BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494244
Length=1963
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47380.1 | Symbols: | Protein of unknown function, DUF547 |... 2784 0.0
> AT5G47380.1 | Symbols: | Protein of unknown function, DUF547
| chr5:19221472-19224591 REVERSE LENGTH=1977
Length=1977
Score = 2784 bits (1507), Expect = 0.0
Identities = 1791/1926 (93%), Gaps = 27/1926 (1%)
Strand=Plus/Plus
Query 43 TTTCACTGATATTCTCTTGGAGACTTTGATCACTTGAGAGTATTCATCATCTGGGCTTAA 102
||| ||||| ||||| |||||||||||| | || | | ||||||||||| | ||||
Sbjct 52 TTTTACTGAGATTCTTTTGGAGACTTTG---A-TT---ACT-TTCATCATCTGAGTTTAA 103
Query 103 GGTTTTGGCTGAG----ATGGCTGGTTTTGATTTGAATAAAGACGGTAAAAAGCAGACAA 158
||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct 104 GGTTTTGGCTGAGATATATGGGTGGTTTTGATTTGAATAAAGACGGTAACAAGCAGAGAA 163
Query 159 AAAACGGAGATTCTTGGCATTGCCCGGATTCTCATAAACATGGACGCTCTAAAAGTGCGT 218
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 164 GAAACGGAGATTCTTGGCATTGCCTGGATTCTCATAAACATGGCCGCTCTAAAAGTGCGT 223
Query 219 CGTCAGAGCGAGATCTCCATGCTTCTGGTAATGGAGCTTCACAATCTGCCAACACCTTCA 278
|||||||||| ||||| || |||||||||||||||||||||||||||| |||| |||||
Sbjct 224 CGTCAGAGCGGGATCTTCACACTTCTGGTAATGGAGCTTCACAATCTGCAAACAACTTCA 283
Query 279 CTAGAATGCAAACATCCTTTGTCCAAACAACAGCAAACAAGAGACCAAAACCTCTGCATA 338
||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 284 CTAGAATGCAAGCATCCTCTGTTCAAACAACAGCAAACAAGAGACCAAAACCACTGCATA 343
Query 339 ATTGTCAGATATTAATTAAAAACAGTGTGTCTTCGAACGACAGAGCATCCTTGGAACGCG 398
|||||||||| |||| |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 344 ATTGTCAGATGTTAACTAAAAACAATGTGTCTTCTAACGACAGAGCATCCTTGGAACGCG 403
Query 399 ATGTTGAACAGCTACACCTTCGTCTGCAACAAGAGAAATCTATGAGAATGGTGTTAGAGA 458
||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 404 ATGTTGAGCAGCTTCACCTTCGTCTTCAACAGGAGAAATCTATGAGAATGGTGTTAGAGA 463
Query 459 GAGCAATGGGCCGTGCTTCGAGCAGTTTATCTCCTGGGCATAGACA-TTTGACTGGTCAG 517
|||||||||||||||||||||||||||| ||||| ||||| ||||| |||| ||||||||
Sbjct 464 GAGCAATGGGCCGTGCTTCGAGCAGTTTGTCTCCAGGGCACAGACATTTTG-CTGGTCAG 522
Query 518 GCAAAGGAACTTATCACGGAGATTGAATTGCTTGAAGCAGAGGTCGCGAATCGCGAGCAT 577
||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 523 GCAAATGAACTTATCACGGAGATTGAGTTGCTTGAAGCAGAGGTCACGAATCGCGAGCAT 582
Query 578 CATGTGCTTTCTCTCTACCGGAGTATCTTTGAACAGACAGTAAGCAGAGCATCTTCAGAA 637
|||||||||||||| || || ||||| |||||||||||||||||||||||| |||| |||
Sbjct 583 CATGTGCTTTCTCTATATCGAAGTATATTTGAACAGACAGTAAGCAGAGCACCTTCCGAA 642
Query 638 CAAAGCTCAAGCATTTCTTCTCCAGCTCATCATATAAAGCAGCCACCAAGAAAAC---AC 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 643 CAAAGCTCAAGCATTTCTTCTCCAGCTCATCATATAAAGCAGCCACCAAGAAAACAAGAC 702
Query 695 CCAAGTGTTATTTCAAATGCATTTTGTTCCTCCAAGAATTTCCCTCTAAAGCCTTTGCAT 754
|||| |||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 703 CCAAATGTTATTTCAAATGCATTTTGTTCCTCCAATAATTTCCCTCTAAAGCCGTGGCAT 762
Query 755 GCTATGATTATTTTTAAAGATTCGAGTAGAAAAACCTCCAAAAAGGACCAATCTTCTCAG 814
|||||| ||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 763 GCTATGGTTACTCTTAAAGATTCGAGTAGAAAAACTTCCAAAAAGGACCAATCTTCTCAG 822
Query 815 TTCCAGTTCAGAAACTGTATTCCTTCAACAACAAGTTGTTCAAGTCAAGCAAAATCTCA- 873
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 823 TTCCAGTTCAGAAACTGTATTCCTTCAACAACAAGTTGCTCAAGTCAAGCAAAATCCCAC 882
Query 874 -T-TTAAAGGATTCAGTGACAGTGAAGTCTCCATCGCAGAGAACTCTAAAGGATCATTTG 931
| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 883 TTCTTAAAGGATTCAGTAACAGTGAAGTCTCCATCTCAGAGAACTCTTAAGGATCATTTG 942
Query 932 TACCAATGCCCAAACAATTTGTCTGAAGATATGGTCAAGTGTATGGCTTCTGTGTACTTC 991
