BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494262

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G47170.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   464    3e-130
  AT1G01130.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: CBL-inter...   235    2e-61 


> AT5G47170.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G01130.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:19158508-19158960 REVERSE LENGTH=453
Length=453

 Score =  464 bits (251),  Expect = 3e-130
 Identities = 356/403 (88%), Gaps = 22/403 (5%)
 Strand=Plus/Plus

Query  1    ATGGAGAAACGTTCAGATACAGAGAGTTCAGAGATTTTGGGCGATTGGGATTTGTCTCCT  60
            |||||||||||||||||||||||||||||||||||||| |  |||||| |||| ||||||
Sbjct  1    ATGGAGAAACGTTCAGATACAGAGAGTTCAGAGATTTTAGAAGATTGGCATTTATCTCCT  60

Query  61   CCTCCGGTGAATCCGGAAGAACGAATCGTATTGGTTTCTGTTCCCACTTCACCAGAATCT  120
             | || ||||||||||||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct  61   -C-CC-GTGAATCCGGAAGAAGGAATCGTAATGGTTTCTGTTCCCACTTCACCAGAGTCT  117

Query  121  GAAGATGCGAGATCGAATCAACCGAAAGAGATTGAAACTAGGGTTTCAGACAAAGAAA-T  179
            || |||||||||| ||||| ||| ||||||||||||||||||||||| ||| |||||| |
Sbjct  118  GACGATGCGAGATTGAATCCACCAAAAGAGATTGAAACTAGGGTTTCGGAC-AAGAAATT  176

Query  180  AGCTTCGACATCAACTGTCGCTGGAAAAGCAGCGGCGGCGAGGAGAGTATTGCCGCCGTG  239
            || ||| |||||||| ||||| ||  |||||   || ||||||||||| |||||||||||
Sbjct  177  AGGTTCCACATCAACAGTCGCCGGTGAAGCA---GCAGCGAGGAGAGTGTTGCCGCCGTG  233

Query  240  GATGGAGCCGTCATATGAATGGGGTGGTGGGAAATGgaaagaagatggaagaaagaagaa  299
            |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  234  GATGGAGCCGTCGTACGAATGGGGTGGTGGGAAATGGAAAGAAGATGGAAGAAAGAAGAA  293

Query  300  gaaagagaaagagaaagagaaagagaaagaagagaTTATTCCTTTTAAAGAAATCATTGA  359
            |||||||||||||||||| |  ||||         |||| ||||||||||||||||||||
Sbjct  294  GAAAGAGAAAGAGAAAGA-A--GAGA---------TTATACCTTTTAAAGAAATCATTGA  341

Query  360  AGCTCTGCTTCGGAACTCCGGTGACAAGGTTGAAG-AAGACAA  401
            |||||||||||| |||||||||||||||||| ||| |||||||
Sbjct  342  AGCTCTGCTTCGAAACTCCGGTGACAAGGTT-AAGGAAGACAA  383


> AT1G01130.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: CBL-interacting 
protein kinase (InterPro:IPR020660), Calcium/calmodulin-dependent 
protein kinase-like (InterPro:IPR020636); BEST 
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1); 
Has 176 Blast hits to 176 proteins in 20 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants 
- 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
| chr1:61905-63811 REVERSE LENGTH=375
Length=375

 Score =  235 bits (127),  Expect = 2e-61
 Identities = 234/281 (83%), Gaps = 26/281 (9%)
 Strand=Plus/Plus

Query  1    ATGGAGAAACGTTCAGATACAGAGAGT-TCAGAGATTTTGGGCGATTGGGATTTGTCTCC  59
            |||||||||||||||||| |||||||| | |||||||||||| ||||||||  | || ||
Sbjct  1    ATGGAGAAACGTTCAGATTCAGAGAGTGT-AGAGATTTTGGGTGATTGGGA--T-TCACC  56

Query  60   TCCTCCGGTGAATCCGGAAGAACGAATCGTATTGGTTTCTGTTCCCACTTCACCAGAATC  119
            |||||| | |||    | | || |||||||| ||||||||||||||||||||||||||||
Sbjct  57   TCCTCC-G-GAA----G-A-AA-GAATCGTAATGGTTTCTGTTCCCACTTCACCAGAATC  107

Query  120  TGAAGATGCGAGATCGAATCAACCGAAAGAGATTGAAACTAGGGTTTCAGACAAAGAAAT  179
            |||  | |||||||||||||||||||||||||| ||| |||||||||||||||| |||| 
Sbjct  108  TGATTACGCGAGATCGAATCAACCGAAAGAGATCGAATCTAGGGTTTCAGACAAGGAAAC  167

Query  180  AGCTTCGACATCAACTGTCGCTGGAAAAGCAGCGGCGGCGAGGAGAGTATTGCCGCCGTG  239
            ||| ||| ||||  | |  |  | ||  |  | | | |||||||| || |||||||||||
Sbjct  168  AGCGTCGGCATC--C-G--GA-G-AA--GT-G-G-CTGCGAGGAGGGTGTTGCCGCCGTG  215

Query  240  GATGGAGCCGTCATATGAATGGGGTGGTGGGAAATGgaaag  280
            |||||| ||||| ||||||||||||||||| ||||||||||
Sbjct  216  GATGGATCCGTCGTATGAATGGGGTGGTGGCAAATGGAAAG  256



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18950941373


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5