BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494236
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47435.2 | Symbols: | formyltetrahydrofolate deformylase, p... 2342 0.0
AT4G17360.1 | Symbols: | Formyl transferase | chr4:9703547-970... 974 0.0
AT5G47440.1 | Symbols: | Plant protein of unknown function (DU... 409 5e-113
AT4G17350.1 | Symbols: | Plant protein of unknown function (DU... 261 1e-68
> AT5G47435.2 | Symbols: | formyltetrahydrofolate deformylase,
putative | chr5:19241703-19243988 FORWARD LENGTH=1532
Length=1532
Score = 2342 bits (1268), Expect = 0.0
Identities = 1418/1491 (95%), Gaps = 7/1491 (0%)
Strand=Plus/Plus
Query 10 CGGTGCGG-TGAGGCTCAGGCGGAGATTGAGAGAGAGACCAACCATGATACGACGAATCT 68
||||| || ||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 35 CGGTGAGGCTGAGGCTGAGGCGGAGATT--GAGAGAGACCAACCATGATACGACGAATCA 92
Query 69 CCGAGAGAGCTTCTAGTTTCGCTAAGAATTTTCCAATTCTCAAAGCGTCTCGATTTCACG 128
|||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct 93 CCGAGAGAGCTTCTGGTTTCGCTAAGAATATTCCGATTCTCAAATCGTCTCGATTTCACG 152
Query 129 GCGAGTCCCTCGATTCCTCCGTCTCCCCTGTTCTCATCCCCGGCGTCCATGTCTTCCATT 188
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 153 GCGAGTCCCTCGATTCCTCCGTCTCCCCTGTTCTCATTCCCGGCGTCCATGTCTTCCATT 212
Query 189 GTCAGGATGCTGTTGGAATTGTAGCAAAACTATCAGATTGTATTGCTGCAAAAGGTGGCA 248
|||||||||||||||| |||||||| |||||||||||||| || || |||||||||||||
Sbjct 213 GTCAGGATGCTGTTGGGATTGTAGCTAAACTATCAGATTGCATAGCAGCAAAAGGTGGCA 272
Query 249 ACATTCTTGGCTACGATGTTTTTGTTCCTGAAAACAACAACGTCTTCTACTCTCGCAGTG 308
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 273 ACATTCTTGGCTACGATGTTTTTGTTCCTGAAAACAACAACGTCTTCTACTCTCGCAGCG 332
Query 309 AGTTTATATTTGATCCGGTTAAATGGCCGAGAAACCAAGTGGATGAAGATTTTCAAACTA 368
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 333 AGTTTATCTTTGATCCGGTTAAATGGCCGAGAAGCCAAGTGGATGAAGATTTTCAAACTA 392
Query 369 TTGCACAAAGATACGGTGCCTTGAATTCGGTTGTGCGTGTGCCTTCTATAGACCCCAAGT 428
|||||||||||||||||||||||||||| |||||||||||||||||||| || || ||||
Sbjct 393 TTGCACAAAGATACGGTGCCTTGAATTCAGTTGTGCGTGTGCCTTCTATTGATCCTAAGT 452
Query 429 ATAAGATAGCTCTTCTACTTTCAAAACAGGATCATTGTCTTGTCGAAATGTTGCATAAAT 488
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 ATAAGATAGCTCTTCTTCTTTCAAAACAGGATCATTGTCTTGTCGAAATGTTGCATAAAT 512
Query 489 GGCAGGACGGGAAACTCCCAGTCGATATCACCTGTGTGATAAGCAATCATGAAAGAGCAT 548
||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |
Sbjct 513 GGCAGGACGGGAAACTCCCTGTGGATATTACCTGTGTGATAAGCAATCATGAAAGAGCTT 572
Query 549 CTAACACTCACGTTATGCGGTTTCTTGAGAGGCATGGCATCCCGTATCATTATGTATCGA 608
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 573 CAAACACTCACGTTATGCGGTTTCTTGAGAGGCATGGCATCCCTTATCATTATGTATCTA 632
Query 609 CAACTAAAGAGAATAAAAGAGAAGATGACATTTTGGAATTGGTTAAAGACACTGATTTCC 668
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 633 CAACTAAAGAGAATAAAAGAGAAGATGATATTTTGGAATTGGTTAAGGACACTGATTTCC 692
