BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494284
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46940.1 | Symbols: | Plant invertase/pectin methylesterase... 948 0.0
AT5G46960.1 | Symbols: | Plant invertase/pectin methylesterase... 183 1e-45
> AT5G46940.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr5:19058168-19058814 REVERSE
LENGTH=647
Length=647
Score = 948 bits (513), Expect = 0.0
Identities = 583/617 (94%), Gaps = 4/617 (1%)
Strand=Plus/Plus
Query 1 TGCTTCCTTAAAGAAAAGAAAAATGAAATTTTTGCTTTACCTTGTTACGTTCTTTGTTCT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 33 TGCTTCCTCAAAGAAAAGAAAAATGAAATTTTTGCTTTACCTTGTTACGTTCTTTGTTCT 92
Query 61 CTTAAACGGTTTCGCAACCGCTCAAACTCTGATTCGAAATTCTTGCAAAAAAGCTGCAGC 120
|| ||||||||| |||| || |||||| ||||||||||||||||||| |||||| ||||
Sbjct 93 CTCAAACGGTTTGGCAAACGGACAAACTTTGATTCGAAATTCTTGCAAGAAAGCTACAGC 152
Query 121 TACAAACCCGAAGTTCAAATACAATCTATGCGTCACGTCTCTCGAAACAAATCCGCAGAG 180
||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
Sbjct 153 TACAAGCCCGAAGTTCAAATACAATCTATGTGTCACGTCTCTCGAAACCAATCCGCAG-G 211
Query 181 -CAAAGCCGCAAAAGATCTCGCCGGATTAGTCATGGCATCGACGAAAAACGCCGTGACTA 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 212 CCAAAACCGCAAAAGATCTCGCCGGATTAGTCATGGCATCGACGAAAAACGCCGTGACCA 271
Query 240 AAGCGACTAGCTTGAAAGGAACCGTTGACAAGATTCTCAAAGGGAAGAAATTTAACAAGA 299
||||||| | |||||||||||| |||||||||||| |||| ||||||||| |||||||||
Sbjct 272 AAGCGACGACCTTGAAAGGAACTGTTGACAAGATTATCAAGGGGAAGAAAGTTAACAAGA 331
Query 300 TGACTG-AGATGCCGTTACGTGATTGCCTCCAGCTTTATACCGATGCTATTGGTTCTTTA 358
|||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 332 TGACTGCA-ATGCCGTTACGTGATTGCCTTCAGCTTTATACCGATGCTATTGGTTCTTTA 390
Query 359 AACGAAGCTTCAGCGGGCGTTAAATCGCGTAATTACCCAACCGTTAAAACGGTTCTGAGT 418
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 AACGAAGCTTTAGCGGGCGTTAAATCGCGTAATTACCCAACCGTTAAAACGGTTCTGAGT 450
Query 419 GCTGCAATGGATGCACCAAGTACTTGTGAAACTGGATTCAAAGAAAGAAAAGCGCCATCT 478
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 GCTGCAATGGATACACCAAGTACTTGTGAAACTGGATTCAAAGAAAGAAAAGCGCCATCT 510
Query 479 CCCGTTACGAAAGAGAACGATAATTTGTATCAGATGATTCTGATTCCTTTAGCTTTTACA 538
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 511 CCGGTTACGAAAGAGAACGATAATTTGTATCAGATGATTCTGATTCCTCTAGCTTTTACA 570
Query 539 AATATGTTGAAATGAAATTACTAAAAAGTGTATTAACACATTGGATTAAAGATAATAATA 598
|||||||||||||||||| || ||||| ||||||||||||| ||||||||||||||| ||
