BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494233
Length=1028
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47450.1 | Symbols: ATTIP2;3, TIP2;3, DELTA-TIP3 | tonoplast... 1491 0.0
> AT5G47450.1 | Symbols: ATTIP2;3, TIP2;3, DELTA-TIP3 | tonoplast
intrinsic protein 2;3 | chr5:19248249-19249504 REVERSE LENGTH=1051
Length=1051
Score = 1491 bits (807), Expect = 0.0
Identities = 965/1039 (93%), Gaps = 19/1039 (2%)
Strand=Plus/Plus
Query 1 ACAGAAAATAGAAAG-AGATAACAAAACCAAAACAAGAAATGGTGAAGATCGAACTTGGA 59
||||||||||||||| || ||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 1 ACAGAAAATAGAAAGAAG-TAACAAAACCAAAGCAAAAAATGGTGAAGATCGAAGTTGGA 59
Query 60 AGTGTGGGTGACTCATTCAGTGTATCATCTCTAAAAGCTTACTTGTCTGAGTTTATCGCA 119
|||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 60 AGTGTGGGAGACTCATTCAGTGTATCATCTCTTAAAGCTTACTTGTCTGAGTTCATCGCA 119
Query 120 ACGCTTCTCTTCGTATTCGCCGGTGTTGGCTCTGCTATCGCGTTTGACAAACTAACCTCT 179
|| ||||||||||||||||| || |||||||||||| | ||||||| |||||||||||||
Sbjct 120 ACTCTTCTCTTCGTATTCGCAGGCGTTGGCTCTGCTGTTGCGTTTGCCAAACTAACCTCT 179
Query 180 GATGGAGCCTTGGACCCGGCTGGTCTTGTAGCGATTGCGATTGCTCATGCGTTTGCTCTT 239
||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 180 GATGGAGCCTTGGACCCAGCTGGTCTTGTAGCAATTGCAATTGCTCACGCGTTTGCTCTT 239
Query 240 TTCGTTGGAGTTTCCATTGCGGCTAATATATCCGGTGGTCACCTTAACCCAGCTGTGACT 299
|||||||||||||||||||||||||| || || |||||||||||||||||||| ||||||
Sbjct 240 TTCGTTGGAGTTTCCATTGCGGCTAACATTTCTGGTGGTCACCTTAACCCAGCCGTGACT 299
Query 300 CTTGGCCTTGCCATCGGCGGAAACATAACACTCATCATAGGTTTCTTCTATTGGATTGCT 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 CTTGGCCTTGCCATCGGCGGAAACATAACACTCATCACAGGTTTCTTCTATTGGATTGCT 359
Query 360 CAGTGTCTTGGCTCCATCGTCGCTTGTCTTCTCCTCGTCTTTGTTACCAATGGAAAGAGC 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 360 CAGTGTCTTGGCTCCATCGTCGCTTGTCTTCTCCTCGTCTTTGTTACTAATGGCAAGAGC 419
Query 420 GTACCGACCCACGGAGTCGCAGCCGGTTTAGGAGCGGTTGAAGGTATCGTGATGGAGATC 479
|||||||||||||| ||| |||||||| |||||||||| |||||| |||| |||||||||
Sbjct 420 GTACCGACCCACGGGGTCTCAGCCGGTCTAGGAGCGGTCGAAGGTGTCGTCATGGAGATC 479
Query 480 GTTGTGACCTTTGCATTGGTCTACACCGTTTACGCCACCGCAGCTGATCCAAAGAAAGGA 539
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 480 GTTGTGACCTTTGCATTGGTCTACACCGTTTACGCCACAGCAGCTGATCCAAAGAAAGGA 539
Query 540 TCGCTTGGGACCATCGCTCCAATCGCTATCGGCTTCATAGTTGGTGCCAACATCCTCGCT 599
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 540 TCGCTAGGGACCATCGCTCCAATCGCCATCGGCTTCATAGTTGGTGCCAACATCCTCGCT 599
Query 600 GCTGGTCCATTCAGTGGTGGCTCCATGAACCCAGCAAGGTCTTTCGGACCAGCTGTTGTG 659
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 600 GCTGGTCCATTCAGTGGTGGCTCCATGAATCCAGCAAGGTCGTTCGGACCAGCTGTTGTC 659
Query 660 AGTGGTGACTTGTCCCAAATCTGGATCTATTGGGTGGGACCACTTGTGGGTGGTGCACTC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGTGGTGACTTGTCCCAAATCTGGATCTATTGGGTGGGACCACTTGTGGGTGGTGCACTC 719
Query 720 GCCGGACTTATCTACGGTGACGTGTTCATCGGTTCTTATGAAGCGGTAGAAACCCGTGAG 779
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 720 GCGGGACTTATCTACGGTGATGTGTTCATCGGTTCTTATGAAGCGGTAGAAACCCGTGAG 779
Query 780 ATCCGAGTGTAATTAACCGGGTTTTGTGAATGCTTGGTGTTTGCTTGTTGGTTGGTTTGC 839
|||||||||||||| || ||||||||||| |||||| || ||| ||| || || ||||||
Sbjct 780 ATCCGAGTGTAATTGACTGGGTTTTGTGATTGCTTGATGGTTGGTTGATGTTTTGTTTGC 839
Query 840 GTGTGTATCCATGTTTCGTGTCCACTTTCTTGCAAGATTGTATGTAGAGAAAACaaaaaa 899
|||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 840 GTGTGTAT----GTTTGGTGTCCACTTTCTTGCAAGATTGTATGTAGAGAAAAGAAAAAA 895
Query 900 aGTTATGTCGTGTTAATAAGAAAATGTATATA--TTTCACTTCATGTC-TTTTACTTTTA 956
||||||||| |||||||||||||||||||||| ||||||||||| || |||| |||||
Sbjct 896 AGTTATGTCCTGTTAATAAGAAAATGTATATACATTTCACTTCATCTCCTTTT--TTTTA 953
Query 957 ACGTATAGCATG---GGATTTCTTTCATAT-TCTAT-T-T-CTATCGCATTTTACTTTCA 1009
|||||||||||| || |||||||||||| | | | | | |||| ||||||||||||||
Sbjct 954 ACGTATAGCATGTTTGG-TTTCTTTCATATGTTTTTGTATTCTATGGCATTTTACTTTCA 1012
Query 1010 TAAAGTTATCAATATAATT 1028
|||||||||| | ||||||
Sbjct 1013 TAAAGTTATCGACATAATT 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50384849441
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5