BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494215
Length=2554
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47580.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 3943 0.0
AT4G17250.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1000 0.0
AT5G02650.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 117 6e-25
> AT5G47580.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G17250.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:19294846-19297418 REVERSE LENGTH=2573
Length=2573
Score = 3943 bits (2135), Expect = 0.0
Identities = 2435/2577 (94%), Gaps = 31/2577 (1%)
Strand=Plus/Plus
Query 1 GAGTTTTTCCCGGTTGATCTGCGATTCAACAGTGTCTAATCCGAAATTTAGTTGAAATGG 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 GAGTTTTTCCCGGTTGATCTGCGATTCAACAGTGTCT-ATCCGAAATTTAGTTGAAATGG 59
Query 61 TCATAGAAGAGTGTGGTAG-AACGTTGGAA--T-T--T-----T--GTCAGAGAAGTCAA 107
|||||||||||||| |||| || ||||||| | | | | ||||||||||||||
Sbjct 60 TCATAGAAGAGTGTAGTAGAAAGGTTGGAATTTGTGCTCAAAATCGGTCAGAGAAGTCAA 119
Query 108 AGTTTGCTACTTTTCCAGTCTCTAGAATGATGTCAACAAGATCACTCATTTCCATGGAGT 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGTTTGCTACTTTTCCAGTCTCTAGAATGATGTCAACAAGATCACTCATTTCCATGGAGT 179
Query 168 CAACTTGAAGAAGAGCTTTT-CGATCAAATCCTTGAATTCGATTGATGGGTATCCTCGGC 226
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAACTTGAAGAAGAGCTTTTTCGATCAAATCCTTGAATTCGATTGATGGGTATCCTCGGC 239
Query 227 TGCGACGCCCATGGCGATTTGAACGATGCAGAGTTCAGCAAGCCCTTACCTTTGATTGGT 286
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 240 TGCGACGCCCATGGCGATTTGAACGATGCAGAGTTCAGCAAACCCTTACCTTCGATTGGT 299
Query 287 ATCTACGTTGCCGTAGCTTCACTCATCTGTGGTCTAGCCATGGCCGCTGATCTTATTCAC 346
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 300 ATCTACGTTGCCGTAGCTTCACTCATCTGTGGTCTAGCCATGGCCGCCGATCTTATACAC 359
Query 347 GGCTTCAGACACCGCAAATTCTGGTTTCCGTGTAAGTTCTTCTCTCTCAACGCCACTTCT 406
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 GGCTTCCGACACCGCAAATTCTGGTTTCCCTGTAAGTTCTTCTCTCTCAACGCCACTTCT 419
Query 407 CTGACTTTCATCGCTGTCGGAATCAAACTCTCTGTGGATCTCAACACTTCAATGCCGAGT 466
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 CTGACTTTCATCGCTGTCGGAATCAAACTCTCTGTGGATCTCAACACTTCCATGCCGAGT 479
Query 467 CGTCAGGATCAGTTAGCTAAGCTCAGCAGCACCGTCTTTGTGTGTACGGTGATGGGCAAT 526
|||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||
Sbjct 480 CGTCAGGATCAGTTAGCTAAACTCAGCAGCACCGTCTTTGTATGTACTGTGATGGGTAAT 539
Query 527 TCGATGCCTTCTCTGGGTATAATGGACAACAATGATCTCCTTATGAATCTTATGGCTTTA 586
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 540 TCGATGCCTTCTCTGGGTATTATGGACAACAATGATCTCCTCATGAATCTTATGGCTTTA 599
