BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494245
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47370.1 | Symbols: HAT2 | Homeobox-leucine zipper protein 4... 1770 0.0
AT4G17460.1 | Symbols: HAT1 | Homeobox-leucine zipper protein 4... 363 3e-99
> AT5G47370.1 | Symbols: HAT2 | Homeobox-leucine zipper protein
4 (HB-4) / HD-ZIP protein | chr5:19216312-19217909 REVERSE
LENGTH=1284
Length=1284
Score = 1770 bits (958), Expect = 0.0
Identities = 1194/1299 (92%), Gaps = 51/1299 (4%)
Strand=Plus/Plus
Query 1 AATAATGATGGATTGCAATTAGCCACCTGACAAAATCTCTCATCATTCAAAGTACTATAT 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATAATGATGGATTGTAATTAGCCACCTGACAAAATCTCTCATCATTCAAAGTACTATAT 60
Query 61 TAATCCCCTCTCTTCTTCAATACCATCTCACA----TCTC----TCTC-T-----AAGAG 106
||||||||||||||||||| |||||||||||| |||| |||| | |||||
Sbjct 61 TAATCCCCTCTCTTCTTCATTACCATCTCACATCTCTCTCTATTTCTCTTCCACAAAGAG 120
Query 107 TCCTAACTTCGAGTTGAAAC-AA-ACCATCTGT-AT-TAT-TTTCAAG-AAGAACAAAAC 160
|||||||||||||||||||| || ||||| | | || | | | || || |||||| ||||
Sbjct 121 TCCTAACTTCGAGTTGAAACAAACACCATTTCTCATCTCTATCTC-AGAAAGAAC-AAAC 178
Query 161 CTTTTCGTGTTCTTTCTTTCTTTCTCTATTCTCCTAAGAAAAGATAATTCTTGAAACTGT 220
| ||||||| |||||||||||||||||||| |||| ||| ||||||| |||||||||
Sbjct 179 CATTTCGTG----TTCTTTCTTTCTCTATTCTCATAAGGAAATATAATTCCTGAAACTGT 234
Query 221 TGAGTTCTTGTG-GAGGAAAT-CAAATCATGATGATGGGAAAAGAAGATCTGGGTTTGAG 278
|||||||||||| ||||||| ||| |||||||||||| ||||||||||| ||||||||
Sbjct 235 TGAGTTCTTGTGAAAGGAAATAAAAAACATGATGATGGGCAAAGAAGATCTAGGTTTGAG 294
Query 279 CTTAAGCTTAGGGTTTTCACAAAA-CAGCAATCCTCTTCAGCTGAATCTGAATCCTAACT 337
| |||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 295 CCTAAGCTTAGGGTTTTCACAAAATCA-CAATCCTCTTCAGATGAATCTGAATCCTAACT 353
Query 338 CTTCATTATCAAACAATCTCCAGAGA-TACCCATGGAACCAAACATTCGCTCCTACATCA 396
|||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct 354 CTTCATTATCAAACAATCTCCAGAGACT-CCCATGGAACCAAACATTCGATCCTACATCA 412
Query 397 GATCTTCGCAAAATAGACGTGAATAGTTTTCCATCAACGACTAACTGCGAGGAAGAAACA 456
||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||| |||
Sbjct 413 GATCTTCGCAAGATAGACGTGAACAGTTTTCCATCAACGGTTAACTGCGAGGAAGACACA 472
Query 457 GGAGTTTCGTCTCCAAACAGTACGATCTCAAGCACCATAAGTGGGAAGAGGAGTGAGAGA 516
||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 473 GGAGTTTCGTCACCAAACAGTACGATCTCAAGCACCATTAGCGGGAAGAGAAGTGAGAGA 532
Query 517 GAAGGAATCTCCGGCACCGGCGTTGGCTCCGGCGACGATCACGACGAGATCACTCCGGAT 576
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GAAGGAATCTCCGGAACCGGCGTTGGCTCCGGCGACGATCACGACGAGATCACTCCGGAT 592
Query 577 CGAGGGTATTCACGTGGAACCTCCGACGAAGAAGAAGACGGCGGCGAAACGTCGAGGAAG 636
|||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 593 CGAGGGTACTCACGTGGAACCTCAGATGAAGAAGAAGACGGGGGCGAAACGTCGAGGAAG 652
