BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494262 Length=401 Score E Sequences producing significant alignments: (Bits) Value AT5G47170.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 464 3e-130 AT1G01130.1 | Symbols: | CONTAINS InterPro DOMAIN/s: CBL-inter... 235 2e-61 > AT5G47170.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19158508-19158960 REVERSE LENGTH=453 Length=453 Score = 464 bits (251), Expect = 3e-130 Identities = 356/403 (88%), Gaps = 22/403 (5%) Strand=Plus/Plus Query 1 ATGGAGAAACGTTCAGATACAGAGAGTTCAGAGATTTTGGGCGATTGGGATTTGTCTCCT 60 |||||||||||||||||||||||||||||||||||||| | |||||| |||| |||||| Sbjct 1 ATGGAGAAACGTTCAGATACAGAGAGTTCAGAGATTTTAGAAGATTGGCATTTATCTCCT 60 Query 61 CCTCCGGTGAATCCGGAAGAACGAATCGTATTGGTTTCTGTTCCCACTTCACCAGAATCT 120 | || ||||||||||||||| |||||||| ||||||||||||||||||||||||| ||| Sbjct 61 -C-CC-GTGAATCCGGAAGAAGGAATCGTAATGGTTTCTGTTCCCACTTCACCAGAGTCT 117 Query 121 GAAGATGCGAGATCGAATCAACCGAAAGAGATTGAAACTAGGGTTTCAGACAAAGAAA-T 179 || |||||||||| ||||| ||| ||||||||||||||||||||||| ||| |||||| | Sbjct 118 GACGATGCGAGATTGAATCCACCAAAAGAGATTGAAACTAGGGTTTCGGAC-AAGAAATT 176 Query 180 AGCTTCGACATCAACTGTCGCTGGAAAAGCAGCGGCGGCGAGGAGAGTATTGCCGCCGTG 239 || ||| |||||||| ||||| || ||||| || ||||||||||| ||||||||||| Sbjct 177 AGGTTCCACATCAACAGTCGCCGGTGAAGCA---GCAGCGAGGAGAGTGTTGCCGCCGTG 233 Query 240 GATGGAGCCGTCATATGAATGGGGTGGTGGGAAATGgaaagaagatggaagaaagaagaa 299 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 234 GATGGAGCCGTCGTACGAATGGGGTGGTGGGAAATGGAAAGAAGATGGAAGAAAGAAGAA 293 Query 300 gaaagagaaagagaaagagaaagagaaagaagagaTTATTCCTTTTAAAGAAATCATTGA 359 |||||||||||||||||| | |||| |||| |||||||||||||||||||| Sbjct 294 GAAAGAGAAAGAGAAAGA-A--GAGA---------TTATACCTTTTAAAGAAATCATTGA 341 Query 360 AGCTCTGCTTCGGAACTCCGGTGACAAGGTTGAAG-AAGACAA 401 |||||||||||| |||||||||||||||||| ||| ||||||| Sbjct 342 AGCTCTGCTTCGAAACTCCGGTGACAAGGTT-AAGGAAGACAA 383 > AT1G01130.1 | Symbols: | CONTAINS InterPro DOMAIN/s: CBL-interacting protein kinase (InterPro:IPR020660), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1); Has 176 Blast hits to 176 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:61905-63811 REVERSE LENGTH=375 Length=375 Score = 235 bits (127), Expect = 2e-61 Identities = 234/281 (83%), Gaps = 26/281 (9%) Strand=Plus/Plus Query 1 ATGGAGAAACGTTCAGATACAGAGAGT-TCAGAGATTTTGGGCGATTGGGATTTGTCTCC 59 |||||||||||||||||| |||||||| | |||||||||||| |||||||| | || || Sbjct 1 ATGGAGAAACGTTCAGATTCAGAGAGTGT-AGAGATTTTGGGTGATTGGGA--T-TCACC 56 Query 60 TCCTCCGGTGAATCCGGAAGAACGAATCGTATTGGTTTCTGTTCCCACTTCACCAGAATC 119 |||||| | ||| | | || |||||||| |||||||||||||||||||||||||||| Sbjct 57 TCCTCC-G-GAA----G-A-AA-GAATCGTAATGGTTTCTGTTCCCACTTCACCAGAATC 107 Query 120 TGAAGATGCGAGATCGAATCAACCGAAAGAGATTGAAACTAGGGTTTCAGACAAAGAAAT 179 ||| | |||||||||||||||||||||||||| ||| |||||||||||||||| |||| Sbjct 108 TGATTACGCGAGATCGAATCAACCGAAAGAGATCGAATCTAGGGTTTCAGACAAGGAAAC 167 Query 180 AGCTTCGACATCAACTGTCGCTGGAAAAGCAGCGGCGGCGAGGAGAGTATTGCCGCCGTG 239 ||| ||| |||| | | | | || | | | | |||||||| || ||||||||||| Sbjct 168 AGCGTCGGCATC--C-G--GA-G-AA--GT-G-G-CTGCGAGGAGGGTGTTGCCGCCGTG 215 Query 240 GATGGAGCCGTCATATGAATGGGGTGGTGGGAAATGgaaag 280 |||||| ||||| ||||||||||||||||| |||||||||| Sbjct 216 GATGGATCCGTCGTATGAATGGGGTGGTGGCAAATGGAAAG 256 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18950941373 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5