Sbjct 571 AATATGTTGAAATGAAATCACCAAAAATTGTATTAACACATCGGATTAAAGATAATAGTA 630
Query 599 CTGATAATGTACCTTAG 615
|||||||||||||||||
Sbjct 631 CTGATAATGTACCTTAG 647
> AT5G46960.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr5:19062174-19062780 REVERSE
LENGTH=607
Length=607
Score = 183 bits (99), Expect = 1e-45
Identities = 418/566 (74%), Gaps = 45/566 (8%)
Strand=Plus/Plus
Query 13 GAAAA-GAAAAATGAAATTTTTGCTTTACCTT-GTTA-CGTTCTTTGTTCTCTTAAACGG 69
||||| ||||||||| || ||| ||| | || |||| | |||| | || ||||||||||
Sbjct 26 GAAAACAAAAAATGAAGTTCTTGGTTT-CATTGGTTATC-TTCTCTCTTTTCTTAAACGG 83
Query 70 TTTCGCAACCGCTCAAACTCTGATTCGAA-ATTCTTGCAAAAAAGCTGCAGCTACAA-AC 127
||||||||||||||||||||| |||| || |||||||||| |||||| || | || ||
Sbjct 84 TTTCGCAACCGCTCAAACTCTCATTC-AAGATTCTTGCAAGAAAGCTTTTGCGA-AAGAC 141
Query 128 CCG-AAGT-TCAAATACAATCTATGCGTCACGTCTCTCGAAACAA-ATCCGCAGAGCAAA 184
||| || | ||| ||| || | ||||||| ||||| | |||| |||| || ||||||
Sbjct 142 CCGCAATTGTCA--TACGATTTCTGCGTCAATTCTCTT-ACACAAGATCCACAAAGCAAA 198
Query 185 GCCGCAAA-AGATCTCGCCGGATTAGTCATGGCATCGACGAAAAACGCCGTGACTAAAG- 242
||||| | | ||||| | || ||| | ||||||||||| | ||| | | | |||
Sbjct 199 GCCGCGACTAC-TCTCGAAAGTTTGGTCCTAGCATCGACGAAGACCGCTGCGGCAAAAAT 257
Query 243 CGACTAGCTTGAAAGGAACCGTTG-ACAAGATTCTCAAAGGGAAGAAATTTAACAAGATG 301
| || | ||||||||||| ||||| ||| ||| ||||||| ||| || | || |||
Sbjct 258 C-ACGAACTTGAAAGGAATCGTTGCACAGGAT-CTCAAAGACCAGAGATAT--CAGGAT- 312
Query 302 ACTGAG-ATGCCGTTACGTGATTGCCTCCAGCTTT-ATACCGATGCTATTGGTTCTTTAA 359
| || | | | | ||| ||||||| | ||| ||| |||||||| || | |||||
Sbjct 313 ATTGTGGAAGAC-TTAAAACTTTGCCTCG-GATTTTATAACGATGCTAATGATGATTTAA 370
Query 360 ACGAA--GCTTCAGCGGGCGTTAAATCGCGTAATTACCCAAC-CGTTAAAACGGTTCTGA 416
| || |||| |||| | ||||||||||| |||| | || || ||| | |||||
Sbjct 371 -C-AACTGCTTTAGCGAACATTAAATCGCGTGATTATC-AAGGCGCTAACATTAATCTGA 427
Query 417 GTGCTGCAATGGATGCACCAAGTACTTGTGAA-ACTGGATT-CAAAGAAAG-AAAAGCGC 473
||||||| |||||| |||| | | ||| || | || ||| ||| ||| | |||| |
Sbjct 428 GTGCTGCTTTGGATGTACCAGGCAATTGCGAGGA-TG-ATTTCAAGGAA-GCAAAAAAGA 484
Query 474 CATCTCCCG-TTACGAAAGAGAAC-GATAATTTGTATCAGATGATTCTGATTCCTTTAGC 531
| ||||| | |||| || |||||| | || ||||| | ||| |||| |||||||||| ||
Sbjct 485 CGTCTCC-GATTACCAACGAGAACAG-TATTTTGTTTAAGACGATTTTGATTCCTTTGGC 542
Query 532 TTTTACAAATATGTTGAAATGAAATT 557
|||||| ||||||||| ||| |||||
Sbjct 543 TTTTACTAATATGTTGTAAT-AAATT 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29638146730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5