BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494274
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47060.1 | Symbols: | Protein of unknown function (DUF581) ... 800 0.0
> AT5G47060.1 | Symbols: | Protein of unknown function (DUF581)
| chr5:19116788-19118046 FORWARD LENGTH=996
Length=996
Score = 800 bits (433), Expect = 0.0
Identities = 535/582 (92%), Gaps = 16/582 (3%)
Strand=Plus/Plus
Query 1 CTCTCTCTTTCACCTTCTCTCTAAAAACCAG-AAAGaaaaaaaTGGAGGTTTCGTCGAGA 59
||||||||||||| ||||||||||||||||| ||| |||||||||||| |||| ||||||
Sbjct 14 CTCTCTCTTTCACTTTCTCTCTAAAAACCAGAAAAAAAAAAAATGGAGCTTTCATCGAGA 73
Query 60 AAGCCTTATTTCATCGAAGAAGAAGAAGATGATAATTTAGCTTCTTCTTTAACAGAAATG 119
|||||||||||||| || ||||||||||| || ||||| |||||||||||| ||||||||
Sbjct 74 AAGCCTTATTTCATTGAGGAAGAAGAAGAAGAGAATTTGGCTTCTTCTTTATCAGAAATG 133
Query 120 GAAGCTGGGTTTTCTGGTAGC---AAT-A-A-CAAT---CATGGAAATCCCCAAAGCGGT 170
||||||||||||||||||| | ||| | | ||| |||||||||||||||| ||||
Sbjct 134 GAAGCTGGGTTTTCTGGTAACAATAATAATAGTAATAACCATGGAAATCCCCAAAACGGT 193
Query 171 GTCG--T-TTCAAGCCGTTTCTCTTACGTTAGAATAAACAGTCTCAGGAACACT-TGTAA 226
|||| | |||||||||||||||||||| |||| |||||||||| ||||||| | | |
Sbjct 194 GTCGTTTCTTCAAGCCGTTTCTCTTACGGTAGATTAAACAGTCTTAGGAACAGTCAG-AG 252
Query 227 TAATTATTACAATCAATACTCTGTTTCGTCTCCGAGATCTGTTGTTTCTGGAAGATTTCA 286
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 253 TTATTATTACAATCAATACTCTGTTTCGTCTCCGAGATCTGTTGTGTCTGGAAGATTTCA 312
Query 287 TGATTTCAGATTCGATAATCAACAACCTCATTTCTTGGATTCGTGTTTCCTCTGTAAGAA 346
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 313 TGATTTCAGATTCGATATTCAACAACCTCATTTCTTGGACTCGTGTTTCCTCTGTAAGAA 372
Query 347 ACCTCTTGGTGACAACAGAGACATCTTTATGTACAGAGGAGACACACCGTTTTGCAGTga 406
|||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 373 ACCTCTTGGTGATAACAGAGACATCTACATGTACAGAGGAGATACACCGTTTTGCAGTGA 432
Query 407 agagtgtagacaagaacagatagagagagatgaagcaaaagagaagaaacagaaTCTGTC 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 AGAGTGTAGACAAGAACAGATAGAGAGAGATGAAGCAAAAGAGAAGAAACAGAATCTGTC 492
Query 467 TTATTCTGTGAAATCAGCTATGAGGAGGAAAGAACAATCTTCTCCAACTAGATCTCGTGA 526
| |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 493 TCATTCGGTGAAATCAGCTATGCGGAGGAAAGAACAATCTTCACCAACTAGATCTCGTGA 552
Query 527 TTATGCTTTTCACAATGGAACTGTTGCTGCTGCTTAAATTAA 568
||||||||||||||||||||||||||||||||||||| ||||
Sbjct 553 TTATGCTTTTCACAATGGAACTGTTGCTGCTGCTTAA-TTAA 593
Score = 346 bits (187), Expect = 2e-94
Identities = 247/274 (90%), Gaps = 12/274 (4%)
Strand=Plus/Plus
Query 560 TTA-AATTAATTAGGTTAAGaaaaaaaTAAGCTATATTTTATCTAACGCTATGAAGCTGG 618
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 619 TTATAATTAATTAGGTTAAGAAAAAAATAAGCTATATTGTATCTAACGCTATGAAGCTGG 678
Query 619 TTTTGTTTTGGAT-TCTCTCTCTCGAGATCTTGA-GATCTTTT-TAACTTTAGCTTCAAG 675
||||| | | ||| |||||||||||||| | |||||||| |||||||||||||||
Sbjct 679 TTTTGGATCCTCTCTCTTTCTCTCGAGATCTTAAGGATCTTTTAAAACTTTAGCTTCAAG 738
Query 676 TCTTGTG-AAAAGA-GGA-AAGCTAAAGATCCTTTAAttttcttttctttttttGTAAGA 732
||||| | |||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TCTTGGGAAAAAGATGAAGAAGCTAAAGATCCTTTAATTTTCTTTTCTTTTTTTGTAAGA 798
Query 733 GAAAAAAGAGTTTCTTGACTTGAAATTTTGGGAGTATGAGAAGAGAAAATGTAAATGCCT 792
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 799 -AAAAAATAGTTTCTTGACATGAAATTTTGGGAGTATGAGAAGAGAAAATGTAAATGCCT 857
Query 793 ATGTGAATTAT----GTCCATGGCATGTTCGAGT 822
||||||||||| |||||||||||||| ||||
Sbjct 858 ATGTGAATTATAATAGTCCATGGCATGTTTGAGT 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40036615159
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5