||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct 943 TACCAATGCCCAAACAAGTTGTCTGAAGATATGGTCAAGTGTATGTCTTCAGTGTACTTC 1002
Query 992 TGGCTCTGCTGCACTGCCATGTCAGCAGATCCTGAAAGGAGAACCCTATCAAGATCATCT 1051
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1003 TGGCTCTGCTGCAGTGCCATGTCAGCAGATCCTGAAAAGAGAATCCTATCAAGATCATCT 1062
Query 1052 ACTAGCAATGTGATCATCCCCAAGAACATTATGAATGAAGACAGAGCTTGGTCTTGCAGA 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1063 ACTAGCAATGTGATCATCCCCAAGAACATTATGAATGAAGACAGAGCTTGGTCCTGCAGA 1122
Query 1112 TCCATGGTGGAAGTATCTTGTATCTCATCAGACAAGAGAAGATTTTCTCAAGCATCATAT 1171
|||||||||||||||||||| |||||||||||||||| |||||||||||||| | | |||
Sbjct 1123 TCCATGGTGGAAGTATCTTGGATCTCATCAGACAAGAAAAGATTTTCTCAAGTAACGTAT 1182
Query 1172 GCTATTAACAACTATAGGCTCCTTGTTGAACAACTAGAGAGAGTTACTATAAATCAAATG 1231
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 GCTATCAACAACTATAGGCTCCTTGTTGAACAACTAGAGAGAGTTACTATAAATCAAATG 1242
Query 1232 GAAGACAATGCAAAGCTAGCATTTTGGATCAACATATACAATGCTCTCCTTATGCATGCA 1291
|||| |||||||||| |||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1243 GAAGGCAATGCAAAGTTAGCCTTTTGGATCAACATATACAATGCTCTCCTCATGCATGCA 1302
Query 1292 TACTTAGCATATGGTGTACCTGCTAATTCCCTCAGAAGGTTAGCTTTGTTTCACAAGTCT 1351
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1303 TACTTAGCATATGGTGTACCTGCTCATTCCCTCAGAAGGTTAGCTTTGTTTCACAAGTCT 1362
Query 1352 GCGTATAATATCGGTGGACACATCATCAATGCAAACACCATTGAATACTCTATCTTCTGC 1411
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 GCGTATAATATCGGTGGGCACATCATCAATGCAAACACCATTGAATACTCTATCTTCTGC 1422
Query 1412 CTCCAGACTCCACGGAATGGACGTTGGCTTGAGATCATTATTTCCACCGCCTTGAGGAAG 1471
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1423 TTCCAGACTCCACGGAATGGACGTTGGCTTGAGACCATTATTTCCACCGCCTTGAGGAAG 1482
Query 1472 AAACTAGCTGAAGGTAAAGTAA-GCTCAATGTTCAGCCTTCACAAACCAGAGCCACTTGT 1530
|||| |||||||| |||||||| | |||||||| |||||| |||||||||||||||||||
Sbjct 1483 AAACCAGCTGAAGATAAAGTAAAG-TCAATGTTTAGCCTTGACAAACCAGAGCCACTTGT 1541
Query 1531 CTGTTTTGCTCTTTGCACTGGTGCTCTTTCAGATCCAGTGCTAAAAGCCTACACTGCATC 1590
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1542 CTGTTTTGCTCTTTGCATTGGTGCTCTATCAGATCCAGTGCTAAAAGCCTACACTGCATC 1601
Query 1591 AAACGTTAAAGAGGAATTAGAAGCTTCGAAAAGAGAGTTTCTTGGAGCAAACGTGGTTGT 1650
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1602 AAACGTTAAAGAGGAATTAGATGCTTCAAAAAGAGAGTTTCTTGGAGCAAACGTGGTTGT 1661
Query 1651 AAAGATGCAGAAGAAAGTGTTGTTACCTAAGATTATAGAGAGGTTTACAAAGGAAGCTTC 1710
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1662 AAAGATGCAGAAGAAAGTGTTATTACCTAAGATTATAGAGAGGTTTACAAAGGAAGCTTC 1721
Query 1711 TCTGAGCTCTGATGATTTGATGAGATGGGTAATAGATTGCTCAGACGAAAAGCTTGGGGA 1770
|||||||| |||||| ||||||||||| |||||||| | |||||||||||||||| ||
Sbjct 1722 TCTGAGCTTTGATGACCTGATGAGATGGTTAATAGATAACGCAGACGAAAAGCTTGGAGA 1781
Query 1771 ATCGATACAAAAATGCGTACAAGGTAAACCAAACAACAAGAAATCGTCTCAGGTCGTTGA 1830
||| |||||||||||||||||||| |||||||||||||||||| | || |||||||| ||
Sbjct 1782 ATCAATACAAAAATGCGTACAAGGCAAACCAAACAACAAGAAAGCATCGCAGGTCGTCGA 1841
Query 1831 ATGGTTGCCATACAGTTCAAAGTTCCGTTACGTTTTCTCAAAGGACTTGATGGAGAAAAA 1890
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 1842 ATGGTTGCCATACAGTTCAAAATTCCGTTATGTTTTCTCCAAGGACTTGATGGAGAAAAA 1901
Query 1891 GCCATGTGAGACAATGAAAAATG-TATTTTCTTGTGTACAAGACAAACTGTCA-CTT-CC 1947
||| ||||||||||||||||| | ||| ||||||||||||| ||||| || ||| ||
Sbjct 1902 GCCCTGTGAGACAATGAAAAAGGCTATC--CTTGTGTACAAGAGAAACTATCTTCTTTCC 1959
Query 1948 CAGACC 1953
||||||
Sbjct 1960 CAGACC 1965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97238455665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5