BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494206
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47670.1 | Symbols: NF-YB6, L1L | nuclear factor Y, subunit ... 1253 0.0
> AT5G47670.1 | Symbols: NF-YB6, L1L | nuclear factor Y, subunit
B6 | chr5:19315023-19316169 FORWARD LENGTH=937
Length=937
Score = 1253 bits (678), Expect = 0.0
Identities = 791/841 (94%), Gaps = 25/841 (3%)
Strand=Plus/Plus
Query 237 AGGATTACCAGCCAACTTTT-TGATGGCAGAGGGCAGTATGCGTCCCCCAGAATTCAACC 295
||||||| |||| || |||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 104 AGGATTAGCAGCGAA-TTTTCTGATGGCAGAGGGCAGTATGCGTCCTCCAGAATTCAACC 162
Query 296 AGCCTAACAAAACCAGTAACGGTGGTGAAGACGAGTGCACGGTTAGGGAGCAAGACAGGT 355
||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||
Sbjct 163 AGCCTAACAAAACCAGTAATGGTGGTGAGGAGGAGTGCACGGTGAGGGAGCAAGACAGGT 222
Query 356 TCATGCCTATTGCCAACGTGATACGGATCATGCGGAGGATCTTACCTGCCCACGCCAAGA 415
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 223 TCATGCCTATTGCCAACGTGATACGGATCATGCGGAGGATCTTACCTGCTCACGCCAAGA 282
Query 416 TCTCAGATGACTCCAAGGAGACGATCCAAGAGTGTGTCTCGGAGTACATCAGCTTCATAA 475
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 283 TCTCAGATGACTCCAAGGAGACGATCCAAGAGTGTGTTTCGGAGTACATCAGCTTCATAA 342
Query 476 CAGGGGAGGCTAATGAGCGGTGCCAGCGGGAACAGCGCAAGACCATCACTGCTGAGGACG 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CAGGGGAGGCTAATGAGCGGTGCCAGCGGGAACAGCGCAAGACCATCACTGCTGAGGACG 402
Query 536 TCTTGTGGGCAATGAGCAAGCTCGGTTTTGATGACTACATTGAACCCCTCACACTGTACC 595
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 403 TCTTGTGGGCAATGAGCAAGCTCGGTTTTGATGACTACATCGAACCCCTCACGTTGTACC 462
Query 596 TCCACCGCTACAGAGAGTTGGAGGGTGAAAGAGGGGTTAGCTGCGGTGCTGGATCCGTTA 655
|||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||
Sbjct 463 TCCACCGCTACAGAGAGTTGGAAGGTGAAAGAGGGGTTAGCTGCAGTGCTGGGTCCGTTA 522
Query 656 CTATGACCAACGGCTTGGTGGTCAAGAGGCCTAATGGGACCATGACCGAGTATGGAGCCT 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GTATGACCAACGGCTTGGTGGTCAAGAGGCCTAATGGGACCATGACCGAGTATGGAGCCT 582
Query 716 ACGGGCCTGTGCCAGGGATTCACATGGCGCAGTACCATTATCGTCATCAGAACGGGTTTG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 ACGGGCCTGTGCCAGGGATTCACATGGCGCAGTACCATTATCGTCATCAGAACGGGTTTG 642
Query 776 TTTTCAGTGGTAACGAACCTAATACTAAGATGAGTGGTTCATCTTCAGCAGCAAGTGGCG 835
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 643 TTTTCAGTGGTAACGAACCTAATTCTAAGATGAGTGGTTCATCTTCAGGAGCAAGTGGCG 702
Query 836 GCAGAGTTGAAGTATTTCCGAGTCAACAACATAAGTACTGAGAACAATGGCTAATAACAT 895
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 703 CCAGAGTTGAAGTATTTCCGACTCAACAACATAAGTACTGAGAACAATGGCTAATAACAT 762
Query 896 AGACAGCTGACAGAGCGAGAGTCATAACCGTTAGTAAGCGCAAGCTGTAGCTTATGAATT 955
||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||
Sbjct 763 AGACAGCTGACAGAG------TCATAACTGTTAGTAGGTGCAAGCTGTAGCTTATGAATT 816
Query 956 CAAGTTTAAGCGAAAACAATGATGCTTTTT--------AT---CTA----GTTGAAAGAA 1000
||||||||||||||||||||| |||||||| || ||| ||||||||||
Sbjct 817 CAAGTTTAAGCGAAAACAATGCTGCTTTTTCTTTGTTTATTATCTATCTAGTTGAAAGAA 876
Query 1001 CATTGTGTTTTTCATCTGATCTGTCTTGTGGTAAAAAGTGTGTCAATAAAGCATTAGTTT 1060
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 877 CATTGTGTTTTTCATCTGATCTGTCTTGTGGTAAA--GTATGTCAATAAAGCATTAGTTT 934
Query 1061 T 1061
|
Sbjct 935 T 935
Score = 71.3 bits (38), Expect = 2e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 1 GCTACCGCAAGCTGTCCGTGAACAACACCACTCCTTCACCA 41
||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GCTACCGCAAGCTGTCCGTGAACAACACCACTCCTTCTCCA 101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51957564075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5