BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494253
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47230.1 | Symbols: ERF5, ATERF-5, ATERF5 | ethylene respons... 1088 0.0
AT4G17490.1 | Symbols: ATERF6, ERF-6-6, ERF6 | ethylene respons... 340 1e-92
AT5G47220.1 | Symbols: ATERF2, ATERF-2, ERF2 | ethylene respons... 106 5e-22
> AT5G47230.1 | Symbols: ERF5, ATERF-5, ATERF5 | ethylene responsive
element binding factor 5 | chr5:19179939-19181129 FORWARD
LENGTH=1191
Length=1191
Score = 1088 bits (589), Expect = 0.0
Identities = 710/764 (93%), Gaps = 25/764 (3%)
Strand=Plus/Plus
Query 413 AAATCAAAATCAAG-TTGAACCGGAGATTCAATCTCAAATTCGTAAACCGCCATTGAAAA 471
||||||||||| || ||||||||||| || |||||||||||||||||||||||||||| |
Sbjct 445 AAATCAAAATC-AGTTTGAACCGGAGCTTAAATCTCAAATTCGTAAACCGCCATTGAAGA 503
Query 472 TCTCGCTTCCAGCTAAAACAGAGTGGATCCAATTCGCACCTGAAATTACCAAACCGGAAG 531
| |||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||
Sbjct 504 TTTCGCTTCCAGCTAAAACAGAGTGGATTCAATTCGCAGCTGAAAACACCAAACCGGAAG 563
Query 532 TTACTAAACCGGTTTCAGAAGAAGAGAAGAAGCATTACAGAGGAGTGAGACAAAGACCGT 591
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 564 TTACTAAACCGGTTTCGGAAGAAGAGAAGAAGCATTACAGAGGAGTAAGACAAAGACCGT 623
Query 592 GGGGGAAATTCGCGGCGGAGATTCGTGACCCGAATAAACGCGGATCCCGCGTTTGGCTTG 651
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 624 GGGGGAAATTCGCGGCGGAGATTCGTGACCCGAATAAACGCGGATCTCGCGTTTGGCTTG 683
Query 652 GGACGTTTGATACAGCGATTGAAGCGGCAAGAGCTTATGATGAAGCAGCGTTTAGGCTTC 711
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |
Sbjct 684 GGACGTTTGATACAGCGATTGAAGCGGCTAGAGCTTATGACGAAGCAGCGTTTAGACTAC 743
Query 712 GAGGTTCGAAAGCGATTTTGAATTTCCCTCTTGAAGTTGGGAAGTGGAAACCACGCGCCG 771
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GAGGATCGAAAGCGATTTTGAATTTCCCTCTTGAAGTTGGGAAGTGGAAACCACGCGCCG 803
Query 772 ACGAAGGTGAGAAGAAACGGAAGAGAGACAACGATGAAGATGAGAAAGTGACAGTGGTTG 831
| ||||||||||||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 804 ATGAAGGTGAGAAGAAACGGAAGAGAG---ACGAT---GATGAGAAAGTGACTGTGGTTG 857
Query 832 AGAAAGTGTTGAAGACGGAACAGAGCGTTGACGTTAACGGTGGAGAGACGTTTCCGTTTG 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 AGAAAGTGTTGAAGACGGAACAGAGCGTTGACGTTAACGGTGGAGAGACGTTTCCGTTTG 917
Query 892 TAACGTCGAATTTAACGGAGTTATGTGACTGGGACTTAACGGGGTTTCTTAACTTTCCGC 951
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 918 TAACGTCGAATTTAACGGAATTATGTGACTGGGATTTAACGGGGTTTCTTAACTTTCCGC 977
Query 952 TTCTGTCGCCGTTATCTCCTCATCCATCGTTTGGTTATTCTCAGTTGACCGTTGTTTGAt 1011
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 978 TTCTGTCGCCGTTATCTCCTCATCCACCGTTTGGTTATTCCCAGTTGACCGTTGTTTGAT 1037
Query 1012 tt-ttttttttG-GTTTTGG--CTATGTGTATGCTGACGTGGACTTATGGTACACGTAGG 1067
| ||||||||| ||||| | | |||||||||||||||||||| | ||||||||||
