BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494222
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47500.1 | Symbols: | Pectin lyase-like superfamily protein... 1923 0.0
> AT5G47500.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:19270959-19272883 REVERSE LENGTH=1430
Length=1430
Score = 1923 bits (1041), Expect = 0.0
Identities = 1126/1168 (96%), Gaps = 2/1168 (0%)
Strand=Plus/Plus
Query 1 ATTTACTTACTCCGACCGTTTCCTTTCTCACAATCCAATGGCGCAACTTACTAATTCCCT 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2 ATTTACTTACTCCGACCGTTTCCTTTCTCACAAGCCAATGGCGCAACTTACTAATTCCCT 61
Query 61 CAATTATCTCTTTTATGTTTCCCTCTTATTATTTGTATCATTCCACTGCTTATGTTTTCG 120
|||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 62 CAATTATCTCTTTTCTGTTTCTCTCTTATTATTTGTATCGTTCCACTGCTTATGTTTTCG 121
Query 121 TTTTTCTTTGGTTGCAGCTTGTTCAAACTCCACCGACGATCAACAGATTCAACACCATCA 180
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 122 TTTTTCGTTGGTTGCAGCTTGTTCAAACTCCACTGACGATCAACAGATTCAACACCATCA 181
Query 181 CCACCGGAAATGGGTTGGTCCCTCAGGCCACAAAGTCATCACCGTCTCACTTAACGGCCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CCACCGGAAATGGGTTGGTCCCTCAGGCCACAAAGTCATCACCGTCTCACTTAACGGCCA 241
Query 241 CGCTC-GCTTTCGCTCCGTCCAAGACGCTGTCGACTCCATACCAAAGAACAATAACATGA 299
||||| | ||||||||||||||||||||||| || |||||||||||||||||||||| ||
Sbjct 242 CGCTCAG-TTTCGCTCCGTCCAAGACGCTGTGGATTCCATACCAAAGAACAATAACAAGA 300
Query 300 GCATCACTATCAAGATTGCTCCCGGATTTTACAGAGAGAAAGTGGTAGTTCCAGCTACAA 359
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 GCATCACAATCAAGATTGCTCCCGGATTTTACAGAGAGAAAGTGGTGGTTCCAGCTACAA 360
Query 360 AACCGTACATAACGTTCAAAGGAGCGGGTCGGGATGTGACGGCTATAGAGTGGCACGACC 419
||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||
Sbjct 361 AACCGTACATAACGTTCAAAGGAGCTGGTAGGGATGTGACCGCTATAGAGTGGCACGACC 420
Query 420 GTGCGTCCGACCTTGGTGCTAACGGTCAACAGTTACGTACTTATCAAACCGCTTCCGTCA 479
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 GTGCGTCCGACCTTGGCGCTAACGGTCAACAGTTACGTACCTATCAAACCGCTTCCGTCA 480
Query 480 CTGTCTACGCTAACTATTTCACCGCTAGAAACATTAGCTTCACGAATACTGCGCCGGCTC 539
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCGTCTACGCTAATTATTTCACCGCTAGAAACATTAGCTTCACGAATACTGCGCCGGCTC 540
Query 540 CATTGCCGGGGATGCAAGGGTGGCAAGCGGTGGCGTTTAGGATCTCCGGCGACAAAGCTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CATTGCCGGGGATGCAAGGGTGGCAAGCGGTGGCGTTTAGGATCTCCGGCGACAAAGCTT 600
Query 600 TCTTTTCCGGCTGCGGGTTTTATGGTGCACAAGACACTTTATGTGACGATGCTGGCCGTC 659
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 601 TCTTTTCCGGCTGCGGGTTTTACGGTGCACAAGACACTTTATGCGACGATGCTGGCCGTC 660
Query 660 ATTACTTCAAGGAGTGTTACATTGAAGGCTCTATCGACTTTATCTTTGGTAACGGCCGCT 719
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 661 ATTACTTCAAGGAGTGTTACATTGAAGGCTCTATCGACTTTATCTTTGGTAATGGCCGCT 720
Query 720 CCATGTATAAAGATTGTGAATTGCATTCGATAGCGTCTAGATTCGGGTCGATAGCGGCGC 779
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 721 CCATGTATAAAGATTGTGAGTTGCATTCGATAGCGTCAAGATTCGGGTCGATAGCGGCGC 780
Query 780 ACGGGAGGACATGCCCGGAGGAGAAAACGGGGTTCGCGTTCGTTGGTTGTCGGGTTACAG 839
| || |||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 781 ATGGTAGGACATGCCCGGAAGAGAAAACGGGTTTCGCGTTCGTGGGTTGTCGGGTAACAG 840
Query 840 GTACGGGTCCGTTGTACGTGGGACGGGCCATGGGACAATACTCACGTATCGTTTACGCCT 899
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 841 GTACGGGTCCATTGTATGTGGGCCGGGCCATGGGACAATACTCACGTATCGTTTACGCCT 900
Query 900 ACACCTACTTTGATGCTCTCGTCGCTCACGGTGGCTGGGACGATTGGGATCACAAATCCA 959
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 901 ACACTTACTTTGATGCTCTCGTCGCTCACGGTGGTTGGGACGATTGGGACCACAAATCCA 960
Query 960 ACAAAAGCAAGACGGCGTTTTTCGGAGTGTACAATTGCTATGGGCCAGGAGCAGCAGCGA 1019
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ACAAAAGCAAGACGGCATTTTTCGGAGTGTACAATTGCTATGGGCCAGGAGCAGCAGCGA 1020
Query 1020 CGAGAGGCGTGTCATGGGCTAGAGCGTTGGACTATGAATCGGCCCATCCGTTTATAGCTA 1079
||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1021 CGAGAGGCGTGTCTTGGGCTAGAGCTTTGGACTATGAATCGGCCCATCCATTTATCGCTA 1080
Query 1080 AGAGCTTCGTTAATGGGAGACATTGGATCGCTCCTCGAGATGCTTAACCAACTTCAAACC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AGAGCTTCGTTAATGGGAGACATTGGATCGCTCCTCGAGATGCTTAACCAACTTCAAACC 1140
Query 1140 TTGGCGGGGtttcttttcctaattcctc 1167
||||||||||||||||||||||||||||
Sbjct 1141 TTGGCGGGGTTTCTTTTCCTAATTCCTC 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65461510680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5