BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494275
Length=1499
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47050.1 | Symbols: | SBP (S-ribonuclease binding protein) ... 1352 0.0
> AT5G47050.1 | Symbols: | SBP (S-ribonuclease binding protein)
family protein | chr5:19106340-19108348 FORWARD LENGTH=1663
Length=1663
Score = 1352 bits (732), Expect = 0.0
Identities = 887/961 (92%), Gaps = 14/961 (1%)
Strand=Plus/Plus
Query 204 TTCTCTCTGTTCATGGCGGTTCAAGCTCATCACCAACCTTCTACTCTCTTCTTCCTCAAC 263
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 261 TTCTCTCTGTTCATGGCGGTTCAAGCTCATCACCATCCTTCTACTCTCTTCTTCCTCAAC 320
Query 264 AACGGACAAGAAGGGAATGATTGTTCGAATCAGCCTCATAAATCTCAGTTTCATTTAATC 323
||||||||||||||| | | | | ||||||| ||||||||||||||||||| ||||
Sbjct 321 AACGGACAAGAAGGG-A--A----T-G-ATCAGCCGCATAAATCTCAGTTTCATTCAATC 371
Query 324 AACGCCGGGGTTGATTCAAGAAAGCGAGCGAGAGAAGTTTCGTCGGTGATTGATTTAGAT 383
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 372 AACGCCGGGGTTGATACAAGAAAGCGAGCGAGAGAAGTTTCTTCGGTGATTGATTTAGAT 431
Query 384 ATCACGGTGGCTCCGATGAACCCTCCGCCGCAAACTCCGCCGCAAGTTATCGGACGTCGA 443
||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 432 ATCACGGCGGCTCCGATGAACCCTCCGCCGCAAACTCCACCGCAAGTTATAGGACGTCGA 491
Query 444 CAAGCTCCGAATGTAGTATCAACTGGTCTACGTTTGTCTCGTGAACAGTCGCAGAATCAA 503
||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 492 CAAAATCCGAATGTTGTATCAACCGGTCTACGTTTGTCTCGTGAACAGTCGCAGAATCAA 551
Query 504 GAACAACCGTTTTTGTCTTTTCCGATGACCGGGGATGTCGCCGGAGAAATCAAAAACCAA 563
||||||| |||||||||||||||||| ||||| |||||||||||||||||||||| ||||
Sbjct 552 GAACAACGGTTTTTGTCTTTTCCGATAACCGGAGATGTCGCCGGAGAAATCAAAAGCCAA 611
Query 564 ACGGACGAATTAAATAGATTTCTACAAATCCAGGGAGAGCAGCTGAGGCGCATGTTAGCG 623
||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 612 ACGGACGAATTAAATAGATTTCTTCAAATCCAGGGAGAGCAGCTTAAGCGCATGTTAGCT 671
Query 624 GAAAACAATGAAAGGCACTATCGTGAGCTACTAAGAACGACGGAAGAATCAGTTAGGCGG 683
||||||| ||| ||| ||||||||||||| || ||||| |||||||||||||| ||||||
Sbjct 672 GAAAACAGTGAGAGGAACTATCGTGAGCTTCTGAGAACAACGGAAGAATCAGTAAGGCGG 731
Query 684 AGATTAAGAGAGAAAGAAGCAGAGATCGAGAAAGCCACGCGTCGTCATGTCGAGCTAGAA 743
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 732 AGATTAAGAGAGAAAGAAGCGGAGATCGAGAAAGCCACACGTCGTCATGTCGAGCTAGAA 791
Query 744 GCACGTGCGGCTCAAATGGAAACAGAGTCACGTGCCTGGCAAATGAGAGCGGCGGCGAGA 803
||||||||| |||| || ||||||||| ||||||| |||||||||||||| || || |||
Sbjct 792 GCACGTGCGACTCAGATCGAAACAGAGGCACGTGCTTGGCAAATGAGAGCAGCTGCTAGA 851
Query 804 GAAGCCGAAGCGACGTCGTTACAAGCTCAATTGCAGCAAGCCGTAGTTGTAGCTCACGGC 863
|||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 852 GAAGCCGAAGCGACGTCGTTACAAGCTCAATTACACCAAGCCGTAGTAGTAGCTCACGGT 911
Query 864 GGTGGAATTATTACGACGGCGGAGCCACAATCGGGAAGCGTAGACGGTGTGGATGATGCC 923
|| ||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 912 GGCGGAGTTATTACGACGGTGGAGCCACAATCGGGAAGCGTAGACGGTGTGGATGAAGCT 971
