BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494273
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47070.1 | Symbols: | Protein kinase superfamily protein | ... 1964 0.0
AT4G17660.1 | Symbols: | Protein kinase superfamily protein | ... 484 8e-136
> AT5G47070.1 | Symbols: | Protein kinase superfamily protein
| chr5:19118543-19120909 REVERSE LENGTH=1754
Length=1754
Score = 1964 bits (1063), Expect = 0.0
Identities = 1287/1386 (93%), Gaps = 51/1386 (4%)
Strand=Plus/Plus
Query 193 TTTTCTATCTCTTC-TTAAGACATGAATTGTCTGTTCTTGTTcaaatcaaagaaacccaa 251
|||| |||||| || |||||||||||| ||||||||||||||||||||||||||| |
Sbjct 361 TTTTTTATCTC-TCTTTAAGACATGAACTGTCTGTTCTTGTTCAAATCAAAGAAA--C-- 415
Query 252 atccagaaatcaacagaaagacaacaacaacaacaacaaaaagaacaaaagaaaaggtaa 311
||||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 416 --CCAGAAAGCAACAGAAAG---------ACAACAAC---AAGAACAAAAGAAAAGGTAA 461
Query 312 agaattgttacaaaacTCAGCTCCAGAACTGACTAATCGGAGTGAAACGTCGTCGTTTAA 371
||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 462 AGAGTTGTTACAAAACTCAGCTCCAGAACTGACGAATCGGAGTGAAACGTCTTCGTTTAA 521
Query 372 TCTCCAGACGCCAAGATCGTTGCCTTCTCCAAGAAGTATCAAAGATTTGTATACAGAGAG 431
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TCTCCAGACACCAAGATCGTTGCCTTCTCCAAGAAGTATCAAAGATTTGTATACAGAGAG 581
Query 432 AGAACAAAATCTTAGGGTTTTCACTTACGAAGAACTCAGTAAAGCCACTTATGGGTTCAG 491
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||
Sbjct 582 AGAACAAAATCTTAGGGTTTTTTCTTACGAAGAACTCAGTAAAGCCACTTATGTGTTTAG 641
Query 492 CAGAAAGCTTGCGATCGGTGAAGGTGGATTTGGTATTGTTTATAAAGGAAAGATTCTCAA 551
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 CAGAAAGCTTGTGATCGGTGAAGGTGGATTTGGTATTGTTTATAAAGGAAAGATTCTCAG 701
Query 552 CAATGGAGA---TTCTGATCCTCCACTAGTCGTCGCCATTAAGAAACTCAATCGACAAGG 608
||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 702 CAATGGAGATTCTTCTGATCCTCCACTTGTCGTTGCCATCAAGAAACTCAATCGACAAGG 761
Query 609 TTTACAGGGTCACAAGCAATGGCTAGCAGAGGTTCAGTTTCTTGGAGTAGTGAATCATCC 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 TTTACAGGGTCACAAGCAATGGCTAGCAGAGGTTCAGTTTCTTGGAGTAGTGAATCATCC 821
Query 669 GAACGTTGTGAAGCTCATAGGTTATTGCTCGGAAGACGGCGAGACTGGGATCGAGAGGCT 728
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 822 GAACGTTGTGAAGCTCATAGGTTATTGCTCGGAAGACGGCGAGACCGGGATCGAGAGGCT 881
Query 729 TTTGGTTTATGAGTATATGTCGAATCGAAGTTTAGAGGACCATCTCTTTCCACGTCGATC 788
||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 882 TTTGGTTTATGAGTACATGTCGAATCGAAGTTTAGAAGACCATCTCTTCCCTCGTCGATC 941
Query 789 ACACACATTACCGTGGaaaaaaaGACTCGAGATCATGCTTGGTGCAGCTGAAGGATTGGC 848
