BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494214
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47610.1 | Symbols: | RING/U-box superfamily protein | chr5... 950 0.0
> AT5G47610.1 | Symbols: | RING/U-box superfamily protein | chr5:19301188-19301913
REVERSE LENGTH=726
Length=726
Score = 950 bits (514), Expect = 0.0
Identities = 577/607 (95%), Gaps = 5/607 (1%)
Strand=Plus/Plus
Query 1 AAGATGCGTTTGCTAGTAGAAGAAGTAGCTTCACCATTGCCCTCTGCTTCAACTCCAACA 60
||||||||||||||||||| ||||| ||||||||||||| |||||||| |||||||||||
Sbjct 12 AAGATGCGTTTGCTAGTAGCAGAAGCAGCTTCACCATTGTCCTCTGCTGCAACTCCAACA 71
Query 61 TGTAACTCTCATGCTTGCAGATGGAAGCCTTACTCAAACTCTACTGACTTCACAGCTAAT 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TGTAACTCTCATACTTGCAGATGGAAGCCTTACTCAAACTCTACTGACTTCACAGCTAAT 131
Query 121 GCATCAGTCCTTCTCATCCTTGTCATCTCTGCTCTCATTTGTGCTCTCTCTCTTTACGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 GCATCAGTCCTTCTCATCCTTGTCATCTCTGCTCTCATTTGTGCTCTCTCTCTTTACGCT 191
Query 181 GCAATCCGTTGCTTTCTCCGACCAACCCTCGAGACTGAAGACGACCACAAGCCTGACCCT 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 GCAATTCGTTGCTTTCTCCGACCAACCCTCGAGACTGAAGACGACCACAAGCCTGACCCT 251
Query 241 GAAGCAGCTGCTTCATCCACTGCAACAACTCCTACGCTTGTCTACTCCTCCGACCTTGAA 300
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 252 GAAGCAGCTGCTTCATCCACTCCAACAACTCCTACACTTGTCTACTCCTCCGACCTTGAA 311
Query 301 CTCGCAGGAGCTGAAGCAGAGTGTGCCATTTGCTTGTCGGAATTCGAACAAGGAGAGAGC 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 312 CTCGCAGGAGCTGAAGCAGAGTGTGCCATTTGCTTGTCGGAATTTGAACAAGGAGAAAGC 371
Query 361 ATCCAAGTGCTAGAGAAATGCCAACATGGTTTCCATGTTAAGTGTATCCACAAATGGCTC 420
|| |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 372 ATTCAAGTGCTGGAGAAATGTCAGCATGGTTTCCATGTTAAGTGTATCCACAAATGGCTC 431
Query 421 TCTACTCGCTCCTCCTGTCCCACTTGCCGGACTTCTATCTTCACACAACACTCGGAAACA 480
||||||||||||||||||||||||||| | |||||||||||| |||||||||| |||||
Sbjct 432 TCTACTCGCTCCTCCTGTCCCACTTGCAGAACTTCTATCTTCTCACAACACTCTGAAACT 491
Query 481 CCTTCAAGCCAGATCAATGCTTAGCTTCTTTATTTTTAATCTTGTCTTTTCCAAA-GCTT 539
||||||||||| ||||||||||||||||||| |||| |||||||| ||||||||| ||||
Sbjct 492 CCTTCAAGCCACATCAATGCTTAGCTTCTTT-TTTT-AATCTTGT-TTTTCCAAAAGCTT 548
Query 540 TAGAGTTGTATCATGTTTTGCTTGAGACTAGCCCTGTTTCTGTTTTGTATTATTAAGTAA 599
||||||||||||||||||||||||||| || |||||| |||| | |||||||||| ||||
Sbjct 549 TAGAGTTGTATCATGTTTTGCTTGAGATTA-CCCTGTATCTGCTCTGTATTATTAGGTAA 607
Query 600 CGTAGAC 606
|||||||
Sbjct 608 CGTAGAC 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5