BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494219 Length=1467 Score E Sequences producing significant alignments: (Bits) Value AT5G47530.1 | Symbols: | Auxin-responsive family protein | chr... 2145 0.0 > AT5G47530.1 | Symbols: | Auxin-responsive family protein | chr5:19281374-19283061 FORWARD LENGTH=1476 Length=1476 Score = 2145 bits (1161), Expect = 0.0 Identities = 1363/1458 (93%), Gaps = 24/1458 (2%) Strand=Plus/Plus Query 18 CCCCTTCATACGTAAATCTCATCCTTCATCCATC-TTTAGTCATATAACTCAAGATTCTG 76 ||||||||||| ||||||| ||| |||||||||| |||| |||| | |||| |||||||| Sbjct 35 CCCCTTCATACTTAAATCTTATCATTCATCCATCTTTTAATCAT-T-ACTCGAGATTCTG 92 Query 77 TTACCATGGCCAAATCCTCAAATCTTCTCCTCTGCCTCTCTGTTTTGATCTTCATCATCA 136 || ||||||||| |||||||||||||||||| || |||||| |||| || |||||||||| Sbjct 93 TTTCCATGGCCATATCCTCAAATCTTCTCCTTTGTCTCTCTCTTTTCATTTTCATCATCA 152 Query 137 CCGAATCCGCCTTGGCTCAGAAATGTTCCAACTACAAATTCTCCACCAACCGTCTCTTTG 196 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 153 CCAAATCCGCCTTGGCTCAGAAATGTTCCAACTACAAATTCTCCACCAACCGTCTCTTTG 212 Query 197 AGTCTTGCAACGACCT-CTCTGTTCTTGATTCCTTCCTCCACTACACTTATGATTCTTCT 255 |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| Sbjct 213 AGTCTTGCAACGACCTAC-CTGTTCTTGATTCCTTCCTCCACTACACTTACGATTCTTCT 271 Query 256 TCAGGCAATCTCCAAATCGCGTATCGCCACACAAAACTCACCTCCGGGAAATGGGTGGCA 315 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 272 TCAGGCAATCTCCAAATCGCGTATCGCCACACAAAGCTCACCCCCGGGAAATGGGTGGCA 331 Query 316 TGGGCAGTGAATCCTACATCCACTGGCATGGTCGGAGCTCAAGCCATTGTAGCTTATCCA 375 ||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 332 TGGGCCGTGAATCCCACATCTACTGGCATGGTCGGAGCTCAAGCCATTGTGGCTTATCCA 391 Query 376 CAATCAGACGGCAGCGTTAGGGCTTACACGTCACCCATCAGCAGCTACCAAACGAATCTC 435 ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| |||| Sbjct 392 CAATCAGACGGCACCGTTAGGGCTTATACGTCACCCATCAGTAGCTACCAAACGAGTCTC 451 Query 436 CAAGAAGCTGAGCTGAGTTTCAACGTCTCTGAGTTGTCTGCCACTTACCAAAACAACGAG 495 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 452 CTAGAAGCTGAGCTGAGTTTCAACGTCTCTCAGTTGTCTGCCACTTACCAAAACAACGAG 511 Query 496 ATGGTCATCTACGCAACGT-TGAATCTTCCACTTGCGAATGGTGGAATCATTAACACTGT 554 |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 512 ATGGTCATCTACGCAAT-TCTGAATCTTCCACTTGCGAATGGTGGAATCATTAACACTGT 570 Query 555 ATGGCAAGATGGGTCTCTGTCAGGGAACAATCCTCTGCCTCATCCAACTTCCGGCAACAA 614 |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 571 GTGGCAAGATGGGTCACTGTCAGGGAACAATCCTCTGCCTCATCCAACTTCTGGCAACAA 630 Query 615 TGTTCGCTCTGTTTCTACTCTTAACCTTGTCTCCGGTGCATCTGGTTCCACCTCAACCGG 674 |||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct 631 TGTTCGTTCTGTTTCTACTCTTAACCTTGTCTCTGGTGCATCTGGATCCACCTCTACCGG 690 Query 675 AGGAGGAGGAGGAGCTTCCAAGCTTCGCAAACGCAACATACATGGAATATTGAATGGTGT 734 || |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 