BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494287
Length=474
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46890.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 660 0.0
AT5G46900.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 555 2e-157
> AT5G46890.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr5:19036296-19036916
REVERSE LENGTH=621
Length=621
Score = 660 bits (357), Expect = 0.0
Identities = 442/482 (92%), Gaps = 10/482 (2%)
Strand=Plus/Plus
Query 1 ACACAACACATCACAAGCTCGATAAAGAGAGAGTTTTAAGGGTTTTCTTGTACCTTTTAT 60
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1 ACACAACACATCAAAAGCTTGATAAAGAGAGAGTTTTTAGGGTTTTCTTGTACCTATTAT 60
Query 61 AAGAATTACTCTTATTGAAACTTTACTTCTTTC-TCAATGGCTTATTCTAAGATTGCTCT 119
||||| |||||| | |||||||||||||| ||| |||||||||||||||||| |||| ||
Sbjct 61 AAGAAATACTCTAACTGAAACTTTACTTC-TTCATCAATGGCTTATTCTAAGGTTGCCCT 119
Query 120 TCTCCTCCTCTTCAATGTCATCTTCTTCACTTTCGTCAGCTCGACATCAGTCCCTTGTCC 179
||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 120 TCTCCTCGTCTTCAATGTCATCTTCTTCACTTTCGTCAGCTCGACTTCGGTCCCTTGTCC 179
Query 180 ACCACCACCGCCCAAGA--AACC-C-TCAA--CTTCATCTCCTAAC-CACAAACCCACTT 232
||||||||||||||||| ||| | || | || | || | | | ||||||||||
Sbjct 180 ACCACCACCGCCCAAGAGCTACCACAAGAAGCCCGCAACGCC-ATCTCTTAAACCCACTT 238
Query 233 GTAAAGACGCTCTTAAACTTAAGGTGTGCGCTAACGTGTTGGATTTGGTCAAGGTTTCTC 292
||||||||||||||||||||||||| || ||||||||||||||| |||| ||||||||||
Sbjct 239 GTAAAGACGCTCTTAAACTTAAGGTATGTGCTAACGTGTTGGATGTGGTTAAGGTTTCTC 298
Query 293 TACCACCAACGTCCAAATGTTGCGCTCTTATCAAAGGTCTAGTTGATCTTGAAGCGGCGG 352
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 299 TACCACCAACGTCCAACTGTTGCGCTCTTATCAAAGGTCTAGTTGATCTTGAAGCCGCGG 358
Query 353 TCTGTCTTTGCACCGCCCTAAAGGCTAATCTTCTTGGTATCAACCTTAATGTTCCCATTT 412
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 359 TCTGTCTTTGCACTGCCCTAAAGGCTAATGTTCTTGGTATCAACCTTAATGTTCCCATTT 418
Query 413 CTTTGAACGTTGTCCTAAACCATTGTGGTAAGAAGGTTCCATCTGGTTTCAAATGTGCCT 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTTTGAACGTTGTCCTAAACCATTGTGGTAAGAAGGTTCCATCTGGTTTCAAATGTGCCT 478
Query 473 AG 474
||
Sbjct 479 AG 480
> AT5G46900.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr5:19039701-19040402
REVERSE LENGTH=702
Length=702
Score = 555 bits (300), Expect = 2e-157
Identities = 369/401 (92%), Gaps = 10/401 (2%)
Strand=Plus/Plus
Query 82 TTTACTTCTTTCTCAATGGCTTATTCTAAGATTGCTCTTCTCCTCCTCTTCAATGTCATC 141
|||||||| | ||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 51 TTTACTTCCTCCTCCATGGCTTATTCTAAGATTGCTCTTCTCCTCATCTTCAATGTCATC 110
Query 142 TTCTTCACTTTCGTCAGCTCGACATCAGTCCCTTGTCCACCACCACCGCCCAAGA--AAC 199
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 111 TTCTTCACTTTAGTCAGCTCGACTTCAGTCCCTTGTCCACCACCACCGCCCAAGAGCCAC 170
Query 200 C-C--TCAA-CTTCATCTCCTAAC-CAC-AAACCCACTTGTAAAGACGCTCTTAAACTTA 253
| | || | || | || | | | | |||||||||||||||||||||||||||||||
Sbjct 171 CACAAGAAACCCGCAACGCC-ATCTC-CTAAACCCACTTGTAAAGACGCTCTTAAACTTA 228
Query 254 AGGTGTGCGCTAACGTGTTGGATTTGGTCAAGGTTTCTCTACCACCAACGTCCAAATGTT 313
|||| || |||||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 229 AGGTATGTGCTAACGTGTTGGATTTGGTTAAGGTTTCTCTGCCACCAACGTCCAACTGTT 288
Query 314 GCGCTCTTATCAAAGGTCTAGTTGATCTTGAAGCGGCGGTCTGTCTTTGCACCGCCCTAA 373
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 289 GCGCTCTTATCAAAGGTCTAGTTGATCTTGAAGCCGCGGTCTGTCTTTGCACTGCCCTAA 348
Query 374 AGGCTAATCTTCTTGGTATCAACCTTAATGTTCCCