BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494254
Length=830
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47220.1 | Symbols: ATERF2, ATERF-2, ERF2 | ethylene respons... 680 0.0
AT4G17500.1 | Symbols: ATERF-1, ERF-1 | ethylene responsive ele... 316 2e-85
AT2G44840.1 | Symbols: ATERF13, EREBP, ERF13 | ethylene-respons... 119 5e-26
AT4G17490.1 | Symbols: ATERF6, ERF-6-6, ERF6 | ethylene respons... 115 6e-25
> AT5G47220.1 | Symbols: ATERF2, ATERF-2, ERF2 | ethylene responsive
element binding factor 2 | chr5:19171862-19172823 REVERSE
LENGTH=962
Length=962
Score = 680 bits (368), Expect = 0.0
Identities = 492/546 (90%), Gaps = 31/546 (6%)
Strand=Plus/Plus
Query 305 GAAGCATTACAGAGGAGTGAGACAGAGGCCGTGGGGGAAATTCGCGGCGGAGATCCGTGA 364
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 411 GAAGCATTACAGAGGAGTGAGGCAGAGACCGTGGGGGAAATTCGCGGCGGAGATACGTGA 470
Query 365 TCCGGCGAAGAATGGAGCTAGGGTTTGGTTAGGGACGTTTGAGACGGCGGAAGATGCGGC 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TCCGGCGAAGAATGGAGCTAGGGTTTGGTTAGGGACGTTTGAGACGGCGGAAGATGCGGC 530
Query 425 TTTAGCTTACGATAGAGCAGCTTTTAGGATGCGTGGTTCCCGCGCTTTGTTGAATTTTCC 484
|||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 531 TTTAGCTTACGATATAGCTGCTTTTAGGATGCGTGGTTCCCGCGCTTTATTGAATTTTCC 590
Query 485 GTTGAGGGTTAATTCCGGTGAACCTGACCCGGTTCGGATCACGTCTAAGAGAtcttcttc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 GTTGAGGGTTAATTCCGGTGAACCTGACCCGGTTCGGATCACGTCTAAGAGATCTTCTTC 650
Query 545 ttcgtcgtcttcgtcgtcttcgtcgtcttcttcgtcttcgtctGAAAACGGGAAGTTGAA 604
|||||||| |||||||| | || | | || |||| |||||||||||||||||||||||
Sbjct 651 GTCGTCGTCGTCGTCGTC--C-TC-T-T-CTACGTCGTCGTCTGAAAACGGGAAGTTGAA 704
Query 605 ACGGAGGAGAAAAGCAGAGAATCTGACGTCGGAGGTG----A----A-GTGTGAGGTTGG 655
||| ||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 705 ACGAAGGAGAAAAGCAGAGAATCTGACGTCGGAGGTGGTGCAGGTGAAGTGTGAGGTTGG 764
Query 656 TGAAGAGACACGTGTTGATGAGTTATTGGTTTCATAAGTTTTGATTTTGTGTGTTTTGTA 715
||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 765 TGATGAGACACGTGTTGATGAGTTATTGGTTTCATAAGTTT-GATCTTGTGTGTTTTGTA 823
Query 716 GTTGAATAGTTTTGCTATAAATGTTGAGGCG--A-GTAAA-GTGTTTCCCCTGATGTAAA 771
|||||||||||||||||||||||||||||| | ||||| ||||| ||| |||||||||
Sbjct 824 GTTGAATAGTTTTGCTATAAATGTTGAGGCACCAAGTAAAAGTGTT-CCCGTGATGTAAA 882
Query 772 TTACTATA-TAATATCAAA-C-AGAGC-CATC--TCTATAA-CTAAATAGACACTTTAAT 824
||| | || ||| | || | | | | | || || |||| | ||||||||||||||||
Sbjct 883 TTAGT-TACTAA-A-CAGAGCCATATATCTTCAATCCATAAACAAAATAGACACTTTAAT 939
Query 825 AAAGCC 830
||||||
Sbjct 940 AAAGCC 945
Score = 398 bits (215), Expect = 6e-110
Identities = 290/323 (90%), Gaps = 17/323 (5%)
Strand=Plus/Plus
Query 1 TAGTTTCTCTGAAAATGTACGGACAGTGCGATATAGAATCCGACTACGCTTTGTTGGAGT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 56 TAGTTTCTCTGAAAATGTACGGACAGTGCAATATAGAATCCGACTACGCTTTGTTGGAGT 115
Query 61 CGATAACACGTCACTTGCTAGGAGGAGGAG-AGA-A-CGAGCTGCGACTCAATGAGTCGA 117
|||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |
Sbjct 116 CGATAACACGTCACTTGCTAGGAGGAGGAGGAGAGAACGAGCTGCGACTCAATGAGTCAA 175
Query 118 CACCGAGTTCGTGTTTCACAGA---TT-------T--GCCGTTGAAAGAGAATGATTCAG 165
|||||||||||||||||||||| || | ||| |||||||||||||||||||
Sbjct 176 CACCGAGTTCGTGTTTCACAGAGAGTTGGGGAGGTTTGCCATTGAAAGAGAATGATTCAG 235
Query 166 AGGATATGTTAGTCTACGGACTCATCAAAGACGCCTTCCATTGTGACACGTCATCATCAG 225
