BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494280
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47000.1 | Symbols: | Peroxidase superfamily protein | chr5... 2084 0.0
> AT5G47000.1 | Symbols: | Peroxidase superfamily protein | chr5:19068944-19070333
REVERSE LENGTH=1390
Length=1390
Score = 2084 bits (1128), Expect = 0.0
Identities = 1316/1404 (94%), Gaps = 24/1404 (2%)
Strand=Plus/Plus
Query 1 CTCTTCTTAGTAACCTCCTAAGCCATGAAATAGTCGCCAAA-GCCTTTTTCTTCTTCTTT 59
|||||||||||||||||||||||||||||||||||| |||| ||| ||||||| ||||
Sbjct 1 CTCTTCTTAGTAACCTCCTAAGCCATGAAATAGTCG-CAAAGGCC-CTTTCTTCGTCTTC 58
Query 60 GTTTCTAATTGCTTTCTACGACAATCGATCGTGGAGAAGTCTACCTCGTAGAC--CTCTC 117
|||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||
Sbjct 59 GTTTCTAATTGCTTTCGACGACAATCGATCGTAGAGAAGTCTACCTCGTAGACATCTCTC 118
Query 118 TCTCAAA-CCAAATTCAATTACCATTGTTTG---TTATCTGATGTCGAATATGCAATTCT 173
|| |||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 119 TCACAAATCC-AATTCAATTACCATTGTTTGTTATTATCTGATGTCGAATATGCAATTCT 177
Query 174 CTCGTAGTTTTAATCCCTTTGTTCTCCTCTTCTGTCTCGCCGTTGTTGTACCAACTATAT 233
||||| ||||||||||||||||| ||||||||||||||||||| |||| ||||| |||||
Sbjct 178 CTCGTGGTTTTAATCCCTTTGTTATCCTCTTCTGTCTCGCCGTGGTTGCACCAATTATAT 237
Query 234 CGGCTGATGTCGCTATCTTGAGAACGGACTATTACCAAAAAACATGTCCTGATTTCAACA 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 238 CGGCTGATGTCGCTATCTTGAGAACGGACTATTACCAAAAAACATGTCCTGATTTCCACA 297
Query 294 AAATCGTGCGTGAAGCCGTTACAACCAAACAAGTTCAACAACCAACAACTGCGGCCGGGA 353
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 298 AAATTGTGCGTGAAGCCGTTACAACCAAACAAGTCCAACAACCAACAACTGCGGCCGGGA 357
Query 354 CACTCCGTCTCTTTTTCCACGATTGTTTCCTTGAAGGTTGTGATGCATCCGTCTTGATCG 413
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 358 CCCTCCGTCTCTTTTTCCATGATTGTTTCCTTGAAGGTTGTGATGCATCTGTCTTGATCG 417
Query 414 CGACCAACTCGTTTAACAAAGCGGAACGTGATGATGATCTCAATGATTCCCTCCCGGGAG 473
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 418 CGACCAACTCGTTCAACAAAGCGGAACGCGATGATGATCTCAATGATTCCCTCCCGGGAG 477
Query 474 ATGCTTTTGACATCGTCACTCGCATCAAGACAGCTCTCGAGCTGTCTTGTCCTGGTGTAG 533
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 478 ATGCTTTTGACATCGTCACCCGCATCAAGACAGCTCTCGAGTTGTCTTGTCCTGGTGTAG 537
Query 534 TGTCTTGCGCAGATATCCTAGCGCAGGCTACACGTGACCTTGTCACAATGGTAGGAGGAC 593
| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TATCATGCGCGGATATTCTAGCGCAGGCTACACGTGACCTTGTCACAATGGTAGGAGGAC 597
Query 594 CTTACTTTGACGTAAAGCTTGGTCGTAAAGACGGATTCGAATCCAAAGCCCATAAAGTCC 653
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 598 CTTACTTTGACGTAAAGCTTGGTCGTAAAGACGGATTCGAATCCAAAGCTCATAAAGTCA 657
Query 654 GAGGAAACGTCCCAATGGCAAACCAGACCGTTCCCGACATCCACGGGATATTCAAGAAAA 713
