BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494277
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47030.1 | Symbols: | ATPase, F1 complex, delta/epsilon sub... 1520 0.0
> AT5G47030.1 | Symbols: | ATPase, F1 complex, delta/epsilon subunit
| chr5:19090298-19092314 FORWARD LENGTH=978
Length=978
Score = 1520 bits (823), Expect = 0.0
Identities = 933/983 (95%), Gaps = 19/983 (2%)
Strand=Plus/Plus
Query 1 TCTCTTTCTCATCTGCGACGTCTAATTTCCCCAATTTCTCAGAGCGACTC-AAATCACCA 59
||||| ||||||||||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 8 TCTCTCTCTCATCTGCGACGTATAATTTCCCCAATTTCTCAGAGAGACTCAAAATCACCA 67
Query 60 CCACCACCAAAATCGCCGCCATGTTGAAACAAGCTTCTCGTCTCCTATCCCGATCTGTCG 119
|||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 68 CCACCACC-AAATCGCCGCCATGTTTAAACAAGCTTCTCGTCTCCTCTCCCGATCTGTCG 126
Query 120 CCGCCGCATCTGCCAAATCGGCGACGACTCGTGCCTTTTCAACGGAACTTCCATCGACGC 179
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 127 CCGCCGCATCTTCCAAATCGGTGACGACTCGTGCCTTTTCAACGGAACTTCCATCGACGC 186
Query 180 TCGATTCGACTTTCGTCGAGGCATGGAAGAAAGTCGCACCGAATATGGAACCACCGCAGA 239
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 187 TCGATTCCACTTTCGTCGAGGCATGGAAGAAAGTCGCACCGAATATGGACCCACCGCAGA 246
Query 240 CTCCTTCTACTTTCATGAAACCTCGTCCTTCGACTCCTTCTTCTATCCCGACGAAGCTCA 299
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 247 CTCCTTCTGCTTTCATGAAACCTCGTCCTTCCACTCCTTCTTCTATCCCGACGAAGCTCA 306
Query 300 CCGTCAATTTTGTCCTTCCTTACACATCTGAGCTTACCGGGAAAGAGGTCGACATGGTCA 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CCGTCAATTTTGTCCTCCCTTACACATCTGAGCTTACCGGGAAAGAGGTCGACATGGTCA 366
Query 360 TCATTCCCGCATCAACAGGACAAATGGGTGTCTTGCCCGGACACGTTCCAACAATTGCTG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 TCATTCCCGCATCAACAGGACAAATGGGTGTCTTGCCCGGACACGTTCCAACAATTGCTG 426
Query 420 AGCTAAAACCCGGTATCATGTCTGTCCATGAAGGCACTGACGTGAAGAAATACTTCCTGA 479
|||||||||| || |||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 427 AGCTAAAACCTGGCATCATGTCCGTCCATGAAGGCACTGACGTGAAGAAATACTTCTTGA 486
Query 480 GCAGTGGTTTTGCATTCCTCCACGCAAATTCAGTCGCCGACATAATCGCGGTTGAAGCTG 539
||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 487 GCAGTGGTTTTGCATTCCTCCACGCAAATTCCGTCGCTGACATAATCGCGGTGGAAGCTG 546
Query 540 TACCACTTGACCACATTGACCCTAGCCAAGTCCAAAAGGGTTTAGCTGAGTTCCAACAGA 599
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TGCCGCTTGACCACATTGACCCTAGCCAAGTCCAAAAGGGTTTAGCTGAGTTCCAACAGA 606
Query 600 AACTTGCTTCTGCCACAACAGATCTTGAGAAAGCAGAGGCACAGATTGGTGTTGAGGTTC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 607 AACTTGCTTCTGCCACAACAGATCTTGAGAAAGCAGAGGCACAGATTGGTGTTGAAGTTC 666
Query 660 ACAGTGCCATCAATGCAGCTCTCTCGGGCTAAAAGAAGGTTACTCTTTTTCTTTATTTCT 719
||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 667 ACAGTGCCATCAACGCAGCTCTCTCGGGCTAAAAGAAGGTT--TCTTT--CTTTATTTCT 722
Query 720 TCGAAGaaa-aaaaaaaaaaCTAAATCATTTGGCTTTTCAAGTGATTAGTGAAGTCCCTT 778
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TCGAAGAAACAAAAAAAAAACTAAATCATTTGGCTTTTCAAGTGATTAGTGAAGTCCCTT 782
Query 779 TTTACTACTACAAAGGATGGAATAAACTAGAAATTGATTTTTCTTGTTTAATTGTGTTGG 838
||||||||| |||||||||||||| | | |||| |||||||||||| |||||||
Sbjct 783 TTTACTACTGCAAAGGATGGAATA---T-----T-GATTCTTCTTGTTTAATCGTGTTGG 833
Query 839 ACTTTTGTTTGAATAAATGATTTTGTTTTAAGGGGCACAAA--CCCAAAAAAGTTTCTTG 896
|||||||||||||||||||||||||||| || ||||||||| |||| ||||||||||||
Sbjct 834 ACTTTTGTTTGAATAAATGATTTTGTTT-AACGGGCACAAAAACCCACAAAAGTTTCTTG 892
Query 897 TGTTCATATCTCTGCACCTTTGTTTTTGGGTATGACTTTGTTGTGTTGAGAAACTAAGTT 956
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 893 TGTTCATATCTCTGCACCTTTGTTTTTGTGTATGACTTTGTTGTGTTGAGAAACTAAGTT 952
Query 957 GGAATCTATTTAAGGTTTCGTTT 979
||||| | |||||||||||||||
Sbjct 953 GGAATTTCTTTAAGGTTTCGTTT 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47923376238
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5