BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494258
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47200.1 | Symbols: ATRABD2B, ATRAB1A, RAB1A | RAB GTPase ho... 1434 0.0
AT4G17530.1 | Symbols: RAB1C, ATRAB1C, ATRABD2C | RAB GTPase ho... 773 0.0
AT3G11730.1 | Symbols: ATFP8, ATRABD1, RABD1 | Ras-related smal... 259 3e-68
> AT5G47200.1 | Symbols: ATRABD2B, ATRAB1A, RAB1A | RAB GTPase
homolog 1A | chr5:19166902-19169026 FORWARD LENGTH=1044
Length=1044
Score = 1434 bits (776), Expect = 0.0
Identities = 852/888 (96%), Gaps = 7/888 (1%)
Strand=Plus/Plus
Query 1 AAAAGAACATTCACGTCTCTCTCGttttttttttGCCCGACGACGATCGCTGAATTTATT 60
|||||||||||||||||||||||| |||||||| |||||||||||||||||||| | |
Sbjct 30 AAAAGAACATTCACGTCTCTCTCG---TTTTTTTGGCCGACGACGATCGCTGAATTGACT 86
Query 61 GCCGGAGATTCCTTTAATCGCCAGATTCTCGCCGAGGGATAATGAATCCTGAATATGACT 120
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 87 GCCGGAGATTCCTTTAATCGTCAGATTCTCGTTGAGGGATAATGAATCCTGAATATGACT 146
Query 121 ATCTGTTCAAGCTTCTGCTTATCGGTGATTCTGGTGTTGGAAAATCATGCCTGCTTCTAA 180
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 147 ATCTGTTCAAGCTTCTGCTTATTGGTGATTCTGGTGTTGGAAAATCATGCTTGCTTCTAA 206
Query 181 GATTTGCTGATGATTCTTACCTGGATAGCTACATAAGCACCATTGGTGTTGACTTTAAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 GATTTGCTGATGATTCTTACCTGGATAGCTACATAAGCACCATTGGTGTTGACTTTAAAA 266
Query 241 TCCGCACAGTCGAACAGGACGGAAAGACCATCAAACTCCAGATCTGGGACACAGCAGGCC 300
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 TTCGCACAGTTGAGCAGGACGGAAAGACCATCAAACTCCAGATCTGGGACACAGCAGGCC 326
Query 301 AAGAACGTTTCAGGACAATCACTAGCAGCTACTACAGAGGAGCTCATGGAATCATTGTCA 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 327 AAGAACGTTTCAGGACAATCACTAGCAGCTACTACAGAGGAGCTCATGGGATCATTGTCA 386
Query 361 CTTATGATGTCACTGACCTAGAGAGCTTCAACAACGTCAAACAATGGCTGAATGAAATCG 420
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 387 CTTATGATGTCACAGACCTAGAGAGCTTCAACAACGTCAAACAATGGCTGAATGAAATTG 446
Query 421 ACCGTTACGCTAGCGAAAATGTGAACAAGCTACTGGTTGGAAACAAGAACGATCTCACTT 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 447 ACCGTTACGCTAGCGAAAATGTGAACAAGCTACTGGTTGGGAACAAGAACGATCTCACTT 506
Query 481 CACAGAAAGTTGTATCCACTGAGACAGCTAAGGCTTTTGCAGATGAACTTGGGATCCCAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 CACAGAAAGTTGTATCCACTGAGACAGCTAAGGCTTTTGCAGATGAACTTGGGATCCCAT 566
Query 541 TCTTGGAAACAAGTGCCAAAAATGCAACCAATGTGGAAGAAGCTTTCATGGCTATGACTG 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 TCTTGGAAACAAGTGCTAAAAATGCAACCAATGTGGAAGAAGCTTTCATGGCTATGACTG 626
Query 601 CTGCAATTAAGACAAGAATGGCTAGCCAGCCAGCTGGAGGTGCCAAGCCACCAACGGTCC 660