Query 587 GGGATTCTTGTAATCACTGATGTTGTTAACATCTGTATTCAGTTGGGTACTGGTGCGATT 646
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGGATTCTTGTCATCACTGATGTTGTTAACATCTGTATTCAGTTGGGTACTGGTGCGATT 659
Query 647 TATGTTTTCTCTGAAGAACATTTTCTGGTCGTACTTCTCATGCTTCTTATGCTTATGATC 706
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TATGTTTTCTCTGAGGAACATTTTCTGGTCGTACTTCTCATGCTTCTTATGCTTATGATC 719
Query 707 TTCTGTTTCTCGGCCACTACTGTTCCCACCACGAAAAGAATCTTGGAG-GCTAAGTACAA 765
|| |||||||||||||| || |||||||| |||||||||||||||||| | |||||||||
Sbjct 720 TTGTGTTTCTCGGCCACCACAGTTCCCACTACGAAAAGAATCTTGGAGAG-TAAGTACAA 778
Query 766 GAAGAGGTACGACGTTGCCATGAAGTGTCCTTTGGCTACAGAGAGAACTGTTGCTAAGAA 825
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 779 TAAGAGGTACGACGTTGCTATGAAGTGTCCTTTGGCTACAGAGAGAACAGTTGCTAAGAA 838
Query 826 AATTCAGCAAGATTTGTCAAAGTTCTGGATGATGGCTCATACTAGTAGCCCTCAATTCGT 885
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 839 AATTCAGCAAGATTTGTCAAAGTTTTGGATGATGGCTCATACTAGTAGCCCTCAATTCGT 898
Query 886 GATGGCTCGTTCTGTCACGTGCACTGCTTCTGGTTTCTTCTGTCTTTTGAGTGCCATTAC 945
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 GATGGCTCGTTCTGTCACGTGCACTGCTTCTGGTTTCTTCTGTCTCCTGAGTGCCATTAC 958
Query 946 GCTTGGTGAAGCCATGGTGAGGAGTTACTTTTTAAGACCAAGGTCACTTGGGTTCTGCCA 1005
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GCTTGGTGAAGCTATGGTTAGGAGTTACTTTTTAAGACCAAGGTCACTTGGGTTCTGCCA 1018
Query 1006 TGGAGATTCTGATTACAAATGGTCAACCTCTCTGGTTCTTGTTTGCCAGACTACTGCCGT 1065
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 1019 TGGAGATTCTGATTACAAATGGTCAACTTCTCTGGTTCTTGTTTGCCAGACTACTACTGT 1078
Query 1066 GACC-ATAGGGACCATTGCTCCTGCGATCAGATGGTTCACTGCTGTGAACTTCAGGTGTC 1124
| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1079 -AGCTATAGGGACCATTGCTCCTGCGATCAGATGGTTCACGGCTGTGAACTTCAGGTGTC 1137
Query 1125 CTATTAGAGGAAAGAAGTATTATAGGGATGAGTTTAGAGTAGAGAGTTACTGGACACATT 1184
| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1138 CGATTAGAGGAAAGAAGTATTATAGAGATGAGTTTAGAATAGAGAGTTACTGGACACATT 1197
Query 1185 GGTTCTCAGAGAAGAAGCAACATCCCTTAAGCCTTTGGATCCTCAAAGATCGCAGATACA 1244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1198 GGTTCTCAGAGAAGAAGCAACATCCCTTAAGCCTTTGGATCCTCAAAGAACGCAGATACA 1257
Query 1245 GGAAGATTGCGCACAATGCAAAACGCTGGATATTGGATGTATGTATTGTGATACAGTATG 1304
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GGAAGACTGCACACAATGCAAAACGCTGGATATTGGATGTATGTATTGTGATACAGTATG 1317
Query 1305 TGATTGTGTTTGGTAGCAAAATTATCCGTTACATCTCGGTTTTCTGTGTGGGTAAGATCT 1364
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1318 TGATTGTGTTTGGTAGCAAAATTATCCGTTACATCTCGGTATCCTGTGTGGGTAAGATCT 1377