Query 637 AAGCTCCGGTTATCGAAAGATCAGTCTGCTTTTCTCGAAGAGACATTCAAAGAACACAAC 696
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 653 AAGCTCAGGTTATCAAAAGATCAGTCTGCTTTTCTCGAAGAGACTTTCAAAGAACACAAC 712
Query 697 ACTCTCAATCCCAAACAAAAGCTAGCTCTGGCTAAGAAGCTGAACTTGACGGCACGACAA 756
||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 713 ACTCTCAATCCCAAACAGAAGCTAGCTTTGGCTAAGAAGCTGAACTTGACGGCAAGACAA 772
Query 757 GTGGAAGTGTGGTTCCAAAACAGAAGAGCTAGAACCAAGTTAAAGCAAACGGAGGTAGAT 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GTGGAAGTGTGGTTCCAAAACAGAAGAGCTAGAACCAAGTTAAAGCAAACGGAGGTAGAT 832
Query 817 TGCGAGTACTTGAAACGGTGCGTAGAGAAGCTAACGGAAGAGAATCGGAGACTTCAGAAA 876
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 833 TGCGAATACTTGAAACGGTGCGTAGAGAAGCTAACGGAAGAGAACCGGAGACTTCAGAAA 892
Query 877 GAGGCTATGGAGCTTCGAACTCTCAAGCTGTCTCCACAATTCTACGGCCAGATGACTCCA 936
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 893 GAGGCTATGGAGCTTCGAACTCTCAAGCTGTCTCCACAATTCTACGGTCAGATGACTCCA 952
Query 937 CCCACTACACTCATCATGTGTCCTTCGTGCGAGCGTGTGGCTGGCCCATCATCATCGAAC 996
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 953 CCAACTACACTCATCATGTGTCCTTCGTGCGAGCGTGTGGGTGGCCCATCATCATCGAAC 1012
Query 997 CATCACCATAATCACAGGCCCGTTTCGATCAACCCGTGGGTTGCTTGTGCTGGTCAAGTT 1056
|||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 1013 CATCACCACAATCACAGGCCCGTTTCTATCAATCCGTGGGTTGCTTGTGCTGGTCAGGT- 1071
Query 1057 GG-TCATGGGCTGAATTTTGAAGCCTTGCGTCCACGATCGTGATTTTTAATTT-AGTGG- 1113
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1072 GGCTCATGGGCTGAATTTTGAAGCCTTGCGTCCACGATCGTGATTTTTTATTTTAGTGGT 1131
Query 1114 GG-AAA-GGGTGTTCTGGTATTTTTCGTTATTGTTATG--GTCTATCTGTGTAGGGTCAT 1169
|| ||| ||||||| |||||||||||||||| ||||| |||||||||||| |||||||
Sbjct 1132 GGGAAAAGGGTGTTTTGGTATTTTTCGTTATCGTTATATAGTCTATCTGTGTGGGGTCAT 1191
Query 1170 TGTAATTTTGGATGATTGGCCTTCTCATGAACTAGTCCTATAGTCCTATGTATGATCTGC 1229
||||||||||||||||||||||||||||||||||||||||| || ||| ||| |
Sbjct 1192 TGTAATTTTGGATGATTGGCCTTCTCATGAACTAGTCCTAT-GT---ATG-ATG--C--- 1241
Query 1230 AACCTTAAAAT-ATTTAAATTAGCAAAAATTAGTTACAA 1267
|||||||||| |||||||||||||||||||||||||||
Sbjct 1242 AACCTTAAAAAGATTTAAATTAGCAAAAATTAGTTACAA 1280
> AT4G17460.1 | Symbols: HAT1 | Homeobox-leucine zipper protein
4 (HB-4) / HD-ZIP protein | chr4:9739663-9741146 FORWARD LENGTH=1211
Length=1211
Score = 363 bits (196), Expect = 3e-99
Identities = 606/796 (76%), Gaps = 60/796 (8%)
Strand=Plus/Plus
Query 241 CAA-ATCATGATGATGGGAAAAGAAGATCTGGGTTTGAG-CTTAAGCTTAGGG-TTTTCA 297
||| |||||||||||||| ||||| ||| ||||||| || ||| ||||| ||| ||| ||
Sbjct 193 CAATATCATGATGATGGGTAAAGAGGATTTGGGTTTAAGTCTT-AGCTT-GGGATTTGCA 250
