BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494231

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G47455.4 | Symbols:  | unknown protein; BEST Arabidopsis tha...   560    4e-159


> AT5G47455.4 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G17310.2); 
Has 125 Blast hits to 125 proteins in 13 species: Archae - 
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:19250723-19252364 
FORWARD LENGTH=536
Length=536

 Score =  560 bits (303),  Expect = 4e-159
 Identities = 415/464 (89%), Gaps = 28/464 (6%)
 Strand=Plus/Plus

Query  1    TTTTCTATCTCTTACAATGGCGTCTAGATTCATGAGCAGATCCTCCGTCTCTTCTCTCAA  60
            ||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||
Sbjct  67   TTTTCTAGCTCTTACAATGGCTTCTAGATTCATGAGCAGATCCTCTGTCTCGTCTTTCAA  126

Query  61   ATCCGCAATCAGATCTTCACTTCGAAATTCTCCCATTGGCACCGGATCTTCTCCGGCTGC  120
            |||||| || ||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct  127  ATCCGCCATTAGATCTTCATTTCGAAATTCTCCCATTGGCACTGGATCTTCTCCGGCTGC  186

Query  121  TGCTTCATCCGCCGGATTTCGTATTCCGTCTAAACCAGCTGCTTCTCCACTTCCCCGATT  180
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  187  TGCTTCATCCGCCGGATTTCGTATTCCGTCTAAACCAGCTGCTTCTCCTCTTCCCCGATT  246

Query  181  CTCCTTCTCCAGGTGTCCATCTGAGCTTGGTTGTGTTCAGTCGCTGTTACCGCTTCACAG  240
            |||||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct  247  CTCCTTCTCCAGGTGTCCGTCGGAGCTTGGTTGTGTTCAGTCTCTGTTACCGCTACACAG  306

Query  241  CACGGTGGCGGCTGCGCGGTTGACGTCATGCCTAAGCACAACTTCCAGAAGCAGCCGAGC  300
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  307  CACGGTGGCGGCTGCGCGGTTGACGTCATGCTTAAGCACAACTTCCAGAAGCAGCCGAGC  366

Query  301  TCTCTCTCAGGAGATGGGCCTTTCAGTTCCAAGGTGACAAG-T---T----GA-G-G---  347
            |||| |||||||  |||| |||||||| ||||||||||||| |   |    || | |   
Sbjct  367  TCTCACTCAGGA--TGGGACTTTCAGTCCCAAGGTGACAAGATACATTCATGAAGAGTAT  424

Query  348  -------GA----TGCAAGTTTCTTCTATAAACTTAGAGACAAGAAGTTGTTGTTTT-TG  395
                   ||    |||||||||||||| |||||||||||||||||| ||||| |||| ||
Sbjct  425  TACTATTGAGGGATGCAAGTTTCTTCTCTAAACTTAGAGACAAGAATTTGTT-TTTTGTG  483

Query  396  TTATGACTCCAAACTCATGTTCTTTGATTCATGAAGGGAAAAAA  439
            ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  484  TTATGACTCCAAACTTATGTTCTTTGATTCATGAAGGGAAAAAA  527



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20861115835


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5