BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494260
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47180.1 | Symbols: | Plant VAMP (vesicle-associated membra... 1500 0.0
> AT5G47180.1 | Symbols: | Plant VAMP (vesicle-associated membrane
protein) family protein | chr5:19161142-19163432 REVERSE
LENGTH=1072
Length=1072
Score = 1500 bits (812), Expect = 0.0
Identities = 885/919 (96%), Gaps = 9/919 (1%)
Strand=Plus/Plus
Query 287 TTTGAGC-aa-aaaaaaaaaaGATGACTGGCGTTGGCGAGAATCAGCTTATCTCCATTCA 344
||| ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 146 TTTAAGCAAACAAAAAAAAAAGATGACCGGCGTTGGCGAGAATCAGCTTATCTCCATTCA 205
Query 345 ACCTGATGAACTCAAATTTCTCTTTGAACTCGAGAAACAAAGCTACTGTGATCTTAAAGT 404
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 206 ACCTGATGAACTCAAATTTCTCTTTGAACTTGAGAAGCAAAGCTACTGTGATCTTAAAGT 265
Query 405 TGCCAATAAAACAGAGCACTATGTTGCTTTCAAGGTGAAAACAACATCTCCAAAGAAGTA 464
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 TGCCAATAAAACAGAGAACTATGTTGCTTTCAAGGTGAAAACAACATCTCCAAAGAAGTA 325
Query 465 TTTTGTAAGACCTAACACTGGTGTCATTCAGCCATGGGACTCTTGCATCATTAGAGTTAC 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 TTTTGTAAGACCTAACACTGGTGTCATTCAGCCATGGGACTCTTGCATCATTAGAGTTAC 385
Query 525 TCTTCAAGCGCAACGGGAGTATCCTCCAGATATGCAGTGCAAAGACAAATTTCTTCTGCA 584
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 386 TCTACAAGCGCAACGAGAGTATCCTCCAGATATGCAGTGCAAAGACAAATTTCTCCTGCA 445
Query 585 AAGTACCATTGTACCTCCACACACTGATGTGGATGAACTTCCACAAGACACTTTCACCAA 644
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 446 AAGTACCATTGTACCTCCACACACTGATGTGGATGAACTTCCTCAAGACACTTTCACCAA 505
Query 645 GGACAGTGGAAAGACATTAACAGAATGTAAGCTCAAAGTCTCTTATATTTCCCCGTCTAC 704
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 506 GGACAGTGGAAAGACATTAACAGAATGTAAGCTCAAAGTCTCTTATATTACCCCGTCTAC 565
Query 705 AACCCAAAGATCCTCTGAATCCGGAGCAACAAATGGTGATGGACAAAGCTCGGAAACCAT 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 AACCCAAAGATCCTCTGAATCCGGAGCAACAAATGGTGATGGACAAAGCTCGGAAACCAT 625
Query 765 CTCTACTATACAGCGGCTGAAGGAAGAGCGAGATGCAGCCGTTAAGCAAACACAACAGCT 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 CTCTACTATACAGCGGCTGAAGGAAGAGCGAGATGCAGCCGTTAAGCAAACACAACAGCT 685
Query 825 GCAACATGAATTGGAAACGGTGAGGAGGCGGAGAAACCAGAGGAACAGCGGAAATGGGCT 884
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 686 GCAACATGAATTGGAAACGGTAAGGAGGCGGAGAAACCAGAGGAACAGCGGAAATGGGCT 745
Query 885 ATCCTTGAAGTTGGCAGCTATGGTTGGACTCATCGGACTCATCATCGGTTTCATCCTAAA 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 ATCCTTGAAGTTGGCAGCTATGGTTGGACTCATCGGACTCATCATCGGTTTCATCCTAAA 805
Query 945 ACTCACCTTAGCTTCTCCCACATAACAACTCTTGAGCTTCTCCGCATCGCCTACCATCTC 1004
||| |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct 806 ACTTACCTTAGCTTCTCCCACATAACAACTCTTGAGCTTCAACACATCGCCTATCATCTC 865
Query 1005 AGTATATGTAACTGCGGAATCAAAACAGATTCACATATATTTTCGGGTATTTTAA-TCTT 1063
| |||||||||| || |||||||||||||||||||||| ||| |||||||||||| ||||
Sbjct 866 AATATATGTAACAGCCGAATCAAAACAGATTCACATAT-TTT-CGGGTATTTTAAATCTT 923
Query 1064 CTAAATTTGGGCTTATTTCTATCCCTCTCTTTCTTTCTCCTTAATGTTCTACACGTTTCT 1123
||||||||||| |||||| |||||||||||||||||||||| ||||||| ||||||||||
Sbjct 924 CTAAATTTGGG-TTATTTATATCCCTCTCTTTCTTTCTCCT-AATGTTCCACACGTTTCT 981
Query 1124 TCCATCAAATTTTCTTCTTTTT--CAGTTATATTTTATGTACATTTTTGACCCAACAGAC 1181
|||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||
Sbjct 982 TCCATCAAATTTTCTTCTTTTTTTCAGTTATAAATTATGTACATTTTTGACCCAAGAGAC 1041
Query 1182 CCTTTCATCATTGGATTTA 1200
|||||||||||||| ||||
Sbjct 1042 CCTTTCATCATTGGTTTTA 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5