Query 669 TAGTTCTTGCTAGATACATGCAGATTTTATCGGGTAACTTTTTGAAAGGTTATGGAAAGG 728
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TAGTTCTTGCTAGATATATGCAGATTTTATCGGGTAACTTTTTGAAAGGTTATGGAAAGG 752
Query 729 ATGTAATCAACATCCACCATGGTCTCTTACCATCATTTAAGGGTGGATATCCCGCAAAAC 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 ATGTAATCAACATCCACCATGGTCTCTTACCATCATTTAAGGGTGGATATCCCGCAAAAC 812
Query 789 AGGCATTTGATGCTGGTGTGAAACTAATTGGAGCAACTAGTCACTTTGTTACCGAGGAAC 848
||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 813 AGGCATTCGACGCTGGTGTGAAACTAATTGGAGCCACTAGTCACTTTGTTACCGAGGAAC 872
Query 849 TTGATTCAGGGCCTATTATTGAACAAATGGTTGAGAGTGTTTCTCACCGAGACAACCTAA 908
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 873 TTGATTCAGGGCCAATTATTGAACAAATGGTTGAGAGTGTTTCCCACCGAGACAACTTAA 932
Query 909 GGAGCTTTGTCCAGAAATCCGAGGACCTAGAGAAAAAATGCCTCACGAAAGCTATAAAAT 968
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 933 GGAGCTTTGTCCAGAAATCCGAGGACCTAGAGAAAAAATGCCTCACGAGAGCTATAAAAT 992
Query 969 CTTACTGCGAACTACGGGTATTACCTTATGGCACAAACAAGACTGTTGTATTCTAGTTAA 1028
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 993 CTTACTGCGAACTAAGGGTATTACCTTATGGTACAAACAAGACTGTTGTATTCTAGTTAA 1052
Query 1029 GAAAGCAATGACTAAGATTCTCATCTGATTTTTTGTATGAAC-TACTCAAGAGAAGGATT 1087
||||||||| |||| ||||||||||||||| ||||| ||||| | ||||||| |||||||
Sbjct 1053 GAAAGCAATAACTACGATTCTCATCTGATTCTTTGTTTGAACAT-CTCAAGAAAAGGATT 1111
Query 1088 CTCTATCGCATGCGATCGCTGAAACTCAGAGATTCCAGAGAGCATTTGGCAGCCTCAAGG 1147
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1112 CTCTATCGCATGCGATTGCTGAGACTCAGAGATTCCAGAGAGCATTTGGCAGCCTCGAGG 1171
Query 1148 CAACTTACTAAGCGGAGATTAGACTGAATCCCAGCAACCCATCTCTGCTTCTGAATCTTA 1207
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 CAACTTACTAAGCGGAGATTAGACTGAATCCCAGCAACCCATCTCTGCTTCTGAATCTTG 1231
Query 1208 CTCTTGCACTTGAACTCTAAAAGGCCGTGTCCTGTTTTCAGACCAAAATAGACTTCTTCG 1267
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1232 CTCTTGCACTTGAACTCTAAAAGACCCTGTCCTGTTTTCAGACCAAAATAGACTTCTTCG 1291
Query 1268 GAATTTTCCCTCTCTTTCCTGTAAGGCCATGCACATATCTCGTCGCAGACTGCATAAACA 1327
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 1292 GAATTTTCCCTCTCTTTCCTGCAAGGCCATGCAGATATCTCGTCGCAGACTCCATAAACA 1351
Query 1328 ACGCCTTCAAAAGTATCAACAAGCTTCAGACTTCCGTGTTTCAAGTAATTTCCCTAACTC 1387
|| |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 ACACCTTTGAAAGCAACAACAAGCTTCAGACTTCCGTGTTTCAAGTAATTTCCCTAACTC 1411
Query 1388 TTGaaa-aagaaaaaa-TGCTTACATTTGATCTTCTTGGAGAAAGCCCCTCCAACGTGTT 1445
|||||| || |||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1412 TTGAAAGAATAAAAAAATGCTTACATTTGATCTTCTTGGAGAATGCCCCTCCAACATGTT 1471
Query 1446 TGCTTTTGAGTTTTATCATGACCTGGGACATTCATATAGGTTAAGTAACTA 1496
||||||||||||| ||||||||||| || ||||||| ||||||||||||||
Sbjct 1472 TGCTTTTGAGTTTGATCATGACCTGAGAAATTCATAGAGGTTAAGTAACTA 1522
> AT4G17360.1 | Symbols: | Formyl transferase | chr4:9703547-9705468
