BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494188
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47740.2 | Symbols: | Adenine nucleotide alpha hydrolases-l... 1332 0.0
> AT5G47740.2 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr5:19338511-19339775 FORWARD LENGTH=1010
Length=1010
Score = 1332 bits (721), Expect = 0.0
Identities = 892/967 (92%), Gaps = 41/967 (4%)
Strand=Plus/Plus
Query 1 AATGTCTTGAAAAGTTCAGGCTTTCACAAACCTCACACGCAAAAATACACCACAATCATC 60
|||||||||||||||||||||||||| |||||||||||||||||| |||||| || |||
Sbjct 1 AATGTCTTGAAAAGTTCAGGCTTTCATAAACCTCACACGCAAAAA-ACACCA-AA--ATC 56
Query 61 AGGTCATACATTCCACAAGCACATGTAGATTGCACAT--ATA-T----------A-T--- 103
|||||||||||||||||||||||||| |||||| || ||| | | |
Sbjct 57 AGGTCATACATTCCACAAGCACATGTTCATTGCATATAAATATTAAAAGAAAGGAGTACG 116
Query 104 -TTTGATGCGGCAGAGAGGGCAAAAGAAGAGC-AAAAAAGTCAACGAGAAGAAAACTTGA 161
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 117 GTTTGATGAGGCAGAGAGGGCAAAAGAAGAGCAAAAAAAGTCAACGAGAAGAAAACTTGA 176
Query 162 AATGCAACggaggagcaatgagatagaggaggagga-g-----gaagatggaaggagagg 215
|||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
Sbjct 177 AATGCAACGGAGGAGCAATGAGATAGAGGAGGAGGAGGAACAAGAAGATGGAAGGAGAAG 236
Query 216 acttgagagcgtgagagagagccagttggaagggagaagCAGCGGAACAGTGTCGATGAA 275
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 237 ACTGGAGAGCGTGAGAGAGAGCCAGTTGGAAGGGAGAAGCAGCGGAACAGTGTCCATGAA 296
Query 276 TGGAGAGGACTCCGTCTATGTTGGGGTTGGGAAAGGAGACTCGAGCATGGAGGCATTGCG 335
||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 297 CGGAGAGGACAACGTCTATGTTGGGGTTGGGAAAGGAGACTCAAGTATGGAGGCATTGCG 356
Query 336 TTGGGCTATTGACAATCTTATGACTTCTTCTTCTACTCTTCTTTTCCTCATCCATGTCTT 395
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTGGGCTATTGACAACCTAATGACTTCTTCTTCTACTCTTCTTTTCCTCATCCATGTCTT 416
Query 396 CCCTGAGACTCGCTTCATTCCTTATCCCTTGGGAAGGCTGACGAGGGAGAAAGCAAGTCA 455
|||||||||||||||||||||||| |||||||| ||| | |||||||||| |||||||||
Sbjct 417 CCCTGAGACTCGCTTCATTCCTTACCCCTTGGGGAGGATAACGAGGGAGAGAGCAAGTCA 476
Query 456 AGAACAAGTAGAAAGCTTTATGTCTCAGGAAAGGGAAAAGAGAAGAACTCTGTTGCTCAA 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AGAACAAGTAGAAAGCTTTATGTCTCAGGAAAGGGAAAAGAGAAGAACTCTGTTGCTCAA 536
Query 516 GTTCCTTCATGCCTGCTCTGCTTCCAAGG------TGAAGGTGGAGACAATACTGGTTGA 569
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 537 GTTCCTTCATGCCTGCTCTGCTTCTAAGGAACAGGTGAAGGTGGAGACAATACTGGTTGA 596
Query 570 GAGTGACTCCGTGGCTAAGGCTGTACAAGACCTCATTACCATTCTTAACATTAAGAAGCT 629
||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 597 GAGTGACTCGGTCGCTAAGGCTGTACAAGACCTCATTACCATTCTTAACATTAGGAAGCT 656
Query 630 TGTTCTTGGGATCGACAAGTCTAATGCTAGGAAAGCAACGACGATGAAAGGAAACAGTGT 689
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 657 TGTTCTTGGGATCGACAAGTCTAATGCTAGGAAAGCATCCACAATGAAAGGAAACAGTGT 716
Query 690 CCCTGAACTGATAATGAGGAGCTCCGCAGCAGACGTGTGTGAGGTTAAAGTCATATGCCA 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CCCTGAACTGATAATGAGGAGCTCCGCAGCAGACGTGTGTGAGGTTAAAGTCATATGCCA 776
Query 750 -GGGAAAAGAGATAAATATGGAGCAGGCGATGATCGCGAGCAGCCCAGCTAAGTCCCCAA 808
|||||| |||||||||||||||||| ||||||| | |||||||||||||||||||||||
Sbjct 777 AGGGAAA-GAGATAAATATGGAGCAGACGATGATGGAGAGCAGCCCAGCTAAGTCCCCAA 835
Query 809 TAGCACATCGACAAAAGAAAGATCAACCTGTTGACCCTTTTGCTTGCATTTGCTTTATCA 868
||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TAGTGCAGCGGCAAAAGAAAGATCAACCTGTTGACCCTTTTGCTTGCATTTGCTTTATCA 895
Query 869 GTAAGCCCAAAACTAACAGATAATAATGTAAAGAGAGATCAA-GATGCAGAGACAATACA 927
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 896 GTAAGCCCAAAACTAACAGATAAT---GTAAAGAGAGATCAAAGATGCAGAGACAATACA 952
Query 928 TTTGATG 934
|||||||
Sbjct 953 TTTGATG 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5