BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494266
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47120.1 | Symbols: ATBI-1, BI-1, ATBI1, BI1 | BAX inhibitor... 1269 0.0
AT4G17580.1 | Symbols: | Bax inhibitor-1 family protein | chr4... 307 1e-82
> AT5G47120.1 | Symbols: ATBI-1, BI-1, ATBI1, BI1 | BAX inhibitor
1 | chr5:19136023-19137942 FORWARD LENGTH=1149
Length=1149
Score = 1269 bits (687), Expect = 0.0
Identities = 792/843 (94%), Gaps = 5/843 (1%)
Strand=Plus/Plus
Query 1 AATATCTTCGTTAATCGATTCTCAAAGTCAAGCaaaaaaaaaaaaCGAAACAATGGATGC 60
||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 AATATTTTCATTAATCGATTCTCAAAGTCAAGC----AAAAAAAACGAAACAATGGATGC 56
Query 61 GTTCTCTTCCTTCTTCGATTCTCAACCTGGTAGCAGAAGCTGGAGCTATGATTCTCTTAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 GTTCTCTTCCTTCTTCGATTCTCAACCTGGTAGCAGAAGCTGGAGCTATGATTCTCTTAA 116
Query 121 AAACTTCCGTCAGATTTCTCCCGCCGTTCAGAATCATCTTAAACGGGTTTATCTCACGTT 180
||||||||||||||||||||| |||||||||||||||||||||||||||||| | || ||
Sbjct 117 AAACTTCCGTCAGATTTCTCCAGCCGTTCAGAATCATCTTAAACGGGTTTATTTGACCTT 176
Query 181 ATGCTGTGCTCTTGTTGCATCTGCGTTTGGAGCTTATCTTCATGTGCTCTGGAATATTGG 240
||| ||||||||||| || ||||| ||||||||||| || ||||||||||||||||| ||
Sbjct 177 ATGTTGTGCTCTTGTGGCGTCTGCCTTTGGAGCTTACCTCCATGTGCTCTGGAATATCGG 236
Query 241 CGGTATTCTTACAACGATTGGATGCGTTGGAACTATGATTTGGCTCCTTTCTTGTCCTCC 300
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 237 CGGTATTCTTACAACGATTGGATGTATTGGAACTATGATTTGGCTCCTTTCATGTCCTCC 296
Query 301 TTATGAACAACAAAAGAGACTTTCTCTTCTGTTTGTGTCTGCTGTTCTTGAAGGTGCTTC 360
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTATGAACACCAAAAAAGGCTTTCTCTTCTGTTTGTGTCTGCTGTTCTTGAAGGTGCTTC 356
Query 361 TGTTGGGCCCTTGATCAAAGTGGCAATTGATGTTGACCCAAGCATCCTTATTACTGCATT 420
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 357 TGTTGGCCCCTTGATCAAAGTGGCAATTGATGTTGACCCAAGCATCCTTATCACTGCATT 416
Query 421 TGTTGGAACTGCAATAGCGTTTGTCTGTTTCTCGGCTGCAGCAATGTTAGCAAGACGCAG 480
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 417 TGTTGGAACTGCGATAGCGTTTGTCTGTTTCTCAGCAGCAGCAATGTTAGCAAGACGCAG 476
Query 481 GGAGTATCTCTACCTTGGAGGACTACTTTCATCTGGCTTGTCCATGCTAATGTGGCTTCA 540
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 477 GGAGTATCTCTACCTTGGAGGACTGCTTTCATCTGGCTTGTCTATGCTAATGTGGCTCCA 536
Query 541 GTTTGCCTCTTCGATCTTTGGTGGCTCTGCATCTATCTTTAAGTTTGAGTTGTACTTTGG 600
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTTTGCCTCTTCAATCTTTGGTGGCTCTGCATCTATCTTTAAGTTTGAGTTGTACTTTGG 596
Query 601 ACTCTTGATCTTTGTGGGATACATGGTGGTGGATACACAGGAGATTATAGAGAAGGCACA 660
||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 597 ACTTTTGATCTTTGTGGGATACATGGTGGTGGACACACAAGAGATTATAGAAAAGGCACA 656
Query 661 CCTCGGCGACATGGACTACGTGAAACATTCATTGACCCTTTTCACCGACTTTGTAGCTGT 720
|||||| ||||||||||| || |||||||| |||||||||||||| ||||||||||||||
Sbjct 657 CCTCGGTGACATGGACTATGTAAAACATTCGTTGACCCTTTTCACTGACTTTGTAGCTGT 716
Query 721 GTTCGTTCGGATTCTCATCATAATGTTGAAGAACTCGGCAGATaaagaagagaagaagaa 780
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 717 GTTTGTTCGGATTCTCATCATAATGTTGAAGAACTCAGCAGATAAAGAAGAGAAGAAGAA 776