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 942 ACACACATTACCGTGGAAAAAAAGACTCGAGATCATGCTTGGTGCTGCTGAAGGATTGAC 1001
Query 849 TTATTTACATGAACTTAAGGTTATATATCGAGATTTCAAATCGTCTAATGTGCTCTTAGA 908
|||||||||||| |||||||| |||||| ||||||||||||| ||||||||||| |||||
Sbjct 1002 TTATTTACATGATCTTAAGGTGATATATAGAGATTTCAAATCCTCTAATGTGCTTTTAGA 1061
Query 909 CCATGAATTCTGTCCGAAATTATCAGACTTTGGGCTTGCCAGAGAAGGGCCTGAGGGCGA 968
| || |||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 1062 CGATCAATTCTGTCCAAAATTATCGGACTTTGGGCTTGCCAGAGAAGGACCTGATGGCGA 1121
Query 969 CAATACTCATGTCACTACCGCAAGAGTTGGTACACACGGCTATGCAGCTCCTGAATACGT 1028
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1122 CAATACTCATGTCACTACCGCAAGAGTTGGAACACACGGCTATGCGGCTCCGGAATACGT 1181
Query 1029 GCAAACAGGTCATCTTCGGTTAAAGAGCGATGTCTATAGCTTCGGTGTTGTGCTCTACGA 1088
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1182 GCAAACAGGTCATCTTCGGTTAAAGAGCGACGTCTATAGCTTCGGTGTTGTGCTCTACGA 1241
Query 1089 GATCATAACCGGACGCCGAACCATTGAGAGGAACAAGCCAGTGGCTGAACGAAGGCTATT 1148
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 GATCATAACCGGACGCAGAACCATTGAGAGGAACAAGCCAGTGGCTGAACGAAGGCTATT 1301
Query 1149 GGATTGGGTGAAAGAGTATCCTGCTGATAGTCAACGGTTCAGCATGATCGTTGACCCTCG 1208
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1302 GGATTGGGTCAAAGAGTATCCTGCTGATAGTCAACGTTTCAGCATGATCGTTGACCCTCG 1361
Query 1209 GTTACGCAACAATTATCCAGCTGCTGGAGCTAGGAGTTTGGCTAAATTGGCTGATCTTTG 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 GTTACGCAACAATTATCCAGCTGCTGGAGCTAGGAGTTTGGCTAAATTGGCTGATCTTTG 1421
Query 1269 TCTGAAAAAGAACGATAAAGAGCGACCCACAATGGAAATTGTAGTAGAAAGATTGAAAAA 1328
|||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 1422 CCTGAAAAAGAACGATAAAGAGCGACCTACGATGGAAATTGTAGTGGAAAGATTGAAAAA 1481
Query 1329 GATTATCGAAGAATCCGATAATGAAGATTATCCGATGGCTAC-A----G-CTAAGGAAAG 1382
||||||||||||||| |||| ||||||||||||||||||||| | | | ||||||||
Sbjct 1482 GATTATCGAAGAATCGGATAGTGAAGATTATCCGATGGCTACGACTACGACCAAGGAAAG 1541
Query 1383 TAGTCAGGTAAGGAGGAGACAAGTTGCAAAACCTGAGAAACAAAGTTTGAGAGAAGGGGT 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1542 TAGTCAGGTAAGGAGGAGACAAGTTGCAAAACCTGAGAAACAAAGTTTGAGAG--GGG-T 1598
Query 1443 TAGTGTCAGAGGATGATTTTGAGTTTAGAAGTTTTTT---A--T--A-A-AT-A-A---- 1487
||||||||||||||||||||||||||||||||||||| | | | | || | |
Sbjct 1599 TAGTGTCAGAGGATGATTTTGAGTTTAGAAGTTTTTTTGCAAGTTTATATATTATAAATA 1658
Query 1488 -GTTTATGCAATTTGTTGGTTTATTGTGAGATGATTAGTAGAGAAAATGTATCTTATTGT 1546
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1659 AGTTTATGCAATTTGTTGGTTTATTGTGAGAT--T-AGTAGAGAAAATGTATCTTATTGT 1715
Query 1547 GTGTTT 1552
