BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494272
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47080.1 | Symbols: CKB1 | casein kinase II beta chain 1 | ... 1659 0.0
AT4G17640.1 | Symbols: CKB2 | casein kinase II beta chain 2 | ... 697 0.0
AT2G44680.1 | Symbols: CKB4 | casein kinase II beta subunit 4 ... 366 2e-100
> AT5G47080.1 | Symbols: CKB1 | casein kinase II beta chain 1
| chr5:19124612-19126562 REVERSE LENGTH=1386
Length=1386
Score = 1659 bits (898), Expect = 0.0
Identities = 1141/1249 (91%), Gaps = 53/1249 (4%)
Strand=Plus/Plus
Query 19 AAGCAAAACCCTAGAGCTCAAGCTAATCGCCGTCGATTTCTCAATCTCTCACCGGCGATT 78
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 41 AAGCAAAACCCTAGAGCTCAAGGTAATCGCCGTCGATTTCTCAATCTCTCACCGGCGATT 100
Query 79 TTAAGCCGGTGAAAGTTGTACAATA---GCTGTAAGAGAGATATTCATTAGGTA-TTTTA 134
| |||| |||||||||||||||| ||||||||||||| ||| || ||||| |||||
Sbjct 101 ACATGCCGATGAAAGTTGTACAATAGCTGCTGTAAGAGAGAGATTTATCAGGTATTTTTA 160
Query 135 GAACCATGTATAGAGACAGAGGAACGGTGAATTCGAGACCTGAAGTTGTGGATCGTAAAC 194
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 GAATCATGTATAGAGACAGAGGAACGGTGAATTCGAGACCTGAAGTTGTGGATCGTAAAC 220
Query 195 GGATCAACGACGCTCTCGAACGACCTTCTCCGTCAACGTCTCGTCAAGTTAATGGTAAAG 254
|||||||||||||||| ||||| |||||||| ||||| |||||||||||||| || ||||
Sbjct 221 GGATCAACGACGCTCTTGAACGTCCTTCTCCTTCAACCTCTCGTCAAGTTAACGGCAAAG 280
Query 255 GCAAAGG-A-----ACGGCGGCGACGGCGAACTCCG-TTTTGATTGGGAAGCAGCAGTC- 306
||||||| | |||||||||||| || || || ||||||||||||||||||||
Sbjct 281 GCAAAGGAACCGTTACGGCGGCGACGACG-ACGGCGAACTTGATTGGGAAGCAGCAGTCG 339
Query 307 --T--CAT-GACCATAGAGATTCTCGTTCTGCTTCTCTCTCGAAGAACAATAATGTTTCT 361
| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 340 AATAACATCAACCATAGAGATTCTCGTTCTGCTTCTCTCTCGAAGAACAATACGGTTTCT 399
Query 362 GATGATGAATCAGACACGGATAGTGAAGAATCGGATGTTAGTGGTTCTGATGGAGAGGAT 421
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 400 GATGATGAATCAGACACAGATAGTGAAGAATCAGATGTGAGTGGTTCTGATGGAGAGGAC 459
Query 422 ACTTCATGGATATCTTGGTTTTGTAATCTACGAGGAAACGAGTTCTTTTGTGAAGTTGAT 481
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 460 ACTTCATGGATATCTTGGTTTTGTAATCTAAGAGGAAACGAGTTCTTTTGTGAAGTTGAT 519
Query 482 GATGATTATATTCAAGATGACTTTAACCTGTGTGGACTCAGCAGTCTTGTTCCCTACTAC 541
|||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||
Sbjct 520 GATGATTACATTCAAGATGACTTCAACTTGTGTGGACTCAGCAGTCTAGTTCCCTACTAC 579
Query 542 GAGTACGCTCTTGATTTGATTTTGGATGTTGAATCTTCTCATGGAGAGATGTTTACAGAG 601
