BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494250
Length=1066
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47310.1 | Symbols: | PPPDE putative thiol peptidase family... 1533 0.0
AT4G17486.1 | Symbols: | PPPDE putative thiol peptidase family... 529 2e-149
> AT5G47310.1 | Symbols: | PPPDE putative thiol peptidase family
protein | chr5:19200782-19202921 FORWARD LENGTH=1167
Length=1167
Score = 1533 bits (830), Expect = 0.0
Identities = 996/1071 (93%), Gaps = 31/1071 (3%)
Strand=Plus/Plus
Query 3 tttttGCAGAGATTTTAGGAGGAGGAACATGATGATTGTTTGAATTGGGAGAGACAGTTC 62
|||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 119 TTTTTGCAGAGATTTT---AGGAGGAAC---ATGATTGTTTGAATTGGGAGAGACA---- 168
Query 63 TTCGTTCGTGTAAAATGCGGGTACTTGGTTTGAGCTCAAGCTTATGTTCAGGTGAGGACA 122
|| ||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |
Sbjct 169 TTGGTTCGTGTAAAATGCGGGTGCTTGGTTTGAGCTCAAGCTTATGCTCTGGTGAGGATA 228
Query 123 AGGAAGAAGAAGAGA-CAACTGGAGAAGGCTGTCTCACTCCTGTTTATCTCAACGTCTAT 181
||||||||||||||| || ||||||||||| |||||| |||||||||||||||||||||
Sbjct 229 AGGAAGAAGAAGAGATTAA-TGGAGAAGGCTCTCTCACGCCTGTTTATCTCAACGTCTAT 287
Query 182 GATCTGACTCCTGTCAACAATTATCTCTATTGGTTCGGTCTTGGCATATTTCACTCTGGC 241
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 288 GATCTAACTCCTGTCAACAATTATCTCTATTGGTTCGGCCTTGGCATATTTCACTCTGGC 347
Query 242 ATTGAGGCTCATGGTTTCGAATATGGATATGGGGCTCATGAGTATTCGAGCAGTGGGGTA 301
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 348 ATTGAGGCTCATGGTTTCGAATATGGATATGGAGCTCATGAGTATTCGAGCAGTGGGGTA 407
Query 302 TTTGAGGTTGAACCTAGGAGCTGTCCAGGTTTCATCTTTAGGCGCTCAGTTTTGTTGGGA 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 TTTGAGGTTGAACCTAGGAGCTGTCCAGGTTTCATCTTTAGGCGCTCAGTTTTGTTGGGA 467
Query 362 ACCACCAGCATGTCTCGCTCAGATTTCCGCTCTTTCATGGAGAAGCTTTCGAGAAAATAT 421
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 468 ACCACCAGCATGTCTCGCTCTGATTTCCGCTCCTTCATGGAGAAGCTTTCGAGAAAGTAT 527
Query 422 CATGGGGACACATACCATTTAATCGCCAAGAACTGTAACCATTTCACTGAAGAAGTATGC 481
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 528 CATGGGGACACATACCATTTGATTGCCAAAAACTGTAACCATTTCACTGAAGAAGTATGC 587
Query 482 TTGCAGGTAACAGGAAAGCCTATTCCCGGATGGATTAATCGGATGGCCCGAGTAGGTTCT 541
|||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||
Sbjct 588 TTGCAGGTAACAGGAAAGCCTATTCCTGGATGGATTAATAGGATGGCTCGAGTTGGTTCG 647
Query 542 TTCTGTAACTGTATCCTTCCAGAAAGCATACAGCTCTCATCTGTTAATCATCCCGAAGCC 601
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 648 TTCTGTAACTGTATCCTTCCAGAAAGCATACAGCTCTCATCGGTTAATCATCCTGAAGCC 707
Query 602 CTCGAGTTCTCTGATGATAACGATGGATCAGAAGAATCAGTTGCATCTTCCGTATCATAT 661
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 708 CTCGAGTTCTCTGATGATAACGATGGATCAGAAGAATCAGTTGCATCTTCTGTGTCATAC 767
Query 662 GAAACAGATGGAGAAGGATCGGATCATCATCTCATAACAGCACCAAACAGCGACATTGCG 721
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 768 GAAACAGATGGAGAAGGATCGGATCATCATCTCATAACAGCACCAAACAGCGATATTGCG 827
Query 722 TATCTACAAGACAGACCAGTGAGACTTGCCCGTGAACTCCTCCAAGAACCAACCGATGAT 781
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 828 TATCTACAGGACAGACCAGTGAGACTTGCCCGTGAGCTCCTCCAAGAACCAACCGATGAT 887
Query 782 GCATCTCCGCCGTACTTGTTGAAGCGTTCTTGATCATCACAATCATCAAGAACTTGTGTT 841
||||||||| ||||||||||||||| || |||||||||||| |||||| ||||||||||
Sbjct 888 ACATCTCCGCAGTACTTGTTGAAGCGGTCCTGATCATCACAAGCATCAACAACTTGTGTT 947
Query 842 GTCTGTAAACAGAAGTGAGGCAATGGGTCCAT-T-TTGAGTATTCTTTAGATCTATAAAT 899
|||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||| |