REVERSE LENGTH=1138
Length=1138
Score = 974 bits (527), Expect = 0.0
Identities = 788/915 (86%), Gaps = 14/915 (2%)
Strand=Plus/Plus
Query 116 TCTCGATTTCACGGCGAGTCCCTCGATTCCTCCGTCTCCCCTGTTCTCATCCCCGGCGTC 175
|||| ||||||||||||||||||||||||||| ||||| ||| ||||||| |||||| ||
Sbjct 79 TCTCAATTTCACGGCGAGTCCCTCGATTCCTCTGTCTCACCTCTTCTCATTCCCGGCTTC 138
Query 176 CATGTCTTCCATTGTCAGGATGCT-GTTGGAATTGTAGCAAAACTATCAGATTGTATTGC 234
|| ||||||||||||| ||||| | ||||| |||||||| ||||| ||||||||||||||
Sbjct 139 CACGTCTTCCATTGTCCGGATG-TCGTTGGGATTGTAGCGAAACTTTCAGATTGTATTGC 197
Query 235 TGCAAAAGGTGGCAACATTCTTGGCTACGATGTTTTTGTTCCTGAAAACAACAACGTCTT 294
||| ||||| || ||||||||||| || ||||||||||||||||| ||||| ||||||||
Sbjct 198 TGCTAAAGGAGGTAACATTCTTGGTTATGATGTTTTTGTTCCTGAGAACAAGAACGTCTT 257
Query 295 CTACTCTCGCAGTGAGTTTATATTTGATCCGGTTAAATGGCCGAGAAACCAAG-TGGATG 353
||||||| | |||||||||||||||||||| || ||||||||||| | | || ||||||
Sbjct 258 CTACTCTAGAAGTGAGTTTATATTTGATCCAGTAAAATGGCCGAGGAGGC-AGATGGATG 316
Query 354 AAGATTTTCAAACTATTGCACAAA-GAT-ACGGTGCCTTGAATTCGGTTGTGCGTGTGCC 411
|||||||||||||||||||||||| | | | | ||| |||| || || || || |||||
Sbjct 317 AAGATTTTCAAACTATTGCACAAAAGTTTA-G-TGCTTTGAGCTCAGTAGTACGAGTGCC 374
Query 412 TTCTATAGACCCCAAGTATAAGATAGCTCTTCTACTTTCAAAACAGGATCATTGTCTTGT 471
||| |||||||||| || ||||||||||||||||| || ||||||||||||||||| ||
Sbjct 375 CTCTTTAGACCCCAAATACAAGATAGCTCTTCTACTGTCGAAACAGGATCATTGTCTGGT 434
Query 472 CGAAATGTTGCATAAATGGCAGGACGGGAAACT-CCCAGTCGATATCACCTGTGTGATAA 530
|||||||| |||||||||||||| || ||||| ||| || ||||| || ||||||||||
Sbjct 435 TGAAATGTTACATAAATGGCAGGATGGAAAACTTCCC-GTTGATATAACATGTGTGATAA 493
Query 531 GCAATCATGAAAGAGCATCTAA-CACTCACGTTATGCGGTTTCTTGAGAGGCATGGCATC 589
| |||||||||||||| || || ||| || |||||| ||||||| ||||||||||||||
Sbjct 494 GTAATCATGAAAGAGC-TCCAAACACCCATGTTATGAGGTTTCTCCAGAGGCATGGCATC 552
Query 590 CCGTATCATTATGTATCGACAACTAAAGAGAATAAAAGAGAAGATGACATTTTGGAATTG 649
| ||||||||| || | ||||| | ||||||||| |||||| || ||||||||||||
Sbjct 553 TCTTATCATTATTTACCAACAACCGATCAGAATAAAATAGAAGAGGAGATTTTGGAATTG 612
Query 650 GTTAAAGACACTGATTTCCTAGTTCTTGCTAGATACATGCAGATTTTATCGGGTAACTTT 709
||||| | || ||||| |||||||| ||||||||||||||| | |||| ||||||||
Sbjct 613 GTTAAGGGTACCGATTTTCTAGTTCTCGCTAGATACATGCAGCTACTATCCGGTAACTTC 672
Query 710 TTGAAAGGTTATGGAAAGGATGTAATCAACATCCACCATGGTCTCTTACCATCATTTAAG 769
||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| ||
Sbjct 673 TTGAAAGGTTATGGAAAAGATGTAATCAACATCCATCATGGCCTCTTGCCATCATTCAAA 732
Query 770 GGTGGATATCCCGCAAAACAGGCATTTGATGCTGGTGTGAAACTAATTGGAGCAACTAGT 829
|| || |||||| ||||||||||||||||| ||||||||||||||||| ||||| | |
Sbjct 733 GGAAGAAATCCCGTGAAACAGGCATTTGATGCAGGTGTGAAACTAATTGGTGCAACAACT 792
Query 830 CACTTTGTTACCGAGGAACTTGATTCAGGGCCTATTATTGAACAAATGGTTGAGAGTGTT 889
||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct 793 CACTTTGTTACAGAGGAGCTTGATTCAGGTCCTATCATTGAGCAAATGGTTGAGAGAGTT 852