Query 781 gaaaaggagaaaCTGAGGCGATGTAA-GTAGATAGAACTTTATGGTGGTCATCGTGTTTG 839
|||||||||||||||||| ||||||| ||| || ||||||||||| || ||||||| ||
Sbjct 777 GAAAAGGAGAAACTGAGGGGATGTAAAGTAAATTTAACTTTATGGTTGTTATCGTGTGTG 836
Query 840 GCC 842
|||
Sbjct 837 GCC 839
Score = 187 bits (101), Expect = 2e-46
Identities = 130/144 (90%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 843 TTTCCACTAAAAAGGATTTGCTTGTTCCTCTTCTGCACAAATATCACCTTCAGATTGTAA 902
||||||||||||||||| |||||||| | ||||||||||| || || |||||||||||||
Sbjct 888 TTTCCACTAAAAAGGATCTGCTTGTTTCACTTCTGCACAAGTACCATCTTCAGATTGTAA 947
Query 903 ATGACTCGAGTGTTGTTGTTCTTTTC-TAAACTTT-GTTGTTTAAGAGTTTGGTACTACT 960
||||||||||||||||| |||||||| |||||||| ||| |||||||||||||| |||||
Sbjct 948 ATGACTCGAGTGTTGTTCTTCTTTTCATAAACTTTTGTTCTTTAAGAGTTTGGTTCTACT 1007
Query 961 AATTTCATCTTATCAAGCTAAGAA 984
||| ||||||| |||||||||||
Sbjct 1008 GATTGCATCTTACCAAGCTAAGAA 1031
> AT4G17580.1 | Symbols: | Bax inhibitor-1 family protein | chr4:9789789-9791145
REVERSE LENGTH=744
Length=744
Score = 307 bits (166), Expect = 1e-82
Identities = 434/559 (78%), Gaps = 36/559 (6%)
Strand=Plus/Plus
Query 170 TATCTCACGTTATGCTGTGCTCTTGTTGCATCTGCGTTTGGAGCTTATC-TTCATGTGCT 228
||||||||||||| || ||||||| |||| |||||| |||||||||| | |||| || |
Sbjct 130 TATCTCACGTTATTCTTTGCTCTTCTTGCGTCTGCGATTGGAGCTTA-CATTCACATGGT 188
Query 229 CTGGAATATTGGCGGTATTCTTACAACGATTGGATGC-GTTGGAACT-ATGATTTGGCTC 286
||||||||| || || | | | | || |||||| | | ||||| | |||||||||
Sbjct 189 CTGGAATATCGGTGGAAATGTCAGTACTCTTGGATTCAG-TGGAA-TCATGATTTGG--- 243
Query 287 CTTTC-TTGTC-CTCCTTATGAACAACAAAAGA-GACT-TTCTCTTCTGTTTGTGTCTGC 342
|| | || || ||| |||||||| | || | | || | | ||||||||| | | |||
Sbjct 244 -TTGCGTT-TCACTCTTTATGAAC--C-TAACATG-CTCTAC-CTTCTGTTTCTATTTGC 296
Query 343 TGTTCTTGAAGGTGCTTCTGTTGGGCCCTTGATCAAAG-T-GGCAATTGATGTTGACCCA 400
||||| |||||||||| ||||| ||| ||||| | | | | | |||||| ||||| ||
Sbjct 297 CCTTCTTAAAGGTGCTTCAGTTGGTCCCATGATC-ATGCTAGTC-ATTGATTTTGACTCA 354
Query 401 AGCATCCTTATTACTGCATTTGTTGGAACTGCAATAGCGTTTGTCTGTTTCTCGGCTGCA 460
||| |||| | ||||||||||| ||||| ||| |||| ||||| |||||||| ||||||
Sbjct 355 AGCGTCCTGGTCACTGCATTTGTGGGAACAGCAGTAGCATTTGTGTGTTTCTCCGCTGCA 414
Query 461 GCAATGTTAGCAA-GACGCAGGGAGTATCTCTACCTTGGAGGAC-T-ACTTTCATCTGGC 517
|||||||| |||| | || || ||||| || |||| ||| | | | |||| | | | |
Sbjct 415 GCAATGTTGGCAACG-CGTAGAGAGTACCTTTACCACGGA-G-CTTCACTTGCTTGTTG- 470
Query 518 T-TGTCCATGCTAAT-GTGGCTTCAGTTTGCCTCTTCGATCTTTGGTGGCTCTGCATCTA 575
| ||||||| || | |||| | || |||||||||| ||||| || |||||| || ||
Sbjct 471 TATGTCCATCCT-TTGGTGGGTACAAATTGCCTCTTCCATCTTCGGAGGCTCTACAACTG 529
Query 576 TCTTTAAGTTTGAGTTGTACTTTGGACTCTTGATCTTTGTGGGATACATGGTGGTGGATA 635
|| | ||||||||| | |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 530 TCGTCAAGTTTGAGCTATACTTTGGACTCTTGATCTTTGTGGGATACATAGTGGTGGACA 589
Query 636 CACAGGA-GATTATAGAGAAGGCACACCTCGGCGACATGGACTACGTGAAACATTCATTG 694
||||| | ||| | ||||| ||||||| ||| || |||||||| ||| ||||||| ||
Sbjct 590 CACAG-ATGATAACCGAGAAAGCACACCACGGTGATATGGACTATGTGCAACATTCTTTT 648
Query 695 ACCCTTTTCACCGACTTTG 713
||| ||||||| |||||||
Sbjct 649 ACCTTTTTCACTGACTTTG 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5