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 627 CTGCAATTAAGACAAGAATGGCTAGCCAACCAGCTGGAGGTGCCAAGCCACCAACGGTCC 686
Query 661 AGATTCGTGGACAGCCAGTGAACCAGCAATCAGGCTGTTGCTCTTCTTGATTCGATTAGT 720
|||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 687 AGATCCGTGGACAGCCAGTGAACCAGCAATCAGGCTGTTGTTCTTCTTGATTCAATTAGT 746
Query 721 CACCAATTCTCTTTCGATCGTCACACCATTATAATCATTTGTTTGCATTGCATGTAAGAC 780
||||| | ||||||||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct 747 CACCACTCCTCTTTCGATCATCACACCATTATGATCATTTGTTTGCATTGCATGTTAGAC 806
Query 781 TTCTCCAAATTAACAACTCTTTGGATACCCTTTGCTTGTTTTTCATTTG-TTGTCTTTTG 839
|||||||||||||||||||||||||| || ||||||||||||||||||| || |||||||
Sbjct 807 TTCTCCAAATTAACAACTCTTTGGAT-CCTTTTGCTTGTTTTTCATTTGCTT-TCTTTTG 864
Query 840 ATCCAATTCTTTTCTGATGTACTTTTGAAGTTTGAAACGCATAACTTC 887
|||| ||||||||||||||||| || |||||||||||| |||||||||
Sbjct 865 ATCCGATTCTTTTCTGATGTACGTT-GAAGTTTGAAACCCATAACTTC 911
> AT4G17530.1 | Symbols: RAB1C, ATRAB1C, ATRABD2C | RAB GTPase
homolog 1C | chr4:9773548-9775607 REVERSE LENGTH=965
Length=965
Score = 773 bits (418), Expect = 0.0
Identities = 549/614 (89%), Gaps = 2/614 (0%)
Strand=Plus/Plus
Query 102 ATGAATCCTGAATATGACTATCTGTTCAAGCTTCTGCTTATCGGTGATTCTGGTGTTGGA 161
||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||||
Sbjct 184 ATGAATCCTGAATATGACTATTTGTTCAAGCTTTTGCTCATTGGTGATTCTGGTGTTGGA 243
Query 162 AAATCATGCCTGCTTCTAAGATTTGCTGATGATTCTTACCTGGATAGCTACATAAGCACC 221
|| || ||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 244 AAGTCGTGCTTGCTTCTAAGGTTTGCTGATGATTCCTACCTGGATAGCTACATCAGCACC 303
Query 222 ATTGGTGTTGACTTTAAAATCCGCACAGTCGAACAGGACGGAAAGACCATCAAACTCCAG 281
|||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 304 ATTGGTGTCGACTTTAAAATCCGAACAGTCGAACAAGATGGAAAGACCATCAAACTCCAG 363
Query 282 ATCTGGGACACAGCAGGCCAAGAACGTTTCAGGACAATCACTAGCAGCTACTACAGAGGA 341
|| ||||| || |||||||| ||||||||||| || || |||||||| ||||||||||||
Sbjct 364 ATTTGGGATACGGCAGGCCAGGAACGTTTCAGAACGATTACTAGCAGTTACTACAGAGGA 423
Query 342 GCTCATGGAATCATTGTCACTTATGATGTCACTGACCTAGAGAGCTTCAACAACGTCAAA 401
||||||||||| ||||| ||||||||||| || || ||||| |||||||||||||||||
Sbjct 424 GCTCATGGAATTATTGTGACTTATGATGTAACAGATCTAGAAAGCTTCAACAACGTCAAG 483
Query 402 CAATGGCTGAATGAAATCGACCGTTACGCTAGCGAAAATGTGAACAAGCTACTGGTTGGA 461
|||||||| |||||||||||||| || || || || ||||| |||||||||||||||||
Sbjct 484 CAATGGCTAAATGAAATCGACCGCTATGCAAGTGAGAATGTTAACAAGCTACTGGTTGGG 543
Query 462 AACAAGAACGATCTCACTTCACAGAAAGTTGTATCCACTGAGACAGCTAAGGCTTTTGCA 521
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 544 AACAAGTGTGATCTCACATCACAGAAAGTTGTATCCACTGAGACAGCTAAGGCTTTCGCT 603