Query 1365 TGATGTGCTGTTATTTTGTCTTAAGGACCAGTAATACTATCACACACAGTGAGTCAGAAA 1424
|| |||||||| |||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TGTTGTGCTGTCATTTCGCCTTAAGGACCAGTAATACTATCACACACAGTGAGTCAGAAA 1437
Query 1425 AATCCGATTCTAATCCAAGCTCGAGACAGGACCTTGCGAGTTTTGTCCTGCATCTTGAAG 1484
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1438 AATCCGATTCAAATCCAAGCTCGAGACAGGACCTAGCGAGTTTTGTCCTGCACCTTGAAG 1497
Query 1485 GAGAGGATCCGCTGGTGGATGTGATGGTGCGGAGCAACCGGGAAGCCACAGATCATTGGA 1544
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1498 GAGAGGACCCGCTGGTGGATGTGATGGTGCGGAGCAACCGGGAAGCGACAGATCATTGGA 1557
Query 1545 TAGAGAATGGCAGAAAGAAACAACCAGTGAATCTGATAGAGCTTTTGGAAGCAACAACAC 1604
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TAGAGAAGGGCAGAAAGAAACAACCAGTGAATCTGATAGAGCTTTTGGAAGCAACAACAC 1617
Query 1605 CCATTTCAAAAGGATTTGATGGGATTGCAGAGTTTGACAGCAACAAAGTGGCTTCTCTTG 1664
||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |
Sbjct 1618 CCATTTCAAAAGGATTTGAAGGGATTGCAGAGTTCGACAGCAACAAGGTGGCTTCTCTGG 1677
Query 1665 CCCACGGAGAGCCACCCAATTGTTGGGCTCTCCCGCTGGTAACACTCACAAGCATCGCTG 1724
|||||||||| || ||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 1678 CCCACGGAGAACCGCCCAATTGTTGGGCTCTCCCGCTTGTAACACTCACAAGTATTGCTG 1737
Query 1725 TTGCTCTTCCTGACATCAAGCCCCCCTCCCTCAAGAAGTTACTCAATGCAGTCAACGAGG 1784
|||| ||||| |||||||||||| ||||||| ||||||||||||||||| ||||||||||
Sbjct 1738 TTGCACTTCCCGACATCAAGCCCTCCTCCCTGAAGAAGTTACTCAATGCTGTCAACGAGG 1797
Query 1785 CACTGGACTTTGTCAACAAGTTTGAACGCGTCCTGGATACCGGAGGAGAGTCGGCTAACC 1844
||||||| | |||||||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct 1798 CACTGGAATATGTCAACAAGTTTGAATGCGTCCTGGATACCGGAGGAGAGTCAGTTAACC 1857
Query 1845 TCAGGAAAGCTGCTGAGGTAGTTTGGCTAGGGGCTGATCTCTATCACAAGTGGTTTGATG 1904
||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct 1858 TCAGGAAAGCTGCTGAGGTCGTTTGGCTAGGTGTTGATCTCTATCACAAGTGGTTTGATG 1917
Query 1905 TGGATCTTAGGAAACTATCAAAGCATCAAAGAAATCCAGAAGAAACCGTTCGTGAGCTCA 1964
|||||||| |||||||||||||||| ||||||||||||||||||||| |||| ||||| |
Sbjct 1918 TGGATCTTCGGAAACTATCAAAGCAACAAAGAAATCCAGAAGAAACCCTTCGGGAGCTGA 1977
Query 1965 TGGAAATCGCGAAGAAAGAGTTCTCAGAGTCATGGCAGATGAACCTGATGGTGTGCATGA 2024
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1978 TGGAAATCGCGAAGAAAGAGTTCTCAGAGTCATGGCAGATGAACCTGATGGTATGCATGA 2037
Query 2025 AGCACAAGCCCTCTCACTGGCCCATCAAGACTCTAGCGGCAAACTCCATGTACCGAATAT 2084
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 2038 AGCACAAGCCCTCTCACTGGCCCATCAAGACTCTAGCAGCCAACTCCATGTACCGAATCT 2097
Query 2085 GTCAAACAATTCTGCTCAA-TTACGAATCAAGAGACTACGGAACAGGGGAAGCCCTATTG 2143
