BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494219
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47530.1 | Symbols: | Auxin-responsive family protein | chr... 2145 0.0
> AT5G47530.1 | Symbols: | Auxin-responsive family protein | chr5:19281374-19283061
FORWARD LENGTH=1476
Length=1476
Score = 2145 bits (1161), Expect = 0.0
Identities = 1363/1458 (93%), Gaps = 24/1458 (2%)
Strand=Plus/Plus
Query 18 CCCCTTCATACGTAAATCTCATCCTTCATCCATC-TTTAGTCATATAACTCAAGATTCTG 76
||||||||||| ||||||| ||| |||||||||| |||| |||| | |||| ||||||||
Sbjct 35 CCCCTTCATACTTAAATCTTATCATTCATCCATCTTTTAATCAT-T-ACTCGAGATTCTG 92
Query 77 TTACCATGGCCAAATCCTCAAATCTTCTCCTCTGCCTCTCTGTTTTGATCTTCATCATCA 136
|| ||||||||| |||||||||||||||||| || |||||| |||| || ||||||||||
Sbjct 93 TTTCCATGGCCATATCCTCAAATCTTCTCCTTTGTCTCTCTCTTTTCATTTTCATCATCA 152
Query 137 CCGAATCCGCCTTGGCTCAGAAATGTTCCAACTACAAATTCTCCACCAACCGTCTCTTTG 196
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 CCAAATCCGCCTTGGCTCAGAAATGTTCCAACTACAAATTCTCCACCAACCGTCTCTTTG 212
Query 197 AGTCTTGCAACGACCT-CTCTGTTCTTGATTCCTTCCTCCACTACACTTATGATTCTTCT 255
|||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 213 AGTCTTGCAACGACCTAC-CTGTTCTTGATTCCTTCCTCCACTACACTTACGATTCTTCT 271
Query 256 TCAGGCAATCTCCAAATCGCGTATCGCCACACAAAACTCACCTCCGGGAAATGGGTGGCA 315
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 272 TCAGGCAATCTCCAAATCGCGTATCGCCACACAAAGCTCACCCCCGGGAAATGGGTGGCA 331
Query 316 TGGGCAGTGAATCCTACATCCACTGGCATGGTCGGAGCTCAAGCCATTGTAGCTTATCCA 375
||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 332 TGGGCCGTGAATCCCACATCTACTGGCATGGTCGGAGCTCAAGCCATTGTGGCTTATCCA 391
Query 376 CAATCAGACGGCAGCGTTAGGGCTTACACGTCACCCATCAGCAGCTACCAAACGAATCTC 435
||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| ||||
Sbjct 392 CAATCAGACGGCACCGTTAGGGCTTATACGTCACCCATCAGTAGCTACCAAACGAGTCTC 451
Query 436 CAAGAAGCTGAGCTGAGTTTCAACGTCTCTGAGTTGTCTGCCACTTACCAAAACAACGAG 495
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 452 CTAGAAGCTGAGCTGAGTTTCAACGTCTCTCAGTTGTCTGCCACTTACCAAAACAACGAG 511
Query 496 ATGGTCATCTACGCAACGT-TGAATCTTCCACTTGCGAATGGTGGAATCATTAACACTGT 554
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 512 ATGGTCATCTACGCAAT-TCTGAATCTTCCACTTGCGAATGGTGGAATCATTAACACTGT 570
Query 555 ATGGCAAGATGGGTCTCTGTCAGGGAACAATCCTCTGCCTCATCCAACTTCCGGCAACAA 614
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 571 GTGGCAAGATGGGTCACTGTCAGGGAACAATCCTCTGCCTCATCCAACTTCTGGCAACAA 630
Query 615 TGTTCGCTCTGTTTCTACTCTTAACCTTGTCTCCGGTGCATCTGGTTCCACCTCAACCGG 674
|||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 631 TGTTCGTTCTGTTTCTACTCTTAACCTTGTCTCTGGTGCATCTGGATCCACCTCTACCGG 690
Query 675 AGGAGGAGGAGGAGCTTCCAAGCTTCGCAAACGCAACATACATGGAATATTGAATGGTGT 734