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 580 GAGTACGCTCTTGATTTGATTTTGGATGTTGAATCTTCTCAAGGAGAGATGTTTACAGAG 639
Query 602 GAACAGAATGAATTGATCGAGTCAGCAGCTGAGATGCTT-TACGGATTGATTCACGCTCG 660
|||||||||||||||||||||||||||||||||||| || || ||| ||||||| |||||
Sbjct 640 GAACAGAATGAATTGATCGAGTCAGCAGCTGAGATG-TTGTATGGACTGATTCATGCTCG 698
Query 661 TTACATATTGACTAGCAAAGGATTGGCTGCGATGTTAGACAAATACAAAAACTATGACTT 720
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 699 TTACATATTGACTAGCAAAGGATTGGCAGCAATGTTAGACAAATACAAAAACTATGACTT 758
Query 721 TGGAAGATGTCCAAGAGTTTATTGCTGTGGCCAACCTTGTCTTCCGGTTGGTCAATCGGA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 759 TGGAAGATGTCCAAGAGTTTATTGCTGTGGCCAACCTTGTCTTCCGGTTGGTCAATCAGA 818
Query 781 CTTACCTCGATCTAGCACTGTGAAGATATATTGCCCGAAATGCGAAGACATTTATTACCC 840
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 CTTACCGCGATCTAGCACTGTGAAGATATATTGCCCGAAATGCGAAGACATTTATTACCC 878
Query 841 ACGGTCGAAGTATCAAGGCAACATTGATGGAGCTTACTTTGGGACAACATTTCCACATCT 900
||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 879 ACGATCAAAGTATCAAGGCAACATTGATGGAGCTTACTTTGGGACAACGTTTCCACATCT 938
Query 901 GTTCCTGATGACTTATGGGCATCTCAAGCCATCAAAGGCAACGCAAAACTATGTTCAAAG 960
||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 939 GTTCCTGATGACTTATGGGCATCTCAAGCCAGCGAAGGCAACACAAAACTATGTTCAAAG 998
Query 961 AGTTTTTGGGTTCAAATTACATAAGCCGTGAAGGAAGTTTAAAGACAA--CCCAAGAATC 1018
||| ||||||||||||||||| || ||||||||||||||| | ||||| |||||| |||
Sbjct 999 AGTGTTTGGGTTCAAATTACACAAACCGTGAAGGAAGTTTGACGACAAAACCCAAGGATC 1058
Query 1019 AAGATCATGGCGTTGGAATGGAACTGAGAAAAGAAGAGACGTGTGTGAACAGAAACGGGA 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1059 AAGATCATGGCGTTGGAATGGAACTGAGAAAAGAAGAGACGTGTGTGAACAGAAACGGAA 1118
Query 1079 AATAAA-CGCGCTGTAATCACACGAATGGTGAAGAGAGCATTCAT------A-----C-- 1124
|||||| ||| |||||||||||||||||||||||||||||||||| | |
Sbjct 1119 AATAAAACGCACTGTAATCACACGAATGGTGAAGAGAGCATTCATGTCTCTATTTGTCTT 1178
Query 1125 -A----CAT-----T-AGAAGAAAGCAAAAGCATGGTTAGGaaa-aaaaaaaa-aGCGAA 1171
| ||| | |||||||||||||||||||||||| ||| |||||||| | ||||
Sbjct 1179 CAGGTACATACACATTAGAAGAAAGCAAAAGCATGGTTAG-AAAGAAAAAAAACA-CGAA 1236
Query 1172 AATCTTTTGATGAGTTTGTTAAAAACTTGAACATGTATTTTTCTACCTT 1220
|||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1237 AATCTTTTAATGAGTTTGTTAAA--CTTGAACATGTATTTTTCTACCTT 1283
> AT4G17640.1 | Symbols: CKB2 | casein kinase II beta chain 2
| chr4:9825197-9827272 FORWARD LENGTH=1374
Length=1374
Score = 697 bits (377), Expect = 0.0
Identities = 620/735 (84%), Gaps = 25/735 (3%)
