BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494257
Length=1546
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47210.1 | Symbols: | Hyaluronan / mRNA binding family | ch... 2052 0.0
> AT5G47210.1 | Symbols: | Hyaluronan / mRNA binding family |
chr5:19169022-19171263 REVERSE LENGTH=1525
Length=1525
Score = 2052 bits (1111), Expect = 0.0
Identities = 1418/1559 (91%), Gaps = 50/1559 (3%)
Strand=Plus/Plus
Query 1 AACTCAGGAAGGGTTTATAGATTAGGTTTTTAAGTCGCACctctctctct--ctGCCGCA 58
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 AACTCAGGAAGGGTTTATAGATTAGGTTTTTAAGTCGCACCTCTCTCTCTCACTGCCGCA 60
Query 59 GCATTTCTTAGGGTTTCTTGTTTCACTATCTCTTAGACACAAACAAAGCACTGTCCGAAT 118
| |||||||||| |||||||||| |||||||||| |||||||| ||| ||||||||||
Sbjct 61 TCTTTTCTTAGGG-TTCTTGTTTCGCTATCTCTTAAACACAAAC--AGCTCTGTCCGAAT 117
Query 119 AATCTCTCTTCGATTACTTC-TTTCT-TGATTCTGTATATCGTCATGGATTACTGA-TTC 175
||||||||||| | ||| || ||| | ||||||||||||||| |||| |||||||| |||
Sbjct 118 AATCTCTCTTCAAGTACCTCTTTTTTCTGATTCTGTATATCGCCATGAATTACTGATTTC 177
Query 176 ACCTCTCTATAAAACCCATCAAAGCAAAGCAATTTCTCCGGTGACTTTGTACCTAACTCG 235
||||||||| ||||||||||||| ||| |||||||||| ||||| ||||||||||||||
Sbjct 178 -CCTCTCTAT-AAACCCATCAAAGTAAACCAATTTCTCCTGTGAC-TTGTACCTAACTCG 234
Query 236 ATCTTTATCAGAGTGGTAATGGCGTCTTTGAACCCTTTCGATCTTTTAGGAGATGACGCT 295
||| ||| |||| |||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 235 ATC-TTACCAGACTGGTGATGGCGTCTTTGAACCCTTTCGATCTTCTAGGAGATGATGCT 293
Query 296 GAGGATCCAAGCCAGCTCGCTGTGGCTTTATCTCAGAAAGTCGAGAAAGCTGCTGCTACT 355
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 294 GAGGATCCAAGCCAGCTCGCTGTGGCTTTGTCTCAGAAAGTCGAGAAAGCTGCTGCTGCT 353
Query 356 GTTCAGCCTGCTAAGGCTGGTAAGTTCCCAACCAAGCCGGCTCCTCCTTCTCAAGCAGTG 415
||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GTTCAGCCTCCTAAGGCCGCTAAGTTCCCAACCAAGCCGGCTCCTCCTTCTCAAGCAGTG 413
Query 416 AGGGAGTCGAGGAATGCTCCTTCAGGAGGAGGTCGTGGTGGTACTGGTGGACGTGGTGGA 475
|||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||
Sbjct 414 AGGGAGTCGAGGAATGCTCC-TCA--AGGAGGTCGTGGTGGGACTGGTGGACGTGGTGGA 470
Query 476 TTTTCCCGTGGAAGGGGTAATGGTGG--A-AACCGGGAGTACCGGAACAATGATGCTCCT 532
||||||||||| |||||||||||||| | |||||||| || |||||||||||||||||
Sbjct 471 TTTTCCCGTGGCAGGGGTAATGGTGGATACAACCGGGACAACAGGAACAATGATGCTCCT 530
Query 533 GGAAATGAGAATGGATTTTCTGGAGGATTC---AGACCTTCTGAAGATGCTGATGGAGCA 589
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 531 GGAAATGAGAATGGATTTTCTGGAGGATACAGGAGACCTTCTGAAGATGCTGATGGAGCA 590
Query 590 AGGCGTGGTGGGTCTGATGGTGGATACCGTCTTGGCGGTAGTCGTGGAGGACCTCGCCGT 649
|| ||||||||||||| ||||||||||||| |||||||| |||||| |||||||||||||
Sbjct 591 AGCCGTGGTGGGTCTGTTGGTGGATACCGTGTTGGCGGTGGTCGTGAAGGACCTCGCCGT 650
Query 650 GGTGGATTTGCCAATGGGGAATCAGGTGATGTTGAACGCCCACGGAGGAATTATGAGCGC 709
|||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||| |||
Sbjct 651 GGTGGAGTTGCCAACGGGGAATCTGGTGATGTTGAACGCCCACCGAGGAATTATGACCGC 710
Query 710 CATAGCGGGACTGGTCGTGGTAATGGCCTAAAACGTGATGGTGGTGGTCGTGGAAACTGG 769