Sbjct 1038 TAGTTTTTTTTGAGTTTTTGAACGATGTGTATGCTGACGTGGAC----G-TACACGTAGG 1092
Query 1068 TGCATGCGATTAGaaaaaaatatatatatatttgttcatatttttgc-ttatttctattt 1126
|||||||||| |||||||| || ||| | | |||||||||||||| || |||||||||
Sbjct 1093 TGCATGCGAT--GAAAAAAACATCTAT-T-T--GTTCATATTTTTGCGTT-TTTCTATTT 1145
Query 1127 gttcattctttttcACAAATCACAATACATTCTTTCAGTTAATG 1170
|||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1146 GTTCATTCTTTTTCACAATTCACAATACATTATTTCAGTTAATG 1189
Score = 453 bits (245), Expect = 2e-126
Identities = 362/417 (87%), Gaps = 14/417 (3%)
Strand=Plus/Plus
Query 1 AAGTCCCCTTGACGACAAAGTCACCAATGCTTCTCTCATATGTATATATACATCTTTCCA 60
|||||| || ||||||||||||||||||||||| | | |||||||||||| ||||||||
Sbjct 4 AAGTCCATTTCACGACAAAGTCACCAATGCTTCTTTTACATGTATATATACTTCTTTCCA 63
Query 61 CTCTCTCTTCTCTACTCAAATCAAATCCTCAACCATCTTCCTTCTCTATTTTCTTAAGTT 120
||| |||||||||||||||||||||| || |||||||||||| |||||||||| |
Sbjct 64 CTCCCTCTTCTCTACTCAAATCAAAT-CT------TCTTCCTTCTCTGTTTTCTTAAGCT 116
Query 121 TTTTGACAGTTTTATCAATGGCCACTCCTAACGAAGTATCTGCACTTTGGTTCATCGAGA 180
|||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 117 TTTTGAAAATTTTATCAATGGCGACTCCTAACGAAGTATCTGCACTTTGGTTCATCGAGA 176
Query 181 AACACCTACTCGACGAGACTTCACCGGTGGCTACAGACCCATGGATGAAGAAGGAATCAT 240
|||| |||||||||||| |||| || ||||||||||| |||||||||||| | |||||||
Sbjct 177 AACATCTACTCGACGAGGCTTCTCCTGTGGCTACAGATCCATGGATGAAGCACGAATCAT 236
Query 241 CA---GCAACTGAATCTAGCTCCGATTCTTCTTCTATGC-TCTTCCAATCATCATCGTCT 296
|| ||||| ||||||||||| || ||||||||||| | ||||| |||||| || |||
Sbjct 237 CATCAGCAACAGAATCTAGCTCTGACTCTTCTTCTAT-CATCTTCGGATCATCGTCCTCT 295
Query 297 TCTTTCTCTCCAAATGATTTCTCTGAATATGAATGCAAACCGGAAATCATTGATCTCGAT 356
|||||| | |||| |||||||||||||| | ||||||||| |||||||| |||||||||
Sbjct 296 TCTTTCGCCCCAATTGATTTCTCTGAATCCGTATGCAAACCTGAAATCATCGATCTCGAT 355
Query 357 ACACCGAGAT-TCATGGATTTTATATCGATTCCATTTGAATTTGACTCCGAAATTTC 412
|| || |||| | ||||| ||| ||||||||||||||||||||||||| ||| ||||
Sbjct 356 ACTCCCAGATCT-ATGGAATTTCTATCGATTCCATTTGAATTTGACTCAGAAGTTTC 411
> AT4G17490.1 | Symbols: ATERF6, ERF-6-6, ERF6 | ethylene responsive
element binding factor 6 | chr4:9752824-9753867 REVERSE
LENGTH=1044
Length=1044
Score = 340 bits (184), Expect = 1e-92
Identities = 501/646 (78%), Gaps = 54/646 (8%)
Strand=Plus/Plus
Query 439 TTCAATCTCAAATTCGTAAACCGCCATTGAAAATCTCGCTTCC-AGCTAAAACAGAGTGG 497
||||||| | || ||| |||||||| ||||| ||| | | || | | || || |||||
Sbjct 327 TTCAATC-C-AA-TCGAAAACCGCCGTTGAAGATCGCACCACCGAACCGAACCA-AGTGG 382
Query 498 ATCCAATTCGC-ACCTGAAATTACC-AAACCGGAAGTTACTAAACCGGTT-T--CAGAAG 552
|| |||||||| ||| |||| | || ||||||||| || | ||||||| | ||| ||
Sbjct 383 ATTCAATTCGCAACCGGAAA-T-CCTAAACCGGAACTTCCCGTACCGGTTGTAGCAGCAG 440
Query 553 AAGAGAAGAAGCATTACAGAGGAGTGA-GACAAAGACCGTGGGGGAAATTCGCGGCGGAG 611
