BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494206 Length=1061 Score E Sequences producing significant alignments: (Bits) Value AT5G47670.1 | Symbols: NF-YB6, L1L | nuclear factor Y, subunit ... 1253 0.0 > AT5G47670.1 | Symbols: NF-YB6, L1L | nuclear factor Y, subunit B6 | chr5:19315023-19316169 FORWARD LENGTH=937 Length=937 Score = 1253 bits (678), Expect = 0.0 Identities = 791/841 (94%), Gaps = 25/841 (3%) Strand=Plus/Plus Query 237 AGGATTACCAGCCAACTTTT-TGATGGCAGAGGGCAGTATGCGTCCCCCAGAATTCAACC 295 ||||||| |||| || |||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 104 AGGATTAGCAGCGAA-TTTTCTGATGGCAGAGGGCAGTATGCGTCCTCCAGAATTCAACC 162 Query 296 AGCCTAACAAAACCAGTAACGGTGGTGAAGACGAGTGCACGGTTAGGGAGCAAGACAGGT 355 ||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||| Sbjct 163 AGCCTAACAAAACCAGTAATGGTGGTGAGGAGGAGTGCACGGTGAGGGAGCAAGACAGGT 222 Query 356 TCATGCCTATTGCCAACGTGATACGGATCATGCGGAGGATCTTACCTGCCCACGCCAAGA 415 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 223 TCATGCCTATTGCCAACGTGATACGGATCATGCGGAGGATCTTACCTGCTCACGCCAAGA 282 Query 416 TCTCAGATGACTCCAAGGAGACGATCCAAGAGTGTGTCTCGGAGTACATCAGCTTCATAA 475 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 283 TCTCAGATGACTCCAAGGAGACGATCCAAGAGTGTGTTTCGGAGTACATCAGCTTCATAA 342 Query 476 CAGGGGAGGCTAATGAGCGGTGCCAGCGGGAACAGCGCAAGACCATCACTGCTGAGGACG 535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 343 CAGGGGAGGCTAATGAGCGGTGCCAGCGGGAACAGCGCAAGACCATCACTGCTGAGGACG 402 Query 536 TCTTGTGGGCAATGAGCAAGCTCGGTTTTGATGACTACATTGAACCCCTCACACTGTACC 595 |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 403 TCTTGTGGGCAATGAGCAAGCTCGGTTTTGATGACTACATCGAACCCCTCACGTTGTACC 462 Query 596 TCCACCGCTACAGAGAGTTGGAGGGTGAAAGAGGGGTTAGCTGCGGTGCTGGATCCGTTA 655 |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| Sbjct 463 TCCACCGCTACAGAGAGTTGGAAGGTGAAAGAGGGGTTAGCTGCAGTGCTGGGTCCGTTA 522 Query 656 CTATGACCAACGGCTTGGTGGTCAAGAGGCCTAATGGGACCATGACCGAGTATGGAGCCT 715 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 523 GTATGACCAACGGCTTGGTGGTCAAGAGGCCTAATGGGACCATGACCGAGTATGGAGCCT 582 Query 716 ACGGGCCTGTGCCAGGGATTCACATGGCGCAGTACCATTATCGTCATCAGAACGGGTTTG 775 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 583 ACGGGCCTGTGCCAGGGATTCACATGGCGCAGTACCATTATCGTCATCAGAACGGGTTTG 642 Query 776 TTTTCAGTGGTAACGAACCTAATACTAAGATGAGTGGTTCATCTTCAGCAGCAAGTGGCG 835 ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 643 TTTTCAGTGGTAACGAACCTAATTCTAAGATGAGTGGTTCATCTTCAGGAGCAAGTGGCG 702 Query 836 GCAGAGTTGAAGTATTTCCGAGTCAACAACATAAGTACTGAGAACAATGGCTAATAACAT 895 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 703 CCAGAGTTGAAGTATTTCCGACTCAACAACATAAGTACTGAGAACAATGGCTAATAACAT 762 Query 896 AGACAGCTGACAGAGCGAGAGTCATAACCGTTAGTAAGCGCAAGCTGTAGCTTATGAATT 955 ||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||| Sbjct 763 AGACAGCTGACAGAG------TCATAACTGTTAGTAGGTGCAAGCTGTAGCTTATGAATT 816 Query 956 CAAGTTTAAGCGAAAACAATGATGCTTTTT--------AT---CTA----GTTGAAAGAA 1000 ||||||||||||||||||||| |||||||| || ||| |||||||||| Sbjct 817 CAAGTTTAAGCGAAAACAATGCTGCTTTTTCTTTGTTTATTATCTATCTAGTTGAAAGAA 876 Query 1001 CATTGTGTTTTTCATCTGATCTGTCTTGTGGTAAAAAGTGTGTCAATAAAGCATTAGTTT 1060 ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 877 CATTGTGTTTTTCATCTGATCTGTCTTGTGGTAAA--GTATGTCAATAAAGCATTAGTTT 934 Query 1061 T 1061 | Sbjct 935 T 935 Score = 71.3 bits (38), Expect = 2e-11 Identities = 40/41 (98%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 1 GCTACCGCAAGCTGTCCGTGAACAACACCACTCCTTCACCA 41 ||||||||||||||||||||||||||||||||||||| ||| Sbjct 61 GCTACCGCAAGCTGTCCGTGAACAACACCACTCCTTCTCCA 101 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51957564075 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5