||||||||||||| || || |||||||||||||||||| |||||||||||||| || |||
Sbjct 2098 GTCAAACAATTCTACT-AACTTACGAATCAAGAGACTATGGAACAGGGGAAGCTCTGTTG 2156
Query 2144 AGAAAGCTGGAAAGCACAATATCAGACATAGTTTCAGGTTGTTTTTGCAACGTAGCACAA 2203
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2157 AGAAAGCTGGAAAGCACAATATCAGACATAGTGTCAGGTTGCTTTTGCAACGTAGCACAA 2216
Query 2204 GTGATATCCGTCAAGTGTTTGGTGTCGGCTGTAGAAGTGAGGGAAGAATCAGTGAGAGGA 2263
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 2217 GTGATATCCGTCAAGTGTTTGGTGTCAGCTGTAGAAGTAAGGGAAGAATCAGTAAGAGGA 2276
Query 2264 GCGGCTCTGCATCTGGGAAGAACAGAAAAGATTCTAGAGATATTAGAGAGAAGAAGCTTA 2323
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 2277 GCAGCTCTGCATCTGGGAAGAACAGAGAAGATTCTAGAGATCTTAGAGAGAAGAAGGTTA 2336
Query 2324 CCTAAATTGAGATGTGATCAGATGAAGAACATCGATGAATGGAGAGCATTCTACAAGATA 2383
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2337 CCTAAATTGAGATGTGATCAGATGAAGAACATCGACGAATGGAGAGCATTCTACAAGATT 2396
Query 2384 AACTCTT-CGGAATGT-AGTAATAAGAGCAACACAGTTTATCAGGAGTCGGACGAACTGC 2441
||||||| || ||||| | |||||| | ||| |||||||||| || |||||||||||||
Sbjct 2397 AACTCTTGCG-AATGTGA-TAATAACAACAAGACAGTTTATCCCGACTCGGACGAACTGC 2454
Query 2442 GCCTAACTGTTGAATAGAT-AT-GAT--GTTAAAGATTGTAGCTTTTTCTGTTTTTGTAC 2497
|||| |||||||| ||| | || ||| ||||||| ||||||||||||||||||||||||
Sbjct 2455 GCCTCACTGTTGAGTAGTTTATAGATATGTTAAAGGTTGTAGCTTTTTCTGTTTTTGTAC 2514
Query 2498 CTCTGTGTATTCACACCACATGAATGTCATTGTATATAGTAAGAATCTGAAGCTTTT 2554
|| ||||||||||| | |||||||| || ||||||||||||||||||||||||||||
Sbjct 2515 CTTTGTGTATTCAC-C-ACATGAATCTCTTTGTATATAGTAAGAATCTGAAGCTTTT 2569
> AT4G17250.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G47580.1);
Has 31 Blast hits to 31 proteins in 6 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:9671051-9673417
FORWARD LENGTH=2367
Length=2367
Score = 1000 bits (541), Expect = 0.0
Identities = 1651/2166 (76%), Gaps = 159/2166 (7%)
Strand=Plus/Plus
Query 227 TGCGACGCCCATGGCGATTTGAA-CGATGCAGAGTTCAGCAAGCCCTTACCTTTGATTGG 285
|||||| | ||||| || | || ||| |||||||||||||||| || || | || ||
Sbjct 60 TGCGACTCACATGGAAATCT-AAGCGACACAGAGTTCAGCAAGCCGTTGCCATCCATAGG 118
Query 286 TATCTACGTTGCCGTAGCTTCACTCATCTGTGGTCTAGCCATGGCCGCTGATCTTATTCA 345
| | || || || | ||||||||| |||||||| | || ||| | |||||| ||||
Sbjct 119 TGTATATGTCGCTGCAGCTTCACTGATCTGTGGAGTTGCTATGTTTTCCGATCTTCTTCA 178
Query 346 CGGCTTCAGACACCGCAAATTCTGGTTTCCGTGTAAGTTCTTCTCTCTCAACGCCACTTC 405
||||||| | ||||| || ||||||||||| || || ||||||||||||||||| || |
Sbjct 179 CGGCTTCCGGCACCGTAAGTTCTGGTTTCCTTGCAAATTCTTCTCTCTCAACGCTACCAC 238
Query 406 TCTGA-CTTTCATCGCTGTCGGAATCAAACTCTC-TGTGGATCTCAACACTTCAATGCCG 463
