BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494217
Length=2157
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47560.1 | Symbols: ATTDT, ATSDAT, TDT | tonoplast dicarboxy... 3040 0.0
> AT5G47560.1 | Symbols: ATTDT, ATSDAT, TDT | tonoplast dicarboxylate
transporter | chr5:19287369-19290465 REVERSE LENGTH=2267
Length=2267
Score = 3040 bits (1646), Expect = 0.0
Identities = 2014/2184 (92%), Gaps = 55/2184 (3%)
Strand=Plus/Plus
Query 1 TTAAAAACAGAATAAACAGAATGAACGGTGGTGATGTCACCGTCGCCGGTTCCGACGA-C 59
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 99 TTAAAAACGGAATAAACAGAATGAACGGTGGTGATGTCACCGTCGCCGGATCCGACGATC 158
Query 60 GTGAAATCTCCGCTTTTACCAGTCGTCCATAATGATGAACCATTCGAACGACAAACGGTG 119
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 159 -TGAAATCTCCGCTCTTACCGGTCGTCCATAATGATGAACCATTCGAACGACAAACGGTG 217
Query 120 GGACAACAACTCCGGACAATATTCACGCCCAAGAATTGTTACATCGCTCTTGGTCCTCTT 179
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 218 GGACAACAACTTCGGACAATATTCACGCCCAAAAACTGTTACATCGCTCTTGGTCCTCTT 277
Query 180 CTTTGCGCCGTCGTGTGTCTATGCGTAGATCTCGGCGGAGATGACACGACGACGGCGAGG 239
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 278 CTTTGCGCCGTCGTGTGTCTATGCGTAGATCTCGGGGGAGATGAAACGACGACGGCGAGG 337
Query 240 AACATGCTCGGCGTTTTGGTGTGGATGTTCGCGTGGTGGTTGACGGAGGCCGTTCCGATG 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 AACATGCTCGGTGTTTTGGTGTGGATGTTCGCGTGGTGGTTGACGGAGGCCGTTCCGATG 397
Query 300 CCGATCACCTCCATGACGCCGCTCTTCCTCTTCCCTCTCTTTGGAATATCGGCGGCGGAT 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 398 CCGATCACCTCCATGACGCCGCTCTTCCTCTTCCCTCTCTTTGGTATATCGGCTGCGGAT 457
Query 360 GACGTGGCGAATTCTTACATGGATGACGTAATCTCCCTTGTCCTCGGCAGCTTCATACTC 419
||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 458 GACGTAGCAAATTCTTACATGGATGACGTCATCTCCCTTGTACTCGGCAGCTTCATACTT 517
Query 420 GCTCTCGCCGTCGAACACTACAACATCCATCGCCGGCTCGCCCTTAACATAACGTTGGTG 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 518 GCTCTCGCCGTCGAACACTACAACATCCATCGCCGGCTTGCCCTTAACATAACGTTGGTG 577
Query 480 TTCTGCGTGGAGCCTCTAAACGCGCCGCTGCTTCTGCTTGGCATCTGCGCCACAACGGCG 539
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 578 TTCTGCGTGGAGCCGCTAAACGCGCCGCTACTTCTGCTTGGCATCTGCGCCACAACAGCG 637
Query 540 TTCGTGAGCATGTGGATGCACAACGTAGCAGCTGCGGTCATGATGATGCCAGTGGCTACG 599
||||| |||||||||||||| |||||||||||||| |||||||||||||| || ||||||
Sbjct 638 TTCGTAAGCATGTGGATGCATAACGTAGCAGCTGCAGTCATGATGATGCCTGTCGCTACG 697
Query 600 GGGATACTTCAGAGACTGCCCTCTTCATCATCGTCGACAGAAGTGGTGCATCCGGCCGTG 659
||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct 698 GGGATACTTCAGAGACTGCCCTCGTCATCATCGACGACGGAAGTGGTGCATCCGGCCGTG 757