691 AGCAGGAGGAG---CTTCCAAGCTACGCAAACGCAACATACATGGAATATTGAACGGTGT 747 Query 735 GAGCTGGGGAATAATGATGCCAATAGGGGCAATCATTGCTCGCTACTTGAAAGTCTCAAA 794 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 748 GAGCTGGGGTATAATGATGCCAATAGGAGCAATCATTGCTCGCTACTTGAAAGTCTCAAA 807 Query 795 ATCAGCAGATCCAGCTTGGTTCTACCTTCATGTTTTCTGCCAGTCTTCTGCTTACATCAT 854 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 808 ATCAGCAGATCCTGCTTGGTTCTACCTTCATGTTTTCTGCCAGTCTTCTGCTTACATCAT 867 Query 855 TGGTGTTGCCGGTTGGGCCACAGGTCTCAAACTGGGCAGCGAATCAGCCGGGATTCAGTT 914 |||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||| Sbjct 868 TGGTGTTGCCGGTTGGGCGACCGGTCTCAAACTGGGCAACGAATCAGCCGGGATTCAGTT 927 Query 915 TACTTTTCACCGTGCTGTTGGGATCGCTCTCTTCTGCCTCGCAACAATTCAGGTGTTTGC 974 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 928 TACCTTTCACCGTGCTGTTGGGATCGCTCTCTTCTGCCTCGCAACAATTCAGGTGTTTGC 987 Query 975 AATGTTTCTGAGACCCAAACCAGAGCACAAATACAGAGTCTACTGGAACATTTATCACCA 1034 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 988 AATGTTTTTGAGACCCAAACCAGAGCACAAGTACAGAGTCTACTGGAACATTTATCACCA 1047 Query 1035 CACCGTAGGCTACACCGTGATCATCCTTGCGGTGGTAAACGTTTTTAAAGGACTAGACAT 1094 ||| |||||||| | |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1048 CACTGTAGGCTATTCAGTGATCATTCTTGCGGTGGTAAACGTTTTTAAAGGACTAGACAT 1107 Query 1095 CTTGAGCCCTGAGAAGCAGTGGAGAAACGCTTACACCGCTATAATCGTAGTACTAGGTAT 1154 | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1108 CCTGAGCCCTGAGAAGCAGTGGAGAAACGCTTACACCGCCATAATCGTAGTACTAGGTAT 1167 Query 1155 AGTCGCGGCTGTGCTAGAAGCGTTTACTTGGTATGTAGTCATAAAGAGAGGGAAAGCAGA 1214 |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1168 AGTCGCGGTTGTGCTCGAAGGGTTTACTTGGTATGTAGTCATAAAGAGAGGGAAAGCAGA 1227 Query 1215 GGAATCTGCGAAAACAGGTCAGCGAGTAGGCAACGATGGTCGGTCTCTATACGTATAGAC 1274 || ||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1228 GGCATCTGCGAAAACAAGTCAACGAGTAGGCAACGATGGTCGGTCTCTATACGTGTAGAC 1287 Query 1275 AGGCTGTGTAAGAGATTAGAGTAAAATTTTCTGGCTTATTTGGTCATTATGGGTTTTCTG 1334 |||| || ||||||||||||||| |||||| |||||||||||||||||| || || Sbjct 1288 T--CTGT--AA-AGATTAGAGTAAAATGTTCTGGTTTATTTGGTCATTATGGGCTTG-TG 1341 Query 1335 -TTGGTTAATTTT-GATTTGATT-CGAGATTAAATTAATACATTTGATGTTGAATAGTTG 1391 ||| |||||||| | |||| || ||||||||| ||||||||||||||||| |||||||| Sbjct 1342 GTTG-TTAATTTTTG-TTTGTTTTCGAGATTAAGTTAATACATTTGATGTTTAATAGTTG 1399 Query 1392 TTGAAGTTGAACA-ACTCTTGTGCTCTTT-ACAACATTCACGATGTGAACTTCTGACAAA 1449 ||||||||||| | ||||||||||||||| |||||||||| ||||||| ||| ||||||| Sbjct 1400 TTGAAGTTGAA-AGACTCTTGTGCTCTTTTACAACATTCATGATGTGAGCTTTTGACAAA 1458 Query 1450 CCATTTTATTTCATCGAC 1467 |||||||||||||||||| Sbjct 1459 CCATTTTATTTCATCGAC 1476 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72338985345 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5