| ||||||| ||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 441 AGGAGAAGAGGCATTACAGAGGAGTGAGGA-TGAGGCCGTGGGGGAAATTCGCGGCGGAG 499
Query 612 ATTCGTGACCCGAATAAACGCGGATCCCGCGTTTGGCTTGGGACGTTTGATACAGCGATT 671
||||| ||||||| | || ||| | || |||||||| ||||||||||| || |||||
Sbjct 500 ATTCGAGACCCGACTCGTCGTGGAACTCGTGTTTGGCTCGGGACGTTTGAGACGGCGATC 559
Query 672 GAAGCGGCAAGAGCTTATGATGAAGCAGCGTTTAGGCTTCGAGGTTCGAAAG-CGATTTT 730
|||||||| |||||||| || ||| ||||||||| || ||||| || |||| ||||| |
Sbjct 560 GAAGCGGCTAGAGCTTACGACAAAGAAGCGTTTAGACTACGAGGATC-AAAGGCGATTCT 618
Query 731 GAATTTCCCTCTTGAAGTTGGGAAGTGGAAACCACGCGCCGACGAAGGT-GAG------A 783
||||||||| |||||||||| |||||||| |||||||| || || ||| | | |
Sbjct 619 GAATTTCCCGCTTGAAGTTGACAAGTGGAATCCACGCGCTGAAGATGGTCGTGGCCTGTA 678
Query 784 -AG-AAACGGAAGAGAGACAACGATGAAGATGAGAAAGTGACAGTGGTTGAGAAAGTGTT 841
| ||||||||||||||| ||| || || | ||| ||||| ||||||||||||||| |
Sbjct 679 CAACAAACGGAAGAGAGACGGCGAGGAGGA-G-GAA-GTGACGGTGGTTGAGAAAGTGCT 735
Query 842 GAAGACGGAACAGAGCGTT--GACGTTAACGGTGGAGAGACGTTTCCGTTTGTAACGTC- 898
|||||||| |||| || ||||||| ||| || |||| | ||| | | |||
Sbjct 736 AAAGACGGAGGAGAG--TTACGACGTTAGCGGCGGCGAGAA-T----GTT-G-A--GTCA 784
Query 899 GAATTTAACGGAGTTATG-TGACTGGGACTTAACGGGGTTTCTTAACTTTCCGCTTCTGT 957
| ||| |||| | || | ||||||||| || |||| |||||| | | | |||||| | |
Sbjct 785 GG-TTTGACGGCGATA-GATGACTGGGATTTGACGGAGTTTCTGAGCATGCCGCTTTTAT 842
Query 958 CGCCGTTATCTCCTCATCCATCGTTTGGTTATTCTCAGTTGACCGTTGTTTGAttttt-t 1016
||||||||||||| || ||| ||||||||||| | || ||||||||||||||| || | |
Sbjct 843 CGCCGTTATCTCCACACCCACCGTTTGGTTATCCACAATTGACCGTTGTTTGAATTCTAT 902
Query 1017 tttt-tGGTTTTGG-CTA--T-GT-GTATGCTGACGTGGACTTATG 1056
|||| || ||| || | | | || ||||||||||||||| |||||
Sbjct 903 TTTTCTG-TTTGGGTC-AGCTTGTTGTATGCTGACGTGGAATTATG 946
> AT5G47220.1 | Symbols: ATERF2, ATERF-2, ERF2 | ethylene responsive
element binding factor 2 | chr5:19171862-19172823 REVERSE
LENGTH=962
Length=962
Score = 106 bits (57), Expect = 5e-22
Identities = 131/165 (79%), Gaps = 12/165 (7%)
Strand=Plus/Plus
Query 560 GAAGCATTACAGAGGAGTGAGACAAAGACCGTGGGGGAAATTCGCGGCGGAGATTCGTGA 619
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 411 GAAGCATTACAGAGGAGTGAGGCAGAGACCGTGGGGGAAATTCGCGGCGGAGATACGTGA 470
Query 620 -CC--CGAATAAACGCGGATCCCGCGTTTGGCTT-GGGACGTTTGATACAGCG-ATTGAA 674
|| |||| || | | | | | |||||| || ||||||||||| || ||| | ||
Sbjct 471 TCCGGCGAAGAAT-G-G-AGCTAGGGTTTGG-TTAGGGACGTTTGAGACGGCGGAA-GAT 525
Query 675 GCGGCAAGAGCTTATGATGA-AGCAGCGTTTAGGCTTCGAGGTTC 718
||||| |||||| ||| | ||| || |||||| | || |||||
Sbjct 526 GCGGCTTTAGCTTACGAT-ATAGCTGCTTTTAGGATGCGTGGTTC 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57429423480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5