||| | |||| ||| |||| | |||||||||| | |||||||||||||||| |||||
Sbjct 239 TCTCACCTTT-ATCTCTGTATGCGTCAAACTCTCAT-TGGATCTCAACACTTCTATGCCT 296
Query 464 AGTCGTCAGGATCAG-TTAGCTAAGCTCAGCAGCACCGTCTTTGTGTGTACGGTGATGGG 522
||||| || |||||| || ||||| |||||||||| |||||| || || || ||||| ||
Sbjct 297 AGTCGCCAAGATCAGCTT-GCTAAACTCAGCAGCAGCGTCTTCGTATGCACCGTGAT-GG 354
Query 523 C-AATTCGATGCCTTCTCTGGGTATA-ATGGACA-ACAATGATCTCCTTATGAATCTTAT 579
| ||||| ||||||||||| ||| || |||| || ||| |||||||| ||||| || |
Sbjct 355 CTAATTCCATGCCTTCTCTTGGT-TACATGGTCACGCAA-GATCTCCTCATGAACCTCAC 412
Query 580 GGCT-TTAGGGATTCTTGTAATCACTGATGTTGTTAACATCTGTATTCAGTTGGGTACTG 638
|||| || |||||||| || ||||| |||||||||||||||||||| || |||||||| |
Sbjct 413 GGCTCTT-GGGATTCTAGTCATCACCGATGTTGTTAACATCTGTATCCAATTGGGTACAG 471
Query 639 GTGCGATTTATGTTTTCTCTGAAGAACATTTTCTGGTC-GTACTTCTCATGCTTCTT-AT 696
| || || ||||| ||| || ||||||| ||||||| || ||||||||||| || ||
Sbjct 472 GAGCTATATATGTGTTCCCTCAAGAACACGCTCTGGTCATTA-TTCTCATGCTT-TTGAT 529
Query 697 GCTTATGATCTTCTGTTTCTCGGCCACT-ACTGTTCCCA-CCACGAAA-AGAATCTTGGA 753
| |||||||||| ||||||| || | | |||| ||||| |||| ||| | |||||||
Sbjct 530 GTTTATGATCTTGAGTTTCTCTGCTA-TCACTG-TCCCAGCCAC-AAAGCGTTTCTTGGA 586
Query 754 GGCT-AAGTACAAGAAGAGGTACGACG-TTGCCATG-A--AGTGTCCTTTGGCTAC--AG 806
||| |||||||||||||| ||||| | |||| || | ||||||||| | ||| ||
Sbjct 587 -GCTCAAGTACAAGAAGAGATACGA-GTTTGCTTTGAAGCAGTGTCCTTCGTATACAGAG 644
Query 807 AG-AG-A-A-CTGTTGCTAAGAAAATT-CAGCAAGATTTG-TCAAAGTTCTGGATGATGG 860
|| || | | ||| ||||| || || ||||| || | ||| |||||||||||||
Sbjct 645 AGAAGAAGAGGGGTTCCTAAG---CTTAAAG-AAGATCTGATGAAA-TTCTGGATGATGG 699
Query 861 CTCATACTAGTAGCCCTCAATTCGTGATGGCTCGTTCTGTCACGTGCACTGCTTCTGGTT 920
|||| ||| ||||||||| || ||||||||||| ||||| || ||||| | ||||||
Sbjct 700 CTCACACTTCTAGCCCTCAGTTTGTGATGGCTCGCTCTGTTACTTGCACCACCACTGGTT 759
Query 921 TCTTCTGTCTT-TTGAGTGCCATTACGCTTGG-TGAAGCCATGGTGAGGAGTTACTTT-T 977
|| ||||| || |||| ||| || || |||| |||||||||||| || ||||||| |
Sbjct 760 TCCTCTGT-TTCTTGATTGCAATCAC-ATTGGCTGAAGCCATGGTCCGGTCTTACTTTCT 817
Query 978 TAAGACCAAGGTCACTTGGGTTCTGCCATGGAGATTCTGATTACAAATGGTCAACCTCTC 1037
| | ||| ||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 818 TCA-ACCCCGGTCACTAGGGTTCTGCAATGGAGATTCTGATTACAAATGGTCAACCACTT 876
Query 1038 TGGTTCTTGTTTGCCAGACTA-CTGCCGTGACCATAGGGACCATTGCTCCTGCGATCAGA 1096
||||||| || | |||||| | |||| ||| ||||||| ||| ||||||| |||| ||||
Sbjct 877 TGGTTCTAGTCTCCCAGAC-AGCTGCAGTGGCCATAGGAACCGTTGCTCCAGCGAGCAGA 935
Query 1097 TGGTTCACTGCTGTGAACTTCAGGTGTCCTATT-AGAGGA-AAGAAGTATTAT-AGGGAT 1153
||| ||| || |||||||| |||||||| ||| ||| | ||||| | || | | |||
