 1550
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1581 GAGATCATCAAAGGCGAAGGGCATGGCAGTGCAGTGGATTGGTGGACTTTTGGGATATTC 1640
Query 1551 CTTTACGAGCTTCTCTTTGGGAGAACGCCTTTCAAGGGCTCAGGAAACCGACAAACACTG 1610
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1641 CTTTACGAGCTTCTCTTTGGGAGAACGCCCTTCAAGGGCTCAGGAAACCGACAAACACTG 1700
Query 1611 TTCAATGTGGTGGGTCAGCCTCTGCGGTTCCCAGAAACACCTGTGGTGAGTTTTGCAGCG 1670
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1701 TTCAATGTGGTGGGTCAGCCTCTGCGGTTCCCAGAAACGCCTGTGGTGAGTTTTGCAGCG 1760
Query 1671 AGAGACCTCATCCGGGGCTTGCTCATGAAGGAGCCGCAACAGCGGCTGGGGTTCAAACGG 1730
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1761 AGAGACCTCATCCGGGGCTTGCTCATGAAGGAGCCGCAGCAGCGGCTGGGGTTCAAACGG 1820
Query 1731 GGAGCCACTGAGGTTAAGCAGCACCCGTTCTTCGAAGGTGTGAACTGGGCTTTGATTCGG 1790
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1821 GGAGCCACTGAGGTTAAGCAGCACCCTTTCTTCGAAGGTGTGAACTGGGCTTTGATTCGG 1880
Query 1791 TGTGCGACTCCACCGGAAATCCCAAAGCCGGTTGAGCTGGAAAAGGGACCTGTGAGTGTT 1850
||||||||||| |||||||| ||||||||||||||||||||||| ||| |||||||||||
Sbjct 1881 TGTGCGACTCCCCCGGAAATACCAAAGCCGGTTGAGCTGGAAAAAGGAGCTGTGAGTGTT 1940
Query 1851 GCAGAGGCACCATCAAGCCAGAAGACAGCAGCCGGTTTGGTTCTGAATGCTCAGAAAGGG 1910
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1941 GCAGAGGCACCATCAAGCCAGAAGACAGCAGCGGGTTTGGTTCTGAATGCTCAGAAAGGG 2000
Query 1911 TCTGATAACTATTTGGAATTTGATTTCTTCTAGCGTTACGGTTAGACATATGTTACTCTA 1970
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2001 TCTGATAACTATTTGGAATTTGATTTCTTCTAGCGTTACGGTTAGACATATGGTACTCTA 2060
Query 1971 TTCTTCCTTAAAAGACTCTGTGGTAAAGATGATGATCAGGTGTTGATGTTTCGCTTTTTA 2030
|||||||||| |||||| |||| |||| | ||||||||||||||||||||||||| ||||
Sbjct 2061 TTCTTCCTTAGAAGACTATGTGATAAA-A-GATGATCAGGTGTTGATGTTTCGCTCTTTA 2118
Query 2031 TAGATTGTCATGAATTGTATGCTTGTTTGTATGCATAAGCTGTTGTAGTTTATAAAAATG 2090
||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 2119 TAGATTGCCATGAATTGTAAGCTTGTTTGTATGCATAAGCTGCTGTAGTTTATAAAAATG 2178
Query 2091 TTGTAACTGTTTCTCGTAACGTTATTAGTTTTTATCAGAATTCCTTTTCACTTACTCTAT 2150
|||||||||||||||||||| ||||||||| |||||||| |||||||| ||| ||||||
Sbjct 2179 TTGTAACTGTTTCTCGTAACCTTATTAGTTGTTATCAGAGTTCCTTTTTACTCGCTCTAT 2238
Query 2151 CGAATGACAAAACGCAGTAACATCAAATGTATTGTCTCTGC 2191
| || ||||||| | || |||||||||||||||||||||
Sbjct 2239 CCAAACACAAAAC--ATTA-CATCAAATGTATTGTCTCTGC 2276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108684179925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5