BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494218

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G47550.1 | Symbols:  | Cystatin/monellin superfamily protein...   634    0.0  


> AT5G47550.1 | Symbols:  | Cystatin/monellin superfamily protein 
| chr5:19286450-19286995 REVERSE LENGTH=546
Length=546

 Score =  634 bits (343),  Expect = 0.0
 Identities = 401/429 (93%), Gaps = 4/429 (1%)
 Strand=Plus/Plus

Query  1    AACGGTTACAAAGCAAAATGACTAGCAAGGTCGTCTTTCTTCTTAC-cctctctctcgtc  59
            ||| ||||||||||||||||||||| ||||||||||| |||||| | |||||||||||||
Sbjct  15   AACAGTTACAAAGCAAAATGACTAGTAAGGTCGTCTTCCTTCTT-CTCCTCTCTCTCGTC  73

Query  60   gtcctcctcctccctctctacgcctctGCGGCGGCCCGCGTCGGTGGCTGGAGTCCCATC  119
            ||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct  74   GTCGTCCTCCTCCCTCTCTACGCCTCTGCGGCTGCCCGCGTCGGTGGTTGGAGTCCCATC  133

Query  120  AGCAACGTTACGGACCCTCACGTCGTAGAGATCGGGGAATTCGCGGTCTCCGAGTACAAC  179
            |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct  134  AGCAACGTTACGGACCCTCAAGTCGTAGAGATCGGTGAATTCGCGGTCTCCGAGTACAAC  193

Query  180  AAACGGAGCGAATCGGGACTCAAGTTCGAGACGGTTGTTCGCGGCGAGACTCAGGTCGTC  239
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct  194  AAACGGAGCGAATCGGGACTCAAGTTCGAGACGGTTGTTAGCGGCGAGACTCAGGTCGTA  253

Query  240  GCTGGTACGAATTACCGGCTTACGGTGGCGGCTAATGACGGCGAAGGAGCGAGCAAGAAC  299
             ||||||| |||||||| |||| ||||||||||||||||||||| |||| ||||||||||
Sbjct  254  TCTGGTACAAATTACCGTCTTAAGGTGGCGGCTAATGACGGCGACGGAGTGAGCAAGAAC  313

Query  300  TACTTGGCGATTGTATGGGAAAAGCAGTGGATGAAATTCAGAAATCTCACTTCCTTCGAG  359
            |||||||| || |||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct  314  TACTTGGCAATCGTATGGGACAAGCCGTGGATGAAATTCAGAAATCTCACTTCCTTCGAG  373

Query  360  CCTGCCAATAATGGTCGTTTCCTTTAAGTTTTTTACATGTAACCGCTCTTT-TAAAATAT  418
            ||||||||||||||||| |||||||||| |||| ||||||||||||||||| | || |||
Sbjct  374  CCTGCCAATAATGGTCGCTTCCTTTAAGCTTTTAACATGTAACCGCTCTTTATTAA-TAT  432

Query  419  TGCAGAAAC  427
            |||||||||
Sbjct  433  TGCAGAAAC  441



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21866470815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5