Query 890 TCTCACCGAGACAACCTAAGGAGCTTTGTCCAGAAATCCGAGGACCTAGAGAAAAAATGC 949
|| ||||||||||| | |||||||||||||||||||| |||||||| |||||||| ||
Sbjct 853 TCCCACCGAGACAATTTGAGGAGCTTTGTCCAGAAATCAGAGGACCTTGAGAAAAAGTGT 912
Query 950 CTCACGAAAGCTATAAAATCTTACTGCGAACTACGGGTATTACCTTATGGCACAAACAAG 1009
|||| ||||||||||||||||||||||||||| || ||||| |||||||| ||| | |||
Sbjct 913 CTCATGAAAGCTATAAAATCTTACTGCGAACTGCGAGTATTGCCTTATGGGACACA-AAG 971
Query 1010 -ACTGTTGTATTCTA 1023
||||| ||||||||
Sbjct 972 GACTGTCGTATTCTA 986
> AT5G47440.1 | Symbols: | Plant protein of unknown function (DUF828)
with plant pleckstrin homology-like region | chr5:19243531-19245350
REVERSE LENGTH=1406
Length=1406
Score = 409 bits (221), Expect = 5e-113
Identities = 239/248 (96%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 1082 AGGATTCTCTATCGCATGCGATCGCTGAAACTCAGAGATTCCAGAGAGCATTTGGCAGCC 1141
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1375 AGGATTCTCTATCGCATGCGATTGCTGAGACTCAGAGATTCCAGAGAGCATTTGGCAGCC 1316
Query 1142 TCAAGGCAACTTACTAAGCGGAGATTAGACTGAATCCCAGCAACCCATCTCTGCTTCTGA 1201
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TCGAGGCAACTTACTAAGCGGAGATTAGACTGAATCCCAGCAACCCATCTCTGCTTCTGA 1256
Query 1202 ATCTTACTCTTGCACTTGAACTCTAAAAGGCCGTGTCCTGTTTTCAGACCAAAATAGACT 1261
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1255 ATCTTGCTCTTGCACTTGAACTCTAAAAGACCCTGTCCTGTTTTCAGACCAAAATAGACT 1196
Query 1262 TCTTCGGAATTTTCCCTCTCTTTCCTGTAAGGCCATGCACATATCTCGTCGCAGACTGCA 1321
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 1195 TCTTCGGAATTTTCCCTCTCTTTCCTGCAAGGCCATGCAGATATCTCGTCGCAGACTCCA 1136
Query 1322 TAAACAAC 1329
||||||||
Sbjct 1135 TAAACAAC 1128
> AT4G17350.1 | Symbols: | Plant protein of unknown function (DUF828)
with plant pleckstrin homology-like region | chr4:9701132-9703574
FORWARD LENGTH=1884
Length=1884
Score = 261 bits (141), Expect = 1e-68
Identities = 193/219 (88%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 1113 TCAGAGATTCCAGAGAGCATTTGGCAGCCTCAAGGCAACTTACTAAGCGGAGATTAGACT 1172
|||||||| |||| ||||||||||||||||||| |||| ||||| ||||||| |||||
Sbjct 1648 TCAGAGATCCCAGCGAGCATTTGGCAGCCTCAAAGCAATTTACTTGGCGGAGAAGAGACT 1589
Query 1173 GAATCCCAGCAACCCATCTCTGCTTCTGAATCTTACTCTTGCACTTGAACTCTAAAAGGC 1232
||| |||| |||||||||||||||| |||||||| ||||||||||||||||| ||||| |
Sbjct 1588 GAACCCCATCAACCCATCTCTGCTTGTGAATCTTGCTCTTGCACTTGAACTCCAAAAGAC 1529
Query 1233 CGTGTCCTGTTTTCAGACCAAAATAGACTTCTTCGGAATTTTCCCTCTCTTTCCTGTAAG 1292
| ||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 1528 CTTGTCCGGTTTTCAGACCGAAGTAGACTTCTTCTGAATTTTCCCTCTCTTTCCTGTAAG 1469
Query 1293 GCCATGCACATATCTCGTCGCAGACTGCATAAACAACGC 1331
|||| || || |||| ||||||||| |||| |||||||
Sbjct 1468 GCCAAGCTGATTTCTCATCGCAGACTCCATAGACAACGC 1430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73794801150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5