Query 924 GAAGATGCCGAATCGGCTTACGTGGATCCAGATC-GGTACGAAAT-AATCGAGCCGAGAT 981
||||| |||||||||||||| |||||||| || | ||| |||||| | | || ||| |||
Sbjct 972 GAAGACGCCGAATCGGCTTATGTGGATCCCGACCGGGT-CGAAATGATTGGA-CCGGGAT 1029
Query 982 GTAAGATTTGCCGGCGGCGATCGGCGACGGTGTTGGCTTTGCCGTGTCGTCATTTGGTTC 1041
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 GTAGGATTTGCCGGCGGCGATCGGCGACGGTGTTGGCTTTGCCGTGTCGTCATTTGGTTA 1089
Query 1042 TGTGTAAAGGATGCGATGGCTCCGTGAGAATTTGTCCGCTATGCCTTAGCACGAAGAATT 1101
|||||| || |||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1090 TGTGTACAGAATGCGACGGCTCCGTGAGAATTTGTCCGCTTTGCCTTAGCACGAAGAATT 1149
Query 1102 CAGGCGTGGAGGTTTTCTATTCTTGATGGGCTCATTCTATAATGGGCTTATCAGGCCCAA 1161
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1150 CAAGCGTGGAGGTTTTCTATTCTTGATGGGC-CATTCTATAATGGGCTTATCAGGCCCAA 1208
Query 1162 T 1162
|
Sbjct 1209 T 1209
Score = 291 bits (157), Expect = 2e-77
Identities = 230/263 (87%), Gaps = 13/263 (5%)
Strand=Plus/Plus
Query 1246 TTTTTGGTTTTTAGAAATTCTTTTGATATCGTAATAAATCAACCTTGACTG-TTAA-ATT 1303
|||||||| ||||| |||||||||||| |||||||||||||||||||| || |||| ||
Sbjct 1355 TTTTTGGTCTTTAGGAATTCTTTTGATTTCGTAATAAATCAACCTTGATTGTTTAATTTT 1414
Query 1304 TATTTATTTTACACATATAGCATTTAATATCGATATG----ATTTATGATATTTTAGCT- 1358
|| ||| |||||| ||||||||||| ||| ||||||| ||||||||| |||||| |
Sbjct 1415 TAATTACTTTACATATATAGCATTTGATA-CGATATGATTTATTTATGATGTTTTAG-TA 1472
Query 1359 GATGTTGAGGCATGATTTAGTATTATTTTCAAATGTTTTGTATTGTTATAATATTTGTAT 1418
|| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 GAGGATGAGACATGATTTAGTATTATTTTCAAATGTTTTGTATTGTTATAATATTTGTAT 1532
Query 1419 TATAATTAGGAATATCTTCTAGGGTTTTTGGGATTTTATATAT-T-TTTGTATAAAGCAT 1476
| |||||| |||||| | |||||||||||| | ||||| |||| | ||||||||||||||
Sbjct 1533 TCTAATTAAGAATAT-T-CTAGGGTTTTTGTGTTTTTAAATATCTATTTGTATAAAGCAT 1590
Query 1477 CTTCATTGTTTCTTGTTTTTGGT 1499
|||||| |||||||||||||||
Sbjct 1591 GTTCATTATTTCTTGTTTTTGGT 1613
Score = 200 bits (108), Expect = 3e-50
Identities = 192/227 (85%), Gaps = 28/227 (12%)
Strand=Plus/Plus
Query 1 CTTATTAAAAGctcttcccttaaaaaactccccaattccattcctcttcctcttcc-tct 59
|||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct 1 CTTATTAAAAGCCCTTCCCTT-AAAAACTTCCCAATTCCATTCCTCTTCCTCTTCCTTC- 58
Query 60 tcc-tcgtccttcttcttcACCATTTA-TT-TC-TCAT-AT--TTAT-AAAAGAAAATCA 111
||| || | |||||||||||||||||| || || |||| || |||| ||||| ||||||
Sbjct 59 TCCTTC-TTCTTCTTCTTCACCATTTATTTCTCATCATCATACTTATAAAAAGTAAATCA 117
Query 112 GAATCCCGAACCAAAGTTTCAATC-T---T--TCATCATCATGTCCG----------ATA 155
|||||||||| |||| |||||||| | | ||||||||||||||| |||
Sbjct 118 GAATCCCGAAGCAAACTTTCAATCTTCCATCATCATCATCATGTCCGATACACATACATA 177
Query 156 CATACATATCTTTCGTGTGATTTATACTTATTAAAGAGAAATTCTCT 202
||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 178 CATACATATCTTTCGTGTGATTTATACTTATTAAAGAGAGATTCTCT 224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73945402785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5