Query 522 GATGAACTTGGGATCCCATTCTTGGAAACAAGTGCCAAAAATGCAACCAATGTGGAAGAA 581
||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||
Sbjct 604 GATGAACTTGGGATCCCATTCTTGGAAACAAGTGCTAAGAATGCTACCAATGTCGAAGAA 663
Query 582 GCTTTCATGGCTATGACTGCTGCAATTAAGACAAGAATGGCTAGCCAGCCAGCTGGAGG- 640
||||||||||| |||||||||||||| ||||| |||||||| ||||| || || |||||
Sbjct 664 GCTTTCATGGCCATGACTGCTGCAATCAAGACCAGAATGGCGAGCCAACCTGCAGGAGGA 723
Query 641 TGCCAAGCCACCAACGGTCCAGATTCGTGGACAGCCAGTGAACCAGCAATCAGGCTGTTG 700
| | |||||||||||||||||||| || ||||| || || ||||||||||||||||| ||
Sbjct 724 T-CTAAGCCACCAACGGTCCAGATCCGAGGACAACCTGTTAACCAGCAATCAGGCTGCTG 782
Query 701 CTCTTCTTGATTCG 714
||| |||| |||||
Sbjct 783 CTCCTCTTAATTCG 796
> AT3G11730.1 | Symbols: ATFP8, ATRABD1, RABD1 | Ras-related small
GTP-binding family protein | chr3:3709325-3711529 REVERSE
LENGTH=915
Length=915
Score = 259 bits (140), Expect = 3e-68
Identities = 347/447 (78%), Gaps = 14/447 (3%)
Strand=Plus/Plus
Query 120 TATCTGTTCAAGCTTCTGCTT-ATCGGTGA-TTCTGGTGTTGGAAAATCATGCCTGCTTC 177
||||||||||||||| || || |||||||| | || |||||||||||| || || ||||
Sbjct 151 TATCTGTTCAAGCTTTTG-TTGATCGGTGACTCCT-CTGTTGGAAAATCGTGTCTTCTTC 208
Query 178 TAAGATTTGCTGATGATTCTTACCTGGATAGCTACATAAGCACCATTGGTGTTGACTTTA 237
| |||| ||||||||| ||||| | || ||||||||||||||||||||||||||||| |
Sbjct 209 TCCGATTCGCTGATGATGCTTACATTGACAGCTACATAAGCACCATTGGTGTTGACTTCA 268
Query 238 AAATCCGCAC-AGTCGAACAGGACGGAAAGACCATCAAACTCCAGATCTGGGACACAGCA 296
|||| | || | | || ||||| || ||||| || || || || || ||||| || ||
Sbjct 269 AAATTAGGACGATT-GAGCAGGATGGGAAGACGATTAAGCTGCAAATTTGGGATACTGCT 327
Query 297 GGCCAAGAACGTTTCAGGACAATCACTAGCAGCTACTACAGAGGAGCTCATGGAATCATT 356
|| || || ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 328 GGACAGGAGCGTTTCAGGACCATCACTAGCAGCTATTACAGAGGAGCTCATGGAATCATT 387
Query 357 GTCACTTATGA-TGTCACTGACCTAGAGAGCTTCAACAACGTCAAACAATGGCTGAATGA 415
| |||||| ||| ||||| | || ||||||||||| || || || ||| ||| |||
Sbjct 388 ATTGTTTATGACTGT-ACTGAGATGGAAAGCTTCAACAATGTGAAGCAGTGGTTGAGTGA 446
Query 416 AATCGACCGTTACGCTAGCGAAAATGTGAACAAGCTACTGGTTGGAAACAAGAACGATCT 475
||||| | || || | || | ||| |||||| | | || |||||||| ||| |
Sbjct 447 GATCGATAGATATGCCAATGAGAGTGTTTGCAAGCTTTTAATCGGTAACAAGAATGATAT 506
Query 476 CACTTCACAG-AAAGTTGTATCCACTGAGACAGCTAAGG-CTTTTGCAGATGAACTTGGG 533
|| | || |||||||| ||||| || || | |||| | || |||||||| |||||
Sbjct 507 GG-TTGAAAGCAAAGTTGTTTCCACCGAAACTGG-AAGGGCCTTAGCAGATGAGCTTGGA 564
Query 534 AT-CCCATTCTTGGAAACAAGTGCCAA 559
|| ||| |||||| | || ||||||||
Sbjct 565 ATTCCCTTTCTTG-AGACCAGTGCCAA 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43301834714
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5