|| |||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 691 AGCAGGAGGAG---CTTCCAAGCTACGCAAACGCAACATACATGGAATATTGAACGGTGT 747
Query 735 GAGCTGGGGAATAATGATGCCAATAGGGGCAATCATTGCTCGCTACTTGAAAGTCTCAAA 794
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 748 GAGCTGGGGTATAATGATGCCAATAGGAGCAATCATTGCTCGCTACTTGAAAGTCTCAAA 807
Query 795 ATCAGCAGATCCAGCTTGGTTCTACCTTCATGTTTTCTGCCAGTCTTCTGCTTACATCAT 854
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 ATCAGCAGATCCTGCTTGGTTCTACCTTCATGTTTTCTGCCAGTCTTCTGCTTACATCAT 867
Query 855 TGGTGTTGCCGGTTGGGCCACAGGTCTCAAACTGGGCAGCGAATCAGCCGGGATTCAGTT 914
|||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 868 TGGTGTTGCCGGTTGGGCGACCGGTCTCAAACTGGGCAACGAATCAGCCGGGATTCAGTT 927
Query 915 TACTTTTCACCGTGCTGTTGGGATCGCTCTCTTCTGCCTCGCAACAATTCAGGTGTTTGC 974
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 TACCTTTCACCGTGCTGTTGGGATCGCTCTCTTCTGCCTCGCAACAATTCAGGTGTTTGC 987
Query 975 AATGTTTCTGAGACCCAAACCAGAGCACAAATACAGAGTCTACTGGAACATTTATCACCA 1034
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 988 AATGTTTTTGAGACCCAAACCAGAGCACAAGTACAGAGTCTACTGGAACATTTATCACCA 1047
Query 1035 CACCGTAGGCTACACCGTGATCATCCTTGCGGTGGTAAACGTTTTTAAAGGACTAGACAT 1094
||| |||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1048 CACTGTAGGCTATTCAGTGATCATTCTTGCGGTGGTAAACGTTTTTAAAGGACTAGACAT 1107
Query 1095 CTTGAGCCCTGAGAAGCAGTGGAGAAACGCTTACACCGCTATAATCGTAGTACTAGGTAT 1154
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1108 CCTGAGCCCTGAGAAGCAGTGGAGAAACGCTTACACCGCCATAATCGTAGTACTAGGTAT 1167
Query 1155 AGTCGCGGCTGTGCTAGAAGCGTTTACTTGGTATGTAGTCATAAAGAGAGGGAAAGCAGA 1214
|||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1168 AGTCGCGGTTGTGCTCGAAGGGTTTACTTGGTATGTAGTCATAAAGAGAGGGAAAGCAGA 1227
Query 1215 GGAATCTGCGAAAACAGGTCAGCGAGTAGGCAACGATGGTCGGTCTCTATACGTATAGAC 1274
|| ||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1228 GGCATCTGCGAAAACAAGTCAACGAGTAGGCAACGATGGTCGGTCTCTATACGTGTAGAC 1287
Query 1275 AGGCTGTGTAAGAGATTAGAGTAAAATTTTCTGGCTTATTTGGTCATTATGGGTTTTCTG 1334
|||| || ||||||||||||||| |||||| |||||||||||||||||| || ||
Sbjct 1288 T--CTGT--AA-AGATTAGAGTAAAATGTTCTGGTTTATTTGGTCATTATGGGCTTG-TG 1341
Query 1335 -TTGGTTAATTTT-GATTTGATT-CGAGATTAAATTAATACATTTGATGTTGAATAGTTG 1391
||| |||||||| | |||| || ||||||||| ||||||||||||||||| ||||||||
Sbjct 1342 GTTG-TTAATTTTTG-TTTGTTTTCGAGATTAAGTTAATACATTTGATGTTTAATAGTTG 1399
Query 1392 TTGAAGTTGAACA-ACTCTTGTGCTCTTT-ACAACATTCACGATGTGAACTTCTGACAAA 1449
||||||||||| | ||||||||||||||| |||||||||| ||||||| ||| |||||||
Sbjct 1400 TTGAAGTTGAA-AGACTCTTGTGCTCTTTTACAACATTCATGATGTGAGCTTTTGACAAA 1458
Query 1450 CCATTTTATTTCATCGAC 1467
||||||||||||||||||
Sbjct 1459 CCATTTTATTTCATCGAC 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72338985345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5