||||||
Sbjct 1716 GTGTTT 1721
Score = 137 bits (74), Expect = 3e-31
Identities = 95/105 (90%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 97 ATTTGTTCCATTTTCTTAATTTCAGAACTTGAGAAACCCAAAAAAGGAAACTATTAGTAC 156
|||||||||||||||| ||||| ||||||| |||||||| |||||| ||| | |||||||
Sbjct 232 ATTTGTTCCATTTTCTCAATTTTAGAACTTAAGAAACCC-AAAAAGCAAATTTTTAGTAC 290
Query 157 ATTTTGTGGGTTTAACTAAAGTAATTAATTTTTGTGTTTTCTATC 201
||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 291 ATTTTCT-GGTTTAACTAAAGTAATTAATTTTTGTGTTTTCCATC 334
Score = 84.2 bits (45), Expect = 3e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 50 ATAGATCTGTGTTCATACTCTTCTTCCACAATCTAACCCAAAGAAAAA 97
|||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 157 ATAGATCTGTGTTCATACTCTTCTTCCACAATCTAACCCAAAAAAAAA 204
> AT4G17660.1 | Symbols: | Protein kinase superfamily protein
| chr4:9831359-9833006 FORWARD LENGTH=1209
Length=1209
Score = 484 bits (262), Expect = 8e-136
Identities = 872/1153 (76%), Gaps = 96/1153 (8%)
Strand=Plus/Plus
Query 212 ACATGAATTGTCTGTTCTTGTTcaaatcaaagaaacccaaatccagaaatcaacagaaag 271
|||||||||||||||||||||||| || |||||||| |||||||| | || | | |
Sbjct 41 ACATGAATTGTCTGTTCTTGTTCATGTCCAAGAAACCAAAATCCAG--AGGAA-A-TATG 96
Query 272 acaacaacaacaacaacaaaaagaacaaaagaaaaggtaa-agaattgttacaaaacTCA 330
| | || | | ||||| |||| ||| ||| || ||| || || ||||| |||
Sbjct 97 --GA-GA-AA-GA-GA-AAAAA-AACATAAG---AGG-AAGAGAGTTCTTGCAAAAGTCA 144
Query 331 GCTCCAGAACTGACTAATCG-GAGTGA-AACGTCGTCGTTTAATCT-CCAGACGCCAAGA 387
||||||||| | || | || || || ||| | |||||| ||||| ||| || ||||||
Sbjct 145 GCTCCAGAATTAAC-GA-CGAGAAAGACAACTTTGTCGTTCAATCTCCCA-ACACCAAGA 201
Query 388 TCGT-TGCCTTCTCCAA-GAAGTATCAAAGATTTGTATACAGAGAGAGAACAAAATC--- 442
|| | |||| ||||||| | ||||||||||| ||||| ||||| |||||||||||||
Sbjct 202 TC-TCTGCCATCTCCAACG-AGTATCAAAGACTTGTACACAGACAGAGAACAAAATCAAA 259
Query 443 -T-------T-AGGGTTTTCACTTACGAA-GAACTCAGTAAAGCCACTTATGGGTTCAGC 492
| | |||||||| ||| | || ||||| ||| | ||||||| || ||| |||
Sbjct 260 ATCAAAACCTGAGGGTTTTTTCTTTC-AAGGAACTGAGTGACGCCACTTGTGAGTTTAGC 318
Query 493 AGAAAGCTTGCGATCGGTGAAGGTGGATTTGGTATTGTTTATAAAGGAAAGATT--C--T 548
|| ||||| |||||| |||||||| ||||||| ||| ||||||| | ||| | |
Sbjct 319 AGGAAGCTAAAGATCGGAGAAGGTGGCTTTGGTAGTGTCTATAAAGCCACCATTAACAAT 378
Query 549 -CAACAAT-GGAGATTCTGA-TC--CTCCAC-TAGTCGTCGCCATTAAGAAACTCAATCG 602
| || | ||||||||| | || |||||| || ||| ||| |||||||||||||| |
Sbjct 379 CCCACCGTAGGAGATTCTCATTCTTCTCCACTTA-CCGTAGCCGTTAAGAAACTCAATAG 437
Query 603 ACAAGGTTTACAGGGTCACAAGCAATGGCTAGCAGAGGTTCAGTTTCTTGG-AGTAGTGA 661
|||| || |||||||||||||||||||||||||||||||||| ||| |||| ||| ||||
