BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494221
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47510.1 | Symbols: | Sec14p-like phosphatidylinositol tran... 1513 0.0
> AT5G47510.1 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr5:19275048-19277056 FORWARD LENGTH=1188
Length=1188
Score = 1513 bits (819), Expect = 0.0
Identities = 993/1075 (92%), Gaps = 19/1075 (2%)
Strand=Plus/Plus
Query 40 AATAATGAAGATATGGTTGAAGCGTTTCGTAACTTGCTTCTCCTCCATGGCCACTTACCT 99
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 AATAATGAAGAGATGGTTGAAGCGTTTCGTAACTTGCTTCTCCTCCATGGCCACTTACCT 126
Query 100 TCCAAGCACGGAGATCATAATACACTTCGCAGGTTTCTAAAAATGAGAGATTTTGATCTG 159
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 127 GATAAGCACGGGGATCATAATACACTTCGCAGGTTTCTTAAAATGAGAGATTTTGATCTG 186
Query 160 GAGAAATCCAAAGATGCGTTTCTCAATTATATCAAGTGGCGAGTGGATTCTAAAGTGGAT 219
|||||||| ||||| || |||||||||||||| |||||||||||||| | ||||||||||
Sbjct 187 GAGAAATCTAAAGAGGCTTTTCTCAATTATATGAAGTGGCGAGTGGACTATAAAGTGGAT 246
Query 220 TTCATCTCTCAGACGTTTAAGTTTGAGGAATATGGTGAAGTGAAGAAGCATTACCCTCAT 279
|| |||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 247 TTGATCTCTCAGAAGTTTAAGTTTGAGGAATATGGTGAAGTCAAGAAACATTACCCTCAT 306
Query 280 GGGTTTCATAAGGTTGACAAAACTGGTAGGCCAATTTACATTGAGAGACTCGGGATGGCT 339
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 307 GGGTTTCATAAGGTAGACAAAACTGGTAGGCCTATTTACATTGAGAGACTCGGGATGACT 366
Query 340 GACCTGACCGCGTTTCTTAAAGCAACCACCATTGACAGATATGTTAAGTATCATATTAAA 399
||||| | ||||||||| ||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 367 GACCTTAACGCGTTTCTCAAAGCAACCACCATTGAGAGATATGTTAACTATCATATCAAA 426
Query 400 GAACAAGAGAAAACGCTGACCTTCAGATATCCAGCTTGTTCTATTGCTGCAGACAAGCAT 459
|||||||||||||| ||| ||| ||||||||||| ||||| |||||| |||| ||||||
Sbjct 427 GAACAAGAGAAAACAATGAGCTTGAGATATCCAGCATGTTCAATTGCTTCAGATAAGCAT 486
Query 460 GTTTCGTCTACCACTACCATTTTGGATGTCTCTGGAATGGGAATGTCAAACTTCTCAAAA 519
|||||||| || || ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 487 GTTTCGTCAACAACAACCATATTGGATGTCTCTGGAGTGGGAATGTCAAACTTCTCAAAA 546
Query 520 CCTGCGAGATCTCTCTTCATGGAAATTCAGAAGATAGACAGCAACTACTACCCTGAGACT 579
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 547 CCTGCGAGATCCCTCTTTATGGAAATTCAAAAGATAGACAGCAACTACTACCCTGAGACT 606
Query 580 TTGCATCGCCTCTTCGTTGTCAATGCAAGTTCTGGATTCCGGATGCTGTGGCTTGCACTC 639
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 607 TTGCATCGCCTCTTCGTTGTCAATGCCAGTTCTGGATTCCGGATGTTGTGGCTTGCACTC 666
Query 640 AAGACCTTTCTTGATGCTCGGACATTGGCCAAAGTTCAAGTGCTAGGACCCAATTACCTT 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGACCTTTCTTGATGCTCGGACATTGGCCAAAGTTCAAGTGCTAGGACCCAATTACCTT 726
Query 700 GGAGAACTACTTGAAGCAATAGATCCAAGCAACTTACCAACATTTCTTGGAGGAAACTGC 759
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 727 GGAGAGCTACTTGAAGCAATAGAACCAAGCAACTTACCAACATTTCTTGGAGGAAATTGC 786
Query 760 ACCTGTTCAGATCATGGAGGCTGTCTTTTTAGCGATGAAGGACCTTGGAATGATCCAGAC 819
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
Sbjct 787 ACCTGTTCAGATCATGGAGGCTGTCTTTTCAGTGATGAAGGACCTTGGAATGATCCAGGC 846
Query 820 ATCAAGAAAAAGATCCAGGAGCCTTCCACAATCGGAGATGCTGATTCAGAGAGTATGGAT 879
|||||| |||||||| |||||||||||||||||| ||||||| ||||||||| |||||||
Sbjct 847 ATCAAGGAAAAGATCGAGGAGCCTTCCACAATCGAAGATGCTCATTCAGAGACTATGGAT 906
Query 880 AAAGTCTCAGAAAATGCCCCAGCCAATCAAAAAGAAAGTACAGGCAAGATCATGATTACA 939
||||||||||||||||| |||||||||||||| |||||| |||| || |||||||||||
Sbjct 907 AAAGTCTCAGAAAATGCTCCAGCCAATCAAAAGGAAAGTTTAGGCGAGGTCATGATTACA 966
Query 940 TTGGAGAAGTATGCTGCCCTGAAAACTGCTGTCAAGGATTCCCAGAAG-GTGAAATTGAT 998
||||||||||||||||||||||||||||||||||||||||||||||| | || | |
Sbjct 967 ATGGAGAAGTATGCTGCCCTGAAAACTGCTGTCAAGGATTCCCAGAAGAG-GA--T--A- 1020
Query 999 TGAAATGTTGGAGATATCACTCCATGAGACAAAAAAGGTCTTGAATGGACTCGCGGAGAT 1058
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1021 -GAAATGTTGGAAATATCACTCCATGAGACTAAAAAGGTCTTGAATGGACTCGCGGAGAT 1079
Query 1059 CATTGA----A--C--C-GAATCAACCTATAGAC-AAATGCAAACCGGTTTAGAA 1103
|||||| | | | ||||||||||||| || ||||||||||||||||||||
Sbjct 1080 CATTGAGGCCATTCAACCGAATCAACCTATA-ACCAAATGCAAACCGGTTTAGAA 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54065986965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5