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 658 GAGGAAATGTCCCAATGGCAAACCAGACTGTTCCTGACATCCACGGGATATTCAAGAAAA 717
Query 714 ACGGGTTCACTCTTCGCGAGATGGTAGCATTAAGCGGCGCTCACACCATTGGATTCTCTC 773
|||| || | ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 718 ACGGTTTTAGTCTTCGCGAGATGGTAGCATTAAGCGGGGCTCACACCATTGGATTCTCTC 777
Query 774 ACTGCAAAGAGTTTGCCGACAGGCTTTACGGATCCAAAGCTGATAAAGAAATCAACCCGC 833
|||||||||||||| ||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 778 ACTGCAAAGAGTTTTCCGACAGACTCTACGGATCCCGTGCTGATAAAGAAATCAACCCGC 837
Query 834 GATTTGCAGCTGCTCTCAAAGATCTCTGCAAAAATCACACCGTGGATGACACAATCGCCG 893
|||| ||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 838 GATTCGCAGCCGCTCTCAAAGATCTTTGCAAAAACCACACCGTGGATGATACAATCGCCG 897
Query 894 CGTTTAATGACGTGATGACTCCGGGAAAATTCGACAACATGTACTTCAAGAACCTAAAGC 953
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 898 CGTTTAACGACGTGATGACTCCAGGAAAGTTCGACAACATGTACTTCAAGAACCTAAAGC 957
Query 954 GAGGGCTAGGGCTTCTAGCTTCCGACCATATCCTTATTAAAGACAACAGCACCAAGCCGT 1013
|||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 958 GAGGGCTAGGGCTTTTAGCGTCTGACCACATCCTTATTAAAGACAACAGCACCAAGCCGT 1017
Query 1014 TTGTGGATCTATACGCAACTAACGAGACAGCATTCTTTGAGGATTTCGCTCGTGCGATGG 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TTGTGGATCTATACGCAACTAACGAGACAGCATTCTTTGAGGATTTCGCTCGTGCGATGG 1077
Query 1074 AGAAACTTGGCACGGTCGGTGTCAAGGGCGATAAAGAAGGAGAAGTGAGACGTAGGTGCG 1133
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1078 AGAAACTTGGCACGGTCGGCGTCAAGGGCGATAAAGATGGAGAAGTGAGACGTAGGTGCG 1137
Query 1134 ACCACTTCAATAATCTCAACGTTTAAGAAGAAAAAGAAAACACAAAACAATATAAATATA 1193
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1138 ACCACTTCAACAATCTCAACGTTTAAGAAGAAAAAGAAAACACAAAACCATATAAATATA 1197
Query 1194 ATATTATT-CGGTTTTTTATTTGCGG-GGAGATATTGATGAGAAGAAAGGTTTGGTTGGT 1251
|||||||| | ||||| |||||||| |||| | | || |||||||||||||||||||||
Sbjct 1198 ATATTATTTCTGTTTT--ATTTGCGGAGGAG-T-T-GAGGAGAAGAAAGGTTTGGTTGGT 1252
Query 1252 ATATATGTTTAATAACTATCGTATCATAAGGAAGATCGTGTAACAATTCAAGATGGGATG 1311
|||||||||||||||||| | ||| ||||| |||||| |||||||||||||| |||||||
Sbjct 1253 ATATATGTTTAATAACTACC-TATTATAAGCAAGATCTTGTAACAATTCAAGTTGGGATG 1311
Query 1312 TTTAATTTTTCCAT-AAAATATGCAAACTGTTGTATTGAAAGTATATAGATAAAAAATAA 1370
|||||||||||||| ||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 1312 TTTAATTTTTCCATGAAAAT-T-CAAACTGTTGTATTGAAAGTATATAGATAAAA--TAA 1367
Query 1371 ACATATTATATATCGAACAGTTGT 1394
|||||||||||||||||| ||||
Sbjct 1368 -CATATTATATATCGAACAATTGT 1390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68674345560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5