Sbjct 438 ACAAAGTCTACAGGGTCACAAGCAATGGCTAGCAGAGGTTCACTTT-TTGGGAGTGGTGA 496
Query 662 ATCATCCGAACGTTGTGAAGCTCATAGGTTATTGCTCGGAAGACGGCGAGACTGGGATCG 721
|||| || |||||||||| |||| |||| |||||||| || ||| ||| | | |
Sbjct 497 ATCACCCTAACGTTGTGAGGCTCTTAGGGTATTGCTCAGAGGAC----AGA--G--A--G 546
Query 722 AGAGGCTTTTGGTTTATGAGTAT-ATGTCGAATCGAAGTTTAGAGGACCATCTCTTTCCA 780
||| ||||||||||| |||| | ||||| ||||| || || ||||| |||||||| | |
Sbjct 547 AGA--CTTTTGGTTTACGAGT-TGATGTCTAATCGCAGCTTGGAGGATCATCTCTT-C-A 601
Query 781 CGTCGATCACAC---A-CATTACCGTGGaaaaaaaGACTCGAGATCATGCTTGGTGCAGC 836
| || | | || | | || |||||||| |||| |||||||||||||||||||||||
Sbjct 602 C-TCTAAGA-ACCTTAACGTTGTCGTGGAAACAAAGGCTCGAGATCATGCTTGGTGCAGC 659
Query 837 TGAAGGATTGGCTTATTTACATGAACTTAAGGTTATATATC-GAGATTTCAAATCGTCTA 895
| |||||||||||||||| || ||| | |||| ||||| | |||| |||||||| || |
Sbjct 660 TCAAGGATTGGCTTATTTGCACGAAATCCAGGTAATATA-CAGAGACTTCAAATCATCAA 718
Query 896 ATGTGCTCTTAGACCATGAATTCTGTCCGAAATTATCAGACTTTGGGCTTGCCAGAGAAG 955
||||||| ||| | | |||||| |||||||||||| || ||||| || || |||||||
Sbjct 719 ATGTGCTATTAAATGAAGAATTCCATCCGAAATTATCCGATTTTGGTCTCGCTAGAGAAG 778
Query 956 GGCCTGAGGGCGACAATACTCATGTCACTACCGCAAGAGTTGGTACACACGGCTATGCAG 1015
| || || || ||||||||||| || || |||||||||||||| ||| |||||||||| |
Sbjct 779 GTCCCGAAGGAGACAATACTCACGTTACAACCGCAAGAGTTGGAACAGACGGCTATGCCG 838
Query 1016 CTCCTGAATACGTGCA-AACAGGTCATCTTCG-GTTAAAGAGCGATGTCTATAGCTTCGG 1073
|||| || || || | ||| ||||| || | | | | ||||||| |||||||| ||
Sbjct 839 CTCCCGAGTATGTA-ATAACCGGTCACCT-CAAGACACATTGCGATGTATATAGCTTTGG 896
Query 1074 TGTTGTGCTCTACGAGATCATAACCGGACGCCGAACCATTGAGAG-GAAC-AAGCCAGTG 1131
||||| | ||||| || || || || || || || |||| || ||| || || |
Sbjct 897 AGTTGTTTTGTACGAAATTATCACTGGTCGTCGCAC-ATTG-GAACGAATGAAACCTTTA 954
Query 1132 GCTGAACGAAGGCTAT-TGGATTGGGTGAAAGAGTATCCTGCTGATAGTCAACGG-TTCA 1189
||||||| || ||| | | || ||||| ||| | |||||| | |||| ||| | ||||
Sbjct 955 GCTGAACAAAAGCT-TCTAGAATGGGTCAAAAAATATCCTATTAATAG-CAAAAGATTCA 1012
Query 1190 GCATGATCGTTGAC-CCTCGGTTACGCAACAATTATCCAGCTGCT--GGAGCTAGGAGTT 1246
|||||||||||| || | | | |||| || |||||| |||| || | |||||
Sbjct 1013 AAATGATCGTTGACTCCAAGCT-ATGCAATAAGTATCCAATTGCTATGGT-C-AGGAGAG 1069
Query 1247 TGGCTAAATTGGCTGATCTTTGTCTGAAAAAGAACGATAAAGAGCGACCCACAATGGAAA 1306
|||||||||||||||||| |||| |||| |||| ||||||||| |||| || ||||
Sbjct 1070 TGGCTAAATTGGCTGATCATTGTGTGAACAAGATCGATAAAGAAAGACCTACCATGGCCT 1129
Query 1307 TTGTAGTAGAAAG 1319
|||| || |||||
Sbjct 1130 TTGTCGTCGAAAG 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76606031670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5