Query 298 CAAAACAGCAATCCTCTTCAGCTGAATCTGAATCCTAAC-TCTTCA-TTATCAAACAATC 355
|||||| | ||||||| ||||| ||||| || || || |||||| || |||||
Sbjct 251 CAAAAC--C-ATCCTCTCCAGCTAAATCTTAAACC-CACTTCTTCACCAAT-GTCCAATC 305
Query 356 TCCAGA-GATACCCATGGAACCAAA--CAT-TCGC-TCCT---A-CATC---AG----A- 398
|||||| | | ||||||||||||| | | | | |||| | || | || |
Sbjct 306 TCCAGATG-TTTCCATGGAACCAAACCCTTGTTTCTTCCTCAGATCAACAAAAGCAACAG 364
Query 399 --TCTTCGCAAAATAGACGTGAATAGTTTTCCATCAAC-GACTAACTGCGAGGAAGAAAC 455
|||| | ||||| |||||||| || || ||| |||| | | || || || || ||
Sbjct 365 TTTCTTAGGAAAATCGACGTGAACAGCTTGCCAACAACGGTGGATTTG-GAAGAGGAGAC 423
Query 456 AGGAGTTTCGTCTCCAAACAGTACGATCTCAAGCACCA-TAAGTGGGAAGAGGAGTGAG- 513
|||||||||||||||||||||||||||||| |||| || | ||||| |||||||| |||
Sbjct 424 AGGAGTTTCGTCTCCAAACAGTACGATCTCGAGCA-CAGTGAGTGGAAAGAGGAG-GAGT 481
Query 514 A--GAGAAG-GAATCTCCGGCACCGGCGTTGGCTCCGGCGACGATCACGACGAGATCACT 570
| || ||| ||| | | | |||| | ||| | | | || ||| || || ||||||
Sbjct 482 ACTGA-AAGAGAAGGTAC--CTCCGGTGGTGGTTGC-G-GA-GATGACCTTGACATCACT 535
Query 571 CCGGATCGAGGGTATTCACGTGGAACCTCCGACGAAGAAGAAG---ACGGCGGCGAAACG 627
| ||| || | ||||||||||||||||| ||||| |||| |||| || || ||
Sbjct 536 CTAGATAGATCTTCCTCACGTGGAACCTCCGATGAAGAGGAAGATTACGGAGGTGAGAC- 594
Query 628 TCG-AGGAAGAAGCTCCGGTTATCGAAAGATCAGTCTGCTTTTCTCGAAGAGACATTCAA 686
| | ||||||||||| | |||| |||||||| || || |||||||||| || |||||
Sbjct 595 TTGTAGGAAGAAGCTTAGACTATCCAAAGATCAATCCGCAGTTCTCGAAGACACTTTCAA 654
Query 687 AGAACACAACACTCTCAATCCCAAACAAAAGCTAGCTCTGGCTAAGAAGCTGA-ACTTGA 745
||| ||||| ||||||||||||||||| ||||| ||| ||||||||||||| | || |
Sbjct 655 AGAGCACAATACTCTCAATCCCAAACAGAAGCTGGCTTTGGCTAAGAAGCT-AGGTTTAA 713
Query 746 CGGCACGACAAGTGGAAGTGTGGTTCCAAAACAGAAGAGCTAGAACCAAGTTAAAGCAAA 805
| ||| |||||||||||||||||||||||||||||||||| || || ||||||||||| |
Sbjct 714 CAGCAAGACAAGTGGAAGTGTGGTTCCAAAACAGAAGAGCAAGGACAAAGTTAAAGCAGA 773
Query 806 CGGAGGTAGATTGCGAGTACTTGAAACGGTGCGTAGAGAAGCTAACGGAAGAGAATCGGA 865
| || || ||||||||||| |||||| | || || ||||| |||||||||||||||||
Sbjct 774 CCGAAGTGGATTGCGAGTATTTGAAAAGATGTGTTGAGAAATTAACGGAAGAGAATCGGC 833
Query 866 GACTTC-AGAAAGAGGCTAT-GGAGCTTCGAAC-TCTCAAGCTGTCTCCACAATTCTACG 922
| || | |||||||||| | ||| || || | | | ||||| || || | || || |
Sbjct 834 GGCT-CGAGAAAGAGGC-AGCGGAACTAAGAGCAT-TAAAGCTTTCACCGCGGTTGTATG 890
Query 923 GCCAGATGACTCCACCCACTACACTCATCATGTGTCCTTCGTGCGAGCGTGTGGCTGGCC 982
| ||||||| |||||| || ||||| | |||||||| ||||| || |||||||| || |
Sbjct 891 GTCAGATGAGTCCACCGACCACACTTTTGATGTGTCCATCGTGTGAACGTGTGGCCGGAC 950
Query 983 CATCATCATCGAACCA 998
|||| ||||| |||||
Sbjct 951 CATCCTCATCTAACCA 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62298876345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5