Strand=Plus/Plus
Query 276 CGAACTCCGTTTTGATTGGGAAGCAGCAGTCT-CATGACCATA-G-AGATTCTCGTTCTG 332
||| |||||||||||| ||||||||||| | | ||||| | | | | ||| |||||||
Sbjct 372 CGACCTCCGTTTTGATGGGGAAGCAGCAAT-TGCATGA-TA-AGGAATCTTCACGTTCTG 428
Query 333 CTTCTCTCTCGAAGAACAATAATGTTTCTGA-----T-GATGA-ATCAGACACGGATAGT 385
|||| |||| ||| || ||| |||| || | ||| | ||||||||| || ||
Sbjct 429 GTTCTATCTCTAAG-AC--TAACATTTCCGACGCTGTGGAT-ATATCAGACACAGACAGC 484
Query 386 GAAGAATCGGATGTTAGTGGTTCTGATGGAGAGGATACTTCATGGATATCTTGGTTTTGT 445
|||||||| || || |||||||||||||||||||| || || |||||||||||||| ||
Sbjct 485 GAAGAATCAGAGGTCAGTGGTTCTGATGGAGAGGACACCTCGTGGATATCTTGGTTCTGC 544
Query 446 AATCTACGAGGAAACGAGTTCTTTTGTGAAGTTGATGATGATTATATTCAAGATGACTTT 505
|| || || || ||||||||||| |||||||||||||||||||| || || |||||||||
Sbjct 545 AACCTTCGTGGGAACGAGTTCTTCTGTGAAGTTGATGATGATTACATCCAGGATGACTTT 604
Query 506 AACCTGTGTGGACTCAG-CAGTCTTGTTCCCTACTACGAGTACGCTCTTGATTTGATTTT 564
||| ||||||||||||| || || ||||| |||||||| || || ||||||||||||||
Sbjct 605 AACTTGTGTGGACTCAGCCA-TCAAGTTCCTTACTACGACTATGCCCTTGATTTGATTTT 663
Query 565 GGATGTTGAATCTTCTCATGGAGAGATGTTTACAGAGGAACAGAATGAATTGATCGAGTC 624
|||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 664 GGATGTGGAGTCTTCGCATGGTGAGATGTTTACAGAGGAACAGAATGAATTGATCGAGTC 723
Query 625 AGCAGCTGAGATGCTTTACGGATTGATTCACGCTCGTTACATATTGACTAGCAAAGGATT 684
|||||| |||||||| || ||| ||||||| ||||||| |||||||||||||||||| |
Sbjct 724 AGCAGCAGAGATGCTATATGGAATGATTCATGCTCGTTTCATATTGACTAGCAAAGGGCT 783
Query 685 GGCTGCGATGTTAGACAAATACAAAAACTATGACTTTGGAAGATGTCCAAGAGTTTATTG 744
|||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 784 GGCTTCTATGTTAGACAAATACAAAAACTATGACTTTGGAAGATGCCCAAGAGTTTATTG 843
Query 745 CTGTGGCCAACCTTGTCTT-CCGGTTGGTCAATCGGACT-TACCTCGATCTAGCACTGTG 802
||||||||||||||| || || ||||||||||| || | | ||| || | ||||| ||
Sbjct 844 TTGTGGCCAACCTTGT-TTACCAGTTGGTCAATCCGA-TATCCCTAGAGCAAGCACCGTA 901
Query 803 AAGATATATTGCCCGAAATGCGAAGACATTTATTACCCACGGTCGAAGTATCAAGGCAAC 862
|||||||| ||||| ||||| ||||| | ||||||||||| || || || ||||| |||
Sbjct 902 AAGATATACTGCCCAAAATGTGAAGATGTCTATTACCCACGATCAAAATACCAAGGAAAC 961
Query 863 ATTGATGGAGCTTACTTTGGGACAACATTTCCACATCTGTTCCTGATGACTTATGGGCAT 922
|| ||||||||||||||||||||||| ||||||||||||||| ||||||| || ||||||
Sbjct 962 ATAGATGGAGCTTACTTTGGGACAACGTTTCCACATCTGTTCTTGATGACGTACGGGCAT 1021
Query 923 CTCAAGCCATCAAA-GGCAACGCAAAACTATGTTCAAAGAGTTTTTGGGTTCAAATTACA 981
|| |||||| |||| |||| | |||| ||| ||||||||| ||||||||||| ||||