Sbjct 936 TGGCTCAAGGCAGTGAACTTTAGGTGTCC-ATTTAGAA-ACAAGAAATCTT-TGAAAGAT 992
Query 1154 GAGTTTAGAGTAGAGAGTTACTGGACACATTGGT-TCTCAGAGAAGAA-GCAACATCCCT 1211
||||| |||||||||||||| ||| | | || | || | |||||||| | ||| |||||
Sbjct 993 GAGTTAAGAGTAGAGAGTTATTGGGTAGAGTG-TCTCGCTGAGAAGAAAG-AACGTCCCT 1050
Query 1212 T-AAGCCTTTGGATCCTCAAAGATCGCAG-ATACAGGAAGATTGCGCACAA-TGCAAAAC 1268
| || | ||||||| ||| | | |||| | | ||||||| |||| ||| | | ||| |
Sbjct 1051 TGAA-CTTTTGGATGCTCCATGGTCGCTGCAG-CAGGAAGCTTGCACACGACTT-AAACC 1107
Query 1269 GCTGGATA-TTGGATGTATGTATTGTGATACAGTATG-TGATTGTGTTTGG-TAGCAAAA 1325
| | ||| ||| || | || |||| | |||||||| | || ||| | || ||||||
Sbjct 1108 GGTTGATGCTTG-ATATCTGCATTGCAACACAGTATGGT-ATAGTGCT-GGCTAGCAAGT 1164
Query 1326 TTATCCGTTACATCTCGGTTT-TCTGTGTGG-GTAAGA-TCTTGATGTGCTGTTAT--TT 1380
|| |||||| |||| |||| | | ||| | | ||| || ||||| | || |||| | ||
Sbjct 1165 TTCTCCGTTTCATCACGGTCTAT-TGT-TCGAGTA-GAATCTTGCTATGTTGTTTTCATT 1221
Query 1381 TGTC-TT-AAGGACCAGTAATACTATCACACACAG-TGAGTCAGAAAAATCCGATTCTAA 1437
| | || || | ||| || || | || || | |||||| |||| ||| ||
Sbjct 1222 TCACCTTCAA--A--AGTGATTCTGTTGCAAAC-GCTGAGTCC------TCCGGTTCAAA 1270
Query 1438 TCCA--AGCTCGAGACAGGACCTTGCGAGTTTTGTCCTGCATCTTGAAGGAGAGGATCCG 1495
|||| | | | ||||| | || || || | ||||||||||||||||||| |
Sbjct 1271 TCCATCAAC-C-AGACA--A--TT-CG--TT----C-TGCATCTTGAAGGAGAGGAGGAG 1316
Query 1496 CTGGTGGA-TGTGATGGTGCGGAGCAACCGGGAAGCCACAGATCA-TTGGATAGAGAATG 1553
||||||| | |||| || |||||||| | |||||||| || ||| ||| | || |
Sbjct 1317 ATGGTGGACTAC-ATGGCACGTAGCAACCGTGTGGCCACAGACCACTTG-ATACAAAAGG 1374
Query 1554 G-CAGAAAGAAACAACCAGTGAATCT-GATAGAGCTTTTGGAAGCAACAACACCCATTTC 1611
| | ||| ||||||||| || || || ||||||||| ||||| |||||||| ||| ||
Sbjct 1375 GTCGGAA-GAAACAACCTGTAAA-CTTGATAGAGCTCTTGGAGGCAACAACTTTCATCTC 1432
Query 1612 AAAAGGATTTGATGGGATT-GCAGAGTTTGACAGCAACAAAGTGGCTTCTCTTGCC-CAC 1669
|||||||||||| |||||| | ||| ||||||||| || | || ||||||| ||| |
Sbjct 1433 AAAAGGATTTGAAGGGATTCG-AGATTTTGACAGCGACGAGGTTTCTTCTCTGGCCTCT- 1490
Query 1670 GGAGAGCCACCCAATTGTTGGGCTCTCCCGCTGGTAACACTCACAAGCATCGCTGTTGCT 1729
||||||||||| ||| ||||||| || || |||||||||| || || |||||||| |||
Sbjct 1491 GGAGAGCCACCTAATAGTTGGGCCCTTCCATTGGTAACACTGACGAGTATCGCTGTCGCT 1550
Query 1730 CTTCCTGACATCAAGCCCCCCTCCCTCAAGAAGTTACTCAATGCAGTCAACGAGGCACTG 1789
|||||| |||||||||| ||| |||||||||||| | || || || ||||||||| ||
Sbjct 1551 CTTCCTAACATCAAGCCTTGCTCGCTCAAGAAGTTAGTGAAAGCTGTAAACGAGGCATTG 1610
Query 1790 GACTTTGTCAACAAGTTTGAACGCG-TCCTGGATACCGGAGGAGAGTCGGCTAACCTCAG 1848
| || |||||||||||| ||| | | || | || | || |||||||| |||||| |||
