BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494216
Length=584
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47570.1 | Symbols: | unknown protein; Has 30201 Blast hits... 915 0.0
> AT5G47570.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19292608-19294737
REVERSE LENGTH=710
Length=710
Score = 915 bits (495), Expect = 0.0
Identities = 561/591 (95%), Gaps = 11/591 (2%)
Strand=Plus/Plus
Query 1 TTGATTGGATTTTGGATCGAAACCTGAAAAGAGCGAAAATGGCTGGAAGATTGAGCGGTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 34 TTGATTGGATTTTGGATCGAAACCTGAAAAGAGCGAAAATGGCTGGAAGATTGAGCGGTG 93
Query 61 TGGCCTCACGAATCATGGGTGGAAACGGCGTCGTAGCCAGATCCGTCGGATCTTCTCTCC 120
| || ||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 94 TTGCGTCACGAATCATGGGTGGAAACGGCGTCGTTGCCCGATCCGTCGGTTCTTCTCTCC 153
Query 121 GTCAACGCGCCGGAATGGGTCTCCCCGTCGGCAAACACATCGTCCCCGATAAGCCGCTTT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 154 GTCAACGCGCCGGAATGGGTCTCCCCGTCGGCAAACACATCGTCCCCGATAAGCCGCTAT 213
Query 181 CGGTAAACGATGAGCTGATGTGGGACAACGGGACTGCGTTTCCAGAACCTTGCATAGATC 240
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 214 CGGTAAACGACGAGCTGATGTGGGACAACGGGACTGCGTTTCCAGAGCCTTGCATAGATC 273
Query 241 GGATTGCTGATACCGTTGGAAAGTATGAAGCATTGGCATGGTTGAGTGGCGGATTAGGGT 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 GGATTGCTGATACCGTCGGAAAGTATGAAGCATTGGCATGGTTGAGTGGCGGATTAGGGT 333
Query 301 TCTTTGCGGGTCTCGGTCTGCTCGCTGTTTTGAACGACAAAGCTTCAAAGGTTCCATTTA 360
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 334 TCTTTGTTGGTCTCGGTCTGCTCGCTGTTTTGAACGACAAAGCTTCTAAGGTTCCATTTA 393
Query 361 CACCGAGAGTGTATCCATATGACAACCTGAGAGTTGAGCTTGGAGGAGAGCCATAGAGAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 CACCGAGAGTGTATCCATATGACAACCTGAGAGTTGAGCTTGGAGGAGAGCCATAGAGAC 453
Query 421 --A---A-GTGATTTGCTCATCAAAAACTCAAA-CGTGTTTTCTTCACTGCTTTGTTCTT 473
| | ||||| |||||||||||| | || ||||||||||||||||||||||||||
Sbjct 454 CCATCTAAGTGATCTGCTCATCAAAA-CAGGAAGCGTGTTTTCTTCACTGCTTTGTTCTT 512
Query 474 CTTCAAAATGTTTGTTGTTTCCTGCTTAGAACATGAAGACAAAAGAATAAAAAGAAGACT 533
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 513 -T--AAAATGTTTGTTGTTTCCTGCTTAGAACTTGAAGACAAAAGAATAAAAAGAAGACT 569
Query 534 TTGTTTTTACTATATGCGTTGTCTCTGTAATTAACAGTGACCAATGAGAGA 584
||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 570 TTGTTTTTATTATATGCGTTGTCTCTGTAATTAACAGTGACCAGTGAGAGA 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28080888173
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5