Sbjct 1022 CTGAAGCCA-CAAAAGGCATCACAAAGCTACACTCAAAGAGTGTTTGGGTTCAAGCTACA 1080
Query 982 TAAGCCGTGAAGGAA 996
||||||||||||||
Sbjct 1081 CAAGCCGTGAAGGAA 1095
> AT2G44680.1 | Symbols: CKB4 | casein kinase II beta subunit
4 | chr2:18426572-18428357 REVERSE LENGTH=1369
Length=1369
Score = 366 bits (198), Expect = 2e-100
Identities = 452/572 (79%), Gaps = 28/572 (5%)
Strand=Plus/Plus
Query 362 GATGATGAATCAGACACGGATAGTGAAGAATCGGATGTTAGTGGTTCTGATGGAGAGGAT 421
|||| |||||| |||||||||||||||| ||| ||||| |||||||| || || || |||
Sbjct 411 GATGTTGAATCTGACACGGATAGTGAAGGATCAGATGTGAGTGGTTCAGAAGGTGATGAT 470
Query 422 ACTTCATGGATATCTTGGTTTTGTAATCT-ACGAGGAAACGAGTTCTTT-TGTGAAGTTG 479
|| || ||||| || |||||||||||| | | |||| || ||||| ||| |||||||| |
Sbjct 471 ACCTCTTGGATCTCATGGTTTTGTAATTTGA-GAGGGAATGAGTT-TTTCTGTGAAGTAG 528
Query 480 ATGATGATTATATTCAAGATGACTTT-AACCTGTGTGGACTCAGCAGTCTTGTTCCCTAC 538
|||| |||||||| |||||||| ||| || || ||||| | || ||| ||||| |||
Sbjct 529 ATGAAGATTATATACAAGATGA-TTTCAATCTCTGTGGTTTGAGTGGTCAAGTTCCTTAC 587
Query 539 TACGAGTACGCTCTTGATTTGATTTTGGATGTTGAATCTTCTCATGGAGAGATGTTTACA 598
|| || || || |||||| | ||||| ||||||||||| || |||| || ||||||||
Sbjct 588 TATGATTATGCACTTGATCTCATTTTAGATGTTGAATCATCAAATGGTGATATGTTTACT 647
Query 599 GAGGAACAGAATGA-ATTGATCGAGTCAGCAGCTGAGATGCTT-TACGGAT-TGATTCAC 655
|| |||||| |||| | || | || ||||| ||||||||| || || || | | |||||
Sbjct 648 GAAGAACAGCATGAGA-TGGTGGAATCAGCTGCTGAGATG-TTATATGG-TCTTATTCAT 704
Query 656 GCTCGTTACATAT-TGACTAGC-AAAGGATTGGCTGCGATGTTAGACAAATACAAAAACT 713
| |||||| || | | |||| | |||||| ||||||| ||| | || || || || || |
Sbjct 705 GTTCGTTATAT-TCTCACTA-CTAAAGGAATGGCTGCTATGATGGAGAAGTATAAGAATT 762
Query 714 ATGACTTT-GGAAGATGTCCAAGAGTTTAT-TGCTGTGGCCAACCTTGTCTTCCGGTTGG 771
|||| ||| || ||||| || ||||||| | || || || || ||||||||||||||||
Sbjct 763 ATGA-TTTCGGGAGATGCCCCAGAGTTT-TCTGTTGCGGACAGTCTTGTCTTCCGGTTGG 820
Query 772 TCAATCGGACTTA-CCTCGA--TCTAGCACTGTGAAGATATATTGCCCGAAATGCGAAGA 828
||||| || || || ||| || ||||||||||||||||| ||||| |||||||| ||
Sbjct 821 CCAATCTGA--TATCC-CGAGGTCGAGCACTGTGAAGATATACTGCCCAAAATGCGAGGA 877
Query 829 CATTTATTACCCACGGTCGAAGTATCAAGGCAACATTGATGGAGCTTACTTTGGGACAAC 888
||||| ||||| || || || || ||||||||||||||||||||||||||||| || ||
Sbjct 878 TATTTACTACCCGCGATCTAAATACCAAGGCAACATTGATGGAGCTTACTTTGGAACTAC 937
Query 889 ATTTCCA-CATCTGTTCCTGATGACTTATGGG 919
||||| ||| |||| || ||| | ||||||
Sbjct 938 -TTTCCCTCATTTGTTTCTCATGGCCTATGGG 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59939450730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5