Sbjct 1611 GTCTATGTCAACAAGTTCGAA-GAGGTCTTAGACATCGAAGGAGAGTTAGCTAACAGCAG 1669
Query 1849 GAAAGCTGCTGAGGTAGTTTGGCTAGGGGCTGATCTCTATCACAAGTGGTTTGATGTGGA 1908
||||||||| || || |||||| |||| | ||||||||| || || ||| | | |||||
Sbjct 1670 GAAAGCTGCAGAAGTTGTTTGGTTAGGAGTTGATCTCTACCATAAATGGCTCAACGTGGA 1729
Query 1909 TCTTAGGAAACTATCAAAGCATCAAAG-AAATC-C-AGAAGAAACCGTTCGT---GAGCT 1962
|||| | |||||||| ||||| || || ||| | | | | ||| |||| | |||||
Sbjct 1730 TCTTCGAAAACTATCCAAGCAACATAGCAAAACACCACAGGAA---GTTCTTAAAGAGCT 1786
Query 1963 CATGGAAATCGCG-AAGAAAGAGTTCT-CAGAGTCATGGCAGATGAACCTGATGGTGTGC 2020
| || || || || |||||||| | ||||||||||| ||| || | ||| | |||
Sbjct 1787 GGTAGATATAGCACAA-AAAGAGTT-TACAGAGTCATGGGAGAAAAATCGGATACTATGC 1844
Query 2021 ATGAAGCACAAGCCCTCTCACTGGCCCATCAAGACTCTAGCGGCAAACTCCATGTACCGA 2080
|||||||| |||||||| ||||||||||||||||||| ||| |||||||| |||||||||
Sbjct 1845 ATGAAGCATAAGCCCTCGCACTGGCCCATCAAGACTCAAGCAGCAAACTCAATGTACCGA 1904
Query 2081 AT-ATGTCAAACAATTCTGCTCAATTACGAATCAAGAGACTACGGAA-CAGGGGAAGCC- 2137
|| | | ||||| || || | || |||||||||||| || | ||| ||| ||| | |
Sbjct 1905 ATCA-GCCAAACCCTTTTGATGAAGTACGAATCAAGAAAC-ATTGAAACAGAGGA-GACT 1961
Query 2138 CTATTGAGAA-A-GCTGGAAA-GCACAATATCAGACATAGTTTCAGGTTGTTTTTGCAAC 2194
|| |||| || | | |||||| | | |||| |||||||| ||||| || |||||||||
Sbjct 1962 CTGTTGA-AAGATG-TGGAAAAG-ATGGTATCGGACATAGTATCAGGATGCTTTTGCAAC 2018
Query 2195 GTAGCACAAGTGATATCCG--TCAAGTGTTTGGTGT-CGGCTGTAGAAGTGAGGGAAGAA 2251
|||||||| || | | | ||||||||||| | | || || |||||||||||||
Sbjct 2019 ACGGCACAAGTTAT-TG-GAATGAAGTGTTTGGT-TACAGCAGTGGAAGTGAGGGAAGCG 2075
Query 2252 TCAGTGAGAGGAGCGGCTCTGCATCTGGGAAGAACAGAAAAGATTCTAGAGATATTAGAG 2311
|| ||||||| |||||| ||||| |||| |||||||| ||||| || ||||| ||||
Sbjct 2076 TCGGTGAGAGAAGCGGCAATGCATTTGGGGAGAACAGAGAAGATACTTGAGATCGTAGAC 2135
Query 2312 AGAAGA 2317
|| |||
Sbjct 2136 AGGAGA 2141
> AT5G02650.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Telomerase activating protein Est1 (TAIR:AT1G28260.2);
Has 20 Blast hits to 20 proteins in 2 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:597504-599786
FORWARD LENGTH=988
Length=988
Score = 117 bits (63), Expect = 6e-25
Identities = 74/79 (94%), Gaps = 2/79 (3%)
Strand=Plus/Plus
Query 2003 ATGAACCTGATGGTGTGCATGAAGCACA-AGCCCTCTCACTGGCCCATCAAGACTCTAGC 2061
|||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||||
Sbjct 744 ATGAACCTGATGGTGTGCATGAAGCACAGA-CCCTCTCACTGACCTATCAAGACTCTAGC 802
Query 2062 GGCAAACTCCATGTACCGA 2080
||| |||||||||||||||
Sbjct 803 GGCCAACTCCATGTACCGA 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126771864961
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5