Sbjct 948 GTCTGTAAACAG---TGAGGCAATGGGTCCATATATTGAGTATTCTTTGGATCTATAAGT 1004
Query 900 GTaaaaaaaGATT-AA--TTTAAATGAGAACCCATCTAAGATGTTGGATTGTGTAGTGTA 956
||||||||||||| || ||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 1005 GTAAAAAAAGATTTAAGATTTAAATCAGAACCCATCTGAGATGTTGGATTGT--AGTGTA 1062
Query 957 AGATT-AGAGACAAATGGTGTGAATTTGTTGACAAAATTGTGCCTTCTTCTTCTCTCAAT 1015
||||| ||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 1063 AGATTTAGAGACAAATGGTGTGAC-------A-AAAATTGTGCCTTCTTCTTCTCCCAAT 1114
Query 1016 GTGAGTTCACATTTCAGAGTCATAATTCGTAAGATTTGCGAGACTACTAAT 1066
||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1115 GTGAGTTCACATTTCAGTGTCATAATTCGTAAGATTTGCGAGACTAATAAT 1165
> AT4G17486.1 | Symbols: | PPPDE putative thiol peptidase family
protein | chr4:9749728-9751709 REVERSE LENGTH=1084
Length=1084
Score = 529 bits (286), Expect = 2e-149
Identities = 560/688 (81%), Gaps = 36/688 (5%)
Strand=Plus/Plus
Query 70 GTGTAAAATGCGGGTACTTGGTTTGAGCTCAAGCTTATGTTCAGGTGAGGACAAGGAAGA 129
|||||||||| |||| | | ||||||||||||| ||||||| |||| || ||| ||
Sbjct 139 GTGTAAAATGTGGGTGCCTACATTGAGCTCAAGCTCATGTTCAAGTGATGA-GAGG--GA 195
Query 130 AGAAGAGACAACTGGAGAAGGCTG-TCTCACTCCTGTTTATCTCAACGTCTATGATCTGA 188
| |||| | | ||||||| || | || || || ||||||||||| ||||||||||| |
Sbjct 196 TG-AGAG-C-AGTGGAGAA-GCCGCGCTTACGCCGGTTTATCTCAATGTCTATGATCTAA 251
Query 189 CTCCTGTCAACAATTATCTCTATTGGTTCGGTCTTGGCATATTT-CACTCTGGCATTGAG 247
| |||||||||||||| || |||||||| || ||||||| ||| || ||||| ||||||
Sbjct 252 CGCCTGTCAACAATTACCTTTATTGGTTTGGGATTGGCAT-TTTCCATTCTGGTATTGAG 310
Query 248 GCTCATGGTTTCGAATATGGATATGGGGCTCATGAGTATTCGAGC-AGTGGGGTATTTGA 306
|||||| ||| |||||| | ||||| ||||| ||||| || | | |||||||||| |||
Sbjct 311 GCTCATAATTTGGAATATTGCTATGGAGCTCACGAGTA-TCCAACAAGTGGGGTATATGA 369
Query 307 GGTTGAACCTAGGAGCTGTCCAGGTTTCATCTTTAGGCGCTCAGTTTTGTTGGGAACCAC 366
||| |||||||||| ||||||||| ||||||||||| || || ||||| ||||||| ||
Sbjct 370 GGTGGAACCTAGGAACTGTCCAGGGTTCATCTTTAGACGGTCGGTTTTACTGGGAACTAC 429
Query 367 CAGCATGTCTCGCTCAGATTTCCGCTCTTTCATGGAGAAGCTTTCGAGAAAATATCATGG 426
||||||||| || |||||||||||||| | ||||||||||||||| ||||| || |||||
Sbjct 430 CAGCATGTCCCGTTCAGATTTCCGCTCATACATGGAGAAGCTTTCAAGAAAGTACCATGG 489
Query 427 GGACACATACCATTTAATCGCCAAGAACTGTAACCATTTCACTGAAGAAGTATGCTTGCA 486
||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 490 TGACACTTACCATTTGATTGCCAAGAACTGTAACCATTTCACTGAAGAAGTATGCTTGCA 549
Query 487 GGTAACAGGAAAGCCTATTCCCGGATGGATTAATCGGATGGCCCGAGTAGGTTCTTTCTG 546
| ||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct 550 GCTAACAGGAAAGCCTATTCCAGGATGGATTAATCGGCTGGCCCGAGTAGGTTCCTTCTG 609
Query 547 TAACTGTATCCTTCCAGAAAGCATACAGCTCT-CATCTGTTAAT-CA-T-CCCGAA-GCC 601
||| ||| | || ||||||||||| ||||| | || |||||| | | | |||||| |||
Sbjct 610 TAATTGTCTTCTGCCAGAAAGCATTCAGCT-TACAGCTGTTAGTGCTCTTCCCGAACGCC 668
Query 602 CTCGAGTTCTCTGATGATAACGATGGATCAGAAGAATCAGTTGCATCTTCCGTATCATAT 661
| || ||||| ||||| |||| |||| || |||| |||||||| || ||| ||
Sbjct 669 TT-GAATTCTCCGATGAG---GATGAATCA-AAC--TCAGAGGCATCTTCTGTGTCAGAT 721
Query 662 GAAACAGATGGAGAAGGATCGGATCATCATCTCATAACA-GCACCAAACAGCGACATTGC 720
||| || || | ||| || || |||||||||| | | | || |||| || ||||
Sbjct 722 GAA---GA---AG--G-ATCAGAGCAGCATCTCATAA-ATGTAGCAGACAGAGAGATTGT 771
Query 721 GTATCTACAAGACAGACCAGTGAGACTT 748
|||||||||| ||| ||||||| |||||
Sbjct 772 GTATCTACAAAACAAACCAGTGCGACTT 799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52208566800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5