|||||| |||| |||| ||||| |||| | |||||| ||||||| |||||||||||||||
Sbjct 711 CATAGCAGGACAGGTCATGGTACTGGCATGAAACGTAATGGTGGAGGTCGTGGAAACTGG 770
Query 770 GGCACTACTGAAGATGATATCCCTCCAGCGACTGAGGAACCCACCACGGAGGTTGAGAAG 829
||||||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||
Sbjct 771 GGCACTACTGAAGATGATATCCCTCCAACGTCTGAGGAACCTACCACAGAGGTTGAGAAG 830
Query 830 AGCCCTGTTGCTGAGAAGCAAGGAGGTGAGGATGAAACCGCTGAAGCAAACAAAGAGCCC 889
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | |
Sbjct 831 AGCCCTGTTGCTGAGAAGCAAGGAGGTGAGGATGAAACCCCTGAAGCAAAGAAAGAACTC 890
Query 890 ACTGCCGAAGAGAAAGCACAGAAAGAAGCTGAAGAAGCTGAAGCCAGGGAGATGACTCTA 949
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 ACTGCGGAAGAGAAAGCACAGAAAGAAGCTGAAGAAGCTGAAGCCAGGGAGATGACTCTA 950
Query 950 GAAGAGTATGAGAAGATTCTGGAGGAGAAGAAGAAGGCTCTGCAAGCCACAAAGGTTGAG 1009
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 GAAGAGTATGAGAAAATTCTGGAGGAGAAGAAGAAGGCTCTGCAAGCCACAAAGGTTGAG 1010
Query 1010 GAAAGGAAAGTTGACACCAAAGTGTTTGAGTCCATGCAACAGCTCTCTAACAAGAAGAAC 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GAAAGGAAAGTTGACACCAAAGTGTTTGAGTCCATGCAACAGCTCTCTAACAAGAAGAAC 1070
Query 1070 ACCGATGAAGAAATCTTCATCAAGCTGGGATCTGAGAAGGACAAACGCAAAGATGCTGCT 1129
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct 1071 ACCGATGAAGAAATCTTCATCAAGCTGGGATCTGACAAGGAAAAACGCAAAGATGCTACT 1130
Query 1130 GAGAAGACCAAAAAGTCGTTGAGCATTAATGAGTTCTTGAAGCCGGCTGATGGAGAGAGG 1189
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1131 GAGAAGGCCAAAAAGTCGTTGAGCATTAATGAGTTCTTGAAGCCGGCTGATGGAAAGAGG 1190
Query 1190 TACAACGGGAGAGGTGGAAACCGTGGAAGAGGAGGTTGTGGAGGTCGCGGTGGTCGTGAA 1249
|||||||||||||||||| | | | ||| | | | |||||||||||||||||
Sbjct 1191 TACAACGGGAGAGGTGGAGGC--TCCC-GCGGAAGA-G-G-AGGTCGCGGTGGTCGTG-- 1242
Query 1250 CAGAGAGGTGACGGAGGAAACCAAAGGAATGTAAAACCTGCTGCTCCAGCTCCGGCGATT 1309
| || | ||||||||||||||| ||| |||| ||||| |||||||||||||
Sbjct 1243 --GTGA----A-GGAGGAAACCAAAGGTATGCAAAAGAAGCTGC---AGCTCCGGCGATT 1292
Query 1310 GAAGACACAGCTCAGTTCCCTTCGCTGGGCAAGTAAAGAACCCTTCCTGGTCCTTCAGCC 1369
| |||||||||||||||||||||| ||||| |||||||| ||| | |||||||||||||
Sbjct 1293 GGAGACACAGCTCAGTTCCCTTCGTTGGGCTAGTAAAGA-CCC--C-TGGTCCTTCAGCC 1348
Query 1370 TCTCTATCGCTGCCTCTCGTTTCTCTTTGGTTGAATTTTGTTAGCTTTATTATTTTTTGT 1429
|| ||||| ||| || |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1349 TCGCTATCTCTGTCTTTCGTTTCTCTTTGGTTGAATTTTGTTAGTTTTATAATTTTTTGT 1408
Query 1430 TACACTTTCTGAAGGTCCTTTTCTGCGAAACCATTACGTGGGCTTTTTAAGTTATGaaaa 1489
||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||
Sbjct 1409 TACACTTTCTGAAGGTC-TTTTCTGCGAAACTATTACGT----TTTTTAAGTTATGAAAA 1463
Query 1490 aaaTTATTATGATACTT--CTCTCTAATTTTGGTATTACACACTCGATCTTTCTCTTCG 1546
||||||||| |||| || ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1464 AAATTATTAAGATATTTTTCTCTCTAATTTTGGTATTACACATTCGATCTTTCTTTTCG 1522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76304828400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5