Query 660 GGGAAGTTTTGCAGAGCGGTGGTGTTAGGTGTGATATACTCTGCGGCGGTTGGTGGGATG 719
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 GGGAAGTTTAGCAGGGCGGTGGTGTTAGGTGTGATATACTCTGCGGCGGTTGGTGGGATG 817
Query 720 AGCACACTCACTGGAACAGGAGTGAATCTGATACTTGTTGGAATGTGGAAAAGCTATTTC 779
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 818 AGCACACTCACTGGAACAGGAGTGAATCTGATTCTTGTTGGAATGTGGAAAAGCTACTTC 877
Query 780 CCTGAGGCTGATCCAATCAGTTTTAGCCAATGGTTCTTCTTTGGCTTCCCGTTGGCTTTG 839
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 878 CCTGAGGCTGATCCGATCAGTTTTAGCCAATGGTTCTTCTTTGGCTTCCCATTGGCTTTG 937
Query 840 TGCATATTTGTGGTGCTTTGGTGTATTCTATGTGTTATGTATTGTCCTAAAGGAGCAGGA 899
|||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 938 TGCATATTCGTGGTGCTTTGGTGTGTTCTTTGTGTTATGTATTGTCCTAAAGGAGCAGGA 997
Query 900 CAAGCTCTTTCTCCTTATCTCCATAAATCTCATCTTAGGAGAGAGCTTGATTTGTTAGGA 959
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 998 CAAGCTCTCTCTCCTTATCTCCATAAATCTCATCTCAGGAGAGAGCTTGATTTGTTAGGG 1057
Query 960 CCAATGAATTTCGCTGAGAAGATGGTCTTAGCCGTGTTTGGTGGGTTGGTTGTGTTGTGG 1019
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 CCAATGAACTTCGCTGAGAAGATGGTCTTAGCCGTGTTTGGTGGGTTGGTTGTGTTGTGG 1117
Query 1020 ATGACAAGAAATATAACAGATGACATCCCCGGCTGGGGTCGGATCTTCGACGGCCGGGCT 1079
|||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||| ||
Sbjct 1118 ATGACAAGGAATATAACTGATGATATCCCCGGCTGGGGTCGGATCTTCGCCGGCCGAGCC 1177
Query 1080 GGGGATGGAACCGTGAGTGTGATGATGGCGACATTGTTGTTTATTATCCCGAGCAAGATT 1139
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1178 GGGGATGGAACCGTGAGTGTGATGATGGCGACATTGTTGTTTATCATCCCAAGCAATATT 1237
Query 1140 AAAAAAGGAGAGAAGCTAATGGATTGGAGCAAATGCAAGAAACTCCCATGGAACATTGTC 1199
||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||
Sbjct 1238 AAAAAAGGAGAGAAGCTAATGGACTGGAACAAATGCAAGAAACTACCATGGAACATTGTC 1297
Query 1200 TTGTTATTGGGAGCTGGATTCGCTATAGCCGATGGAGTACGCACCAGTGGCTTAGCTGAA 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TTGTTATTGGGAGCTGGATTCGCTATAGCCGATGGAGTACGCACCAGTGGCTTAGCTGAG 1357
Query 1260 GTCTTATCCAAAGGACTAGTCTTTCTCGAGACAGCTCCTTACTGGGCCATTGCTCCAACC 1319
||||||||||||||||| ||||| || || || ||||||||||||||||||||||||||
Sbjct 1358 GTCTTATCCAAAGGACTTGTCTTCCTTGAAACGGCTCCTTACTGGGCCATTGCTCCAACG 1417
Query 1320 GTTTGTCTCATCGCCGCTACCATCACAGAGTTCACCTCAAACAACGCAACCACTACATTG 1379
||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1418 GTTTGCCTCATCGCTGCTACCATCACAGAGTTCACTTCAAACAACGCAACCACTACATTG 1477
Query 1380 TTGGTTCCGTTACTGATCGAGATTGCAAAGACCATGGGGATCCATCCTTTGCTCTTGATG 1439
|||||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct 1478 TTGGTTCCGTTACTCATCGAAATCGCAAAGAACATGGGGATCCATCCTTTGCTCTTGATG 1537
Query 1440 GTCCCTGGTGCCATAGGGGCTCAGTTCGCTTTCTTGCTCCCCACGGGAACACCTTCTAAC 1499
|| || || ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1538 GTTCCAGGAGCCATTGGGGCTCAGTTCGCTTTCTTGCTTCCCACGGGAACACCCTCTAAC 1597
Query 1500 GTCGTTGGGTTCACAACAGGGCATATAGAGATCAAAGACATGATCAAAACAGGCTTGCCT 1559
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1598 GTCGTTGGGTTCACGACAGGGCATATAGAGATCAAAGACATGATCAAGACAGGCTTGCCT 1657
Query 1560 CTCAAGATCGCTGGAACCATCTTTCTCTCCATCTTGATGCCCACTCTTGGGGCTTACGTT 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 CTCAAGATCGCTGGAACCATCTTTCTCTCCATCTTGATGCCCACTCTTGGGGCTTACGTT 1717
Query 1620 TTTGCATCAAAGGGAGGAGTTTAGTTCTACGAGCGAAGCACAAGAACATATGGACACTAT 1679
|||||||||| ||||||||||||||||||| ||| |||||||||| ||| | |||| ||
Sbjct 1718 TTTGCATCAATGGGAGGAGTTTAGTTCTACAAGCCAAGCACAAGACCATGT--ACACAAT 1775
Query 1680 TGATTCATTGTACTATAATGT--AG-A---TA-TA--TATGGTCA-ATGA-AT-G--A-T 1724
||||| ||||||||||| ||| | | || || |||| | | || | || | | |
Sbjct 1776 TGATTTATTGTACTATATTGTTTACTACCGTAATACATATG-T-AGAT-ATATAGTCAAT 1832
Query 1725 GGAATGGGAAATTTAGATGTGGTCGCCAAAATTCACAAAATCGGCCCATTTTTGTAACCC 1784
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1833 GGAATGGGAAATTTAGATGAGGTC---AAAATTCACAAAATCGGCCCATTTTTGTAACCC 1889
Query 1785 GCCTGATTATAGTTTCCGGTACGATTGCTTTCTTTAGTGCGTCCAACGTAC-GGATAAGT 1843
||| |||||||||||||||||| |||||||||||| |||| |||||||||| || ||| |
Sbjct 1890 GCCCGATTATAGTTTCCGGTACCATTGCTTTCTTTTGTGCTTCCAACGTACCGG-TAACT 1948
Query 1844 TTGGTCtttttttttttttacttt--t-tctaaatttttA-GGTTAATTAATACAGATTT 1899
|||||| ||||||||||| ||| | | || || | || | | |||||||||||
Sbjct 1949 TTGGTCCCTTTTTTTTTTTG-TTTGGTGTGTATATGAAAAAGGGT--T-AATACAGATTT 2004
Query 1900 GTGTGTTCTTCTTCTTTACTAGT-GCCACTAGTGGCATATCCAGCG-G---TCCAACTTT 1954
|||||||||||||| | || | | || |||||||||| |||||||| | ||||||
Sbjct 2005 GTGTGTTCTTCTTCCTAACAA-TAGCAACTAGTGGCAAATCCAGCGCGCGGTCCAAC--- 2060
Query 1955 ACTGACCATACCATACCACGTCATTGTCCAGCGTGTCTTCTTCTGTTTCCGGTTTTCTAC 2014
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2061 -CTGGCCATACCATACCACGTCATTGTCCAGCGTGTCTTCTTCTGTTTTCGGTTTTCTAC 2119
Query 2015 AAACTCAAAAAGCAAAGAAGaaaaaaaaaaCATTAATGCATGGTTTGTAACG-CTTGCTT 2073
|||| |||||||||||||| || |||| ||| |||||||||||| ||||| |||||||
Sbjct 2120 AAACACAAAAAGCAAAGAA-AACAAAA---CATCAATGCATGGTTTATAACGTCTTGCTT 2175
Query 2074 TTTAATTAGTTTTTGTCCTTTACACTCATTTATGTTATTTCTTTGTCCTTTGCTATATAC 2133
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2176 TTTAATTAGTTTTTGTCCTTTACACTCATTTATGTTCTTTCTTTGTCCTTTGCTATACAC 2235
Query 2134 TGGAGTACTTGTCTATTAAATAAT 2157
| | |||||||||| ||||||
Sbjct 2236 T--A---CTTGTCTATTGAATAAT 2254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106977361395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5