|||| ||||| || ||||||||| ||||||| |||||||||| ||||||||||||||| |
Sbjct 236 AGGACATGTTGGTGTACGGACTCCTCAAAGATGCCTTCCATTTTGACACGTCATCATCGG 295
Query 226 ACTTGAGCTGTCTTTTTGATTTTCCGGCGGTTAAAGTTGAGCCGACGGAGACCTTTGA-G 284
||||||||||||||||||||||||||||||||||||| ||||| || |||| |||| | |
Sbjct 296 ACTTGAGCTGTCTTTTTGATTTTCCGGCGGTTAAAGTCGAGCCAACTGAGAACTTT-ACG 354
Query 285 GTGGTGGAGGAGAAACCAAAGAA 307
| | |||||||||||||||||||
Sbjct 355 GCGATGGAGGAGAAACCAAAGAA 377
> AT4G17500.1 | Symbols: ATERF-1, ERF-1 | ethylene responsive element
binding factor 1 | chr4:9759325-9760340 FORWARD LENGTH=1016
Length=1016
Score = 316 bits (171), Expect = 2e-85
Identities = 223/249 (90%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 306 AAGCATTACAGAGGAGTGAGACAGAGGCCGTGGGGGAAATTCGCGGCGGAGATCCGTGAT 365
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||| | ||
Sbjct 516 AAGCATTATAGAGGAGTGAGACAAAGGCCGTGGGGGAAATTTGCGGCGGAGATTAGAGAC 575
Query 366 CCGGCGAAGAATGGAGCTAGGGTTTGGTTAGGGACGTTTGAGACGGCGGAAGATGCGGCT 425
||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 576 CCGGCGAAGAACGGAGCTAGGGTTTGGTTAGGAACGTTTGAGACGGCGGAGGACGCGGCG 635
Query 426 TTAGCTTACGATAGAGCAGCTTTTAGGATGCGTGGTTCCCGCGCTTTGTTGAATTTTCCG 485
|| |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 636 TTGGCTTACGACAGAGCTGCTTTCAGGATGCGTGGTTCCCGCGCTTTGTTGAATTTTCCG 695
Query 486 TTGAGGGTTAATTCCGGTGAACCTGACCCGGTTCGGATCACGTCTAAGAGAtcttcttct 545
||||| |||||||| || ||||| ||||||||||| |||| ||| ||||||||||||| |
Sbjct 696 TTGAGAGTTAATTCAGGAGAACCCGACCCGGTTCGAATCAAGTCCAAGAGATCTTCTTTT 755
Query 546 tcgtcgtct 554
|| || |||
Sbjct 756 TCTTCTTCT 764
> AT2G44840.1 | Symbols: ATERF13, EREBP, ERF13 | ethylene-responsive
element binding factor 13 | chr2:18495341-18496272 FORWARD
LENGTH=932
Length=932
Score = 119 bits (64), Expect = 5e-26
Identities = 118/144 (82%), Gaps = 4/144 (3%)
Strand=Plus/Plus
Query 308 GCATTACAGAGGAGTGA-GACAGAGGCCGTGGGGGAAATTCGCGGCGGAGATCCGTGATC 366
||| ||||||||||||| || |||||||||||||||||||||||||||||| | ||||
Sbjct 369 GCAGTACAGAGGAGTGAGGA-GGAGGCCGTGGGGGAAATTCGCGGCGGAGATTAGGGATC 427
Query 367 CGGCGAAGAATGGAGCTAGGGTTTGGTTAGGGACGTTT-GAGACGGCGGAAGATGCGGCT 425
|| |||||| ||||||||||||||| | ||||| || |||||| |||| || |||||
Sbjct 428 CGAAGAAGAACGGAGCTAGGGTTTGGCTCGGGAC-TTACGAGACGCCGGAGGACGCGGCG 486
Query 426 TTAGCTTACGATAGAGCAGCTTTT 449
| || ||||| |||| || |||
Sbjct 487 GTGGCGTACGACCGAGCGGCGTTT 510
> AT4G17490.1 | Symbols: ATERF6, ERF-6-6, ERF6 | ethylene responsive
element binding factor 6 | chr4:9752824-9753867 REVERSE
LENGTH=1044
Length=1044
Score = 115 bits (62), Expect = 6e-25
Identities = 124/153 (81%), Gaps = 8/153 (5%)
Strand=Plus/Plus
Query 303 AAGAAGCATTACAGAGGAGTGA-GACAGAGGCCGTGGGGGAAATTCGCGGCGGAGATCCG 361
|||| ||||||||||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct 446 AAGAGGCATTACAGAGGAGTGAGGA-TGAGGCCGTGGGGGAAATTCGCGGCGGAGATTCG 504
Query 362 TGATCCGGC--GAAGAATGGAGCTAGGGTTTGGTTAGGGACGTTTGAGACGGCGGAA-GA 418
|| ||| | | | |||| || | |||||| | |||||||||||||||||| | ||
Sbjct 505 AGACCCGACTCGTCG--TGGAACTCGTGTTTGGCTCGGGACGTTTGAGACGGCG-ATCGA 561
Query 419 TGCGGCTTTAGCTTACGATAGAGCAGCTTTTAG 451
|||||| ||||||||| | || ||| |||||
Sbjct 562 AGCGGCTAGAGCTTACGACAAAGAAGCGTTTAG 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40438488335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5