BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494220
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47520.1 | Symbols: AtRABA5a, RABA5a | RAB GTPase homolog A5... 1685 0.0
> AT5G47520.1 | Symbols: AtRABA5a, RABA5a | RAB GTPase homolog
A5A | chr5:19277361-19279736 REVERSE LENGTH=1298
Length=1298
Score = 1685 bits (912), Expect = 0.0
Identities = 1046/1108 (94%), Gaps = 20/1108 (2%)
Strand=Plus/Plus
Query 1 CTGCGTGTCTTTGATTTCCCAGAAGAGAAGCGTTGAATCCTTTCGTTTTCCGATTCCA-T 59
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 20 CTGCGTGTCTTTGATTTCCCAGAAGA-AGGCGTTGAATCCTTTCGTTTTCCGATTCCATT 78
Query 60 TTTGGGATCTCTTGTTTCG-TTTCTTCCCTTTGG----A-TCCATT--C-----CCCCAA 106
||||||||||||||||||| ||||||| |||||| | |||||| | ||||||
Sbjct 79 TTTGGGATCTCTTGTTTCGTTTTCTTCTCTTTGGATCCATTCCATTCCCATGTTCCCCAA 138
Query 107 TTTCTTAAATCGTTGTTGCTTCTACAAGGCTTAATGAGCTTGTATAACAAGTTTCTCTAG 166
|||||| ||||| ||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 139 TTTCTTTAATCGGTGTTGCTTCCACAAGGCTTCATGAGCTTGTATAACAAGTTTCTCTAG 198
Query 167 GAGGTGTTTAAGGGCCAGATCCAGCTTTCAGAAGAGATTTTCTTGGGGTGGTTGAGAGCT 226
|||||||| ||| |||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 199 GAGGTGTTAAAGAGCCAGATCAAGCTTTCAGAAGAGATTTTCTTAGGGTGGTTGAGAGCT 258
Query 227 GAAAGTTTTGAAATTTAGTCAACTTTGCTCCACAGAACCTTCTAGGAAGCTACCTCAAGT 286
||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 259 GAAAGTTTTGATATTTAGTCAACTTTGTTCCACTGAACCTTCTAGGAAGCTACCTCAAGT 318
Query 287 AGACAGCTTTGTTGACAGGCTACAAGCCAGTGGTAAAGATATGTTTCTGTAGAAGGGGTG 346
|||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| |
Sbjct 319 AGACAGCTTTGTTGACGGGCTTCAAGCCAGTGGTAAAGATATGCTTCTGTAGAAGGGTTA 378
Query 347 ATCTCGAGCATATAAAGGAGATGGCTTTCTACTCTGAAGACGACAAGAGCGAAGACTACC 406
|||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 379 ATCTTGAGCAT-TAAAGGACATGGCTTTCTACTCTGAAGACGACAAGAGCGAAGACTACC 437
Query 407 TCTTTAAGATTGTTCTAATCGGTGATTCTGCTGTGGGGAAATCAAATTTGCTTGCCAGAT 466
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 438 TCTTTAAGATTGTTCTAATCGGTGATTCTGCTGTCGGGAAATCAAATTTACTTGCCAGAT 497
Query 467 TTGCGAGGGATGAGTTCTATCCCAATTCAAAGTCGACGATTGGAGTGGAGTTTCAGACAC 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TTGCGAGGGATGAGTTCTATCCCAATTCAAAGTCGACGATTGGAGTGGAGTTTCAGACAC 557
Query 527 AGAAGATGGATATTAATGGAAAGGAGATCAAAGCACAGATATGGGACACAGCGGGTCAAG 586
||||||||||||| || || |||||||||||||||||||||||||||||||| |||||||
Sbjct 558 AGAAGATGGATATAAACGGGAAGGAGATCAAAGCACAGATATGGGACACAGCAGGTCAAG 617
Query 587 AACGTTTCAGAGCAGTCACTTCTGCGTATTACCGAGGTGCAGTAGGAGCTCTTCTGGTTT 646
||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 618 AACGTTTTAGAGCAGTCACTTCTGCATATTACCGAGGTGCAGTTGGAGCTCTTCTGGTTT 677
Query 647 ACGACATCAGCAGACGGCAGACTTTTCACAGCATTGGTAGATGGCTCAACGAGCTACACA 706
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 ACGATATCAGCAGACGGCAGACTTTTCACAGCATTGGTAGATGGCTCAACGAGCTACACA 737
Query 707 CACACTCTGATATGAATGTTGTGACGATCCTGGTGGGCAACAAGTCGGATCTGAAGGACT 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 CACACTCTGATATGAATGTTGTGACGATCCTGGTGGGCAACAAGTCGGATCTGAAGGACT 797
Query 767 TGAGAGAAGTGTCAACAGCGGAAGGGAAGGCATTGGCTGAAGCACAAGGTCTTTTCTTCA 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 TGAGAGAAGTGTCAACAGCGGAAGGGAAGGCATTGGCTGAAGCACAAGGTCTTTTCTTCA 857
Query 827 TGGAGACATCGGCTCTGGACTCATCAAACGTGGCAGCTGCGTTTGAGACGGTTGTGAAGG 886
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 858 TGGAGACATCGGCTTTGGACTCATCAAACGTGGCAGCTGCATTTGAGACGGTTGTGAAGG 917
Query 887 AGATATACAACATACTGAGCAGGAAAGTGATGAGCTCACAGGAGCTAAACAAGCAAGATC 946
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 918 AGATATACAACATACTGAGCAGGAAAGTGATGAGCTCACAGGAGCTAAACAAGCAAGACC 977
Query 947 CTGCTTCACTCAGCAATGGCAAGAAAGTTGTGATTCCATCAGATGGGCAGGGCGAGTCCA 1006
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| ||
Sbjct 978 CTGCTTCACTGAGCAATGGCAAGAAAGTTGTGATACCATCAGACGGGCAGGGCGAGTTCA 1037
Query 1007 AGAAAGGTGGATGCTGTTCTTCTTGATAGAAA-CTAAAATTGTAGAGAGCTTTAAAAGGA 1065
||||||||||||| |||||||||||||||||| || |||||||||||||||| |||||||
Sbjct 1038 AGAAAGGTGGATGTTGTTCTTCTTGATAGAAAACTGAAATTGTAGAGAGCTTAAAAAGGA 1097
Query 1066 AGGTTATTATTGATCATCTGTTCGATTG 1093
|| | ||||||||||||||| |||||
Sbjct 1098 AG---ACTATTGATCATCTGTTTGATTG 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53563981515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5