BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494263
Length=998
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47160.1 | Symbols: | YDG/SRA domain-containing protein | c... 957 0.0
> AT5G47160.1 | Symbols: | YDG/SRA domain-containing protein |
chr5:19156731-19157978 FORWARD LENGTH=1248
Length=1248
Score = 957 bits (518), Expect = 0.0
Identities = 635/692 (92%), Gaps = 5/692 (1%)
Strand=Plus/Plus
Query 308 CTGGAGTTCTCTCGGATATACAACGAAACCGGCTTTCTAAAGATCTTAGCCCACGAGAGA 367
||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||| |||
Sbjct 560 CTGGAGTCCTCTCGGTTATACAACGAAACCGGCTTTCGAAAGATCTTACCCCACGCCAGA 619
Query 368 AAGTTCAAGAGGTGTTGCGTGTTTTCAAACTTGTGTTTGATGAGCTAGATCGTAACAAGG 427
| |||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 620 AGGTTCAAGAAGTGTTGCGTATTTTCACACTTGTGTTTGATGAGCTAGATCGTAACAAGG 679
Query 428 CAGCACGGCGAGGTGAATCAGAGACTGCCAAGAGTAGGATAGATTACCAAACTCGGAATA 487
||||| | |||||| |||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 680 CAGCAAGAAGAGGTGGATCAGAGACTGCCAAGAGCAGGATAGATTACCAAACTTGGACTA 739
Query 488 TTCTGAGGGAAATGGGGATGCAAGTGAACTGTCATAAGAGGATTGGACCAGTCCCCGGAA 547
||||||||||||||||||||||||| |||| ||| |||||||||||| |||||||||| |
Sbjct 740 TTCTGAGGGAAATGGGGATGCAAGTTAACTCTCAAAAGAGGATTGGATCAGTCCCCGGGA 799
Query 548 TCGAGGTTGGAGATGAAATTCAGTTCAAAGCAGCACTCAATGTAATCGGTCTTCACTTTG 607
|| ||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 800 TCAAGGTTGGAGATAAAATTCAGTTCAAAGCAGCACTCAGTGTAATCGGTCTTCATTTTG 859
Query 608 ACATCATGGGTGGGATAGATTACATGAAGAAAGGAAACAAGGAAGTAGCTACGAGCATTG 667
||||||| ||||||| || |||||| | ||||||||||||||||||||||| |||||||
Sbjct 860 GCATCATGAGTGGGATTGACTACATGTATAAAGGAAACAAGGAAGTAGCTACAAGCATTG 919
Query 668 TTTCATCTGAAGGTAATGATTACGGCGATAGATTCATCAACGATGTGATGATCTATTGTG 727
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 920 TTTCATCAGAAGGTAATGATTACGGGGATAGATTCATCAACGATGTGATGATCTATTGTG 979
Query 728 GTCAAGGAGGTAATGTGAAGAGCAAGGATCAAAAAGCAATCAAAGATCAGAAGCTTGTTG 787
|||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 980 GTCAAGGAGGTAATATGAGGAGCAAGGATCATAAAGCAATCAAAGATCAGAAGCTTGTTG 1039
Query 788 GAGGCAATTTGGCTTTAGCTAATAGCATTAAGGAAAAGACTCCGGTACGAGTGATCCGCG 847
| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1040 GTGGAAATTTGGCTTTAGCTAATAGCATTAAGGAAAAGACTCCGGTGCGAGTGATCCGTG 1099
Query 848 GCGAAAGGA-GATTGGACCATAGAGGAAAGGATTATGTGTATGATGGTTTATACATGGTG 906
||||||| | |||||||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 1100 GCGAAAG-ACGATTGGACAACAGAGGAAAGGATTATGTGTATGATGGTTTATACAGGGTG 1158
Query 907 GAGAAGTATAGGAAAGAGAGAGGCCCTCAAGGTAACATTTTGTTCAAGTTTGAGCTTAGA 966
||||||||| || ||||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct 1159 GAGAAGTATTGGGAAGAGAGGGGACCTCAAGGTAACATTTTGTTCAAGTTTAAGCTTAGA 1218
Query 967 AGAAAAGCTGGTCAACCTTATGTTGACTTTTG 998
|||| || ||||||||||||| ||||||||
Sbjct 1219 AGAA---CTTGTCAACCTTATGTGGACTTTTG 1247
Score = 399 bits (216), Expect = 2e-110
Identities = 281/311 (90%), Gaps = 9/311 (3%)
Strand=Plus/Plus
Query 1 GAATCGTTTGATTCGATTATGAAGAAAGCTGGCTTTAATGTAGCAGGTAATGGTAATGTT 60
||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||
Sbjct 199 GAATCGTTTGATTCGATAATGAAGAAAGCTGGCTTTAATGTAGC---TAATGGTAATCTT 255
Query 61 GGGAATGAAAAATTTCCTCCATCTAGGAGGAAAGTTCCTTTACTTTGTGAAAGTAAAGTG 120
||||||| ||| ||||||||||||| |||||| |||||||||| ||||||| ||||||||
Sbjct 256 GGGAATGGAAAGTTTCCTCCATCTAAGAGGAATGTTCCTTTACCTTGTGAAGGTAAAGTG 315
Query 121 AAACCTCTAAGTGTGGAGGAAGGTATTAAACTAATGGGTTCTGAAAGCCAAAGAAGACGT 180
||||||| || ||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 316 CAACCTCTTAGCGTGGAGGAAGGTATTAAACTAATGGCTTATGAAAGCCAAAGAAGACGT 375
Query 181 CGTTTTGGTAAGCCTTTGGTAT---CCAAAGCTGTGCAGAAACGTAGATGCTCACCGGCG 237
||||||||||||||||||||| |||||| ||||||||||| ||||| |||||| |||
Sbjct 376 TGTTTTGGTAAGCCTTTGGTATCAACCAAAGTTGTGCAGAAACATAGATACTCACCTGCG 435
Query 238 AAGAAGAAGTTGAGTAATGCAACTGCGTTAAGAGTAAGATACTCACCGGGGAAGAAGAAG 297
||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||
Sbjct 436 AAGAAGAAGTTGAGTAATGCAACTGCGTTAAGAGTAAGACACTCACCG---ATGAAGAAG 492
Query 298 TTGAGTTATGC 308
|||||| ||||
Sbjct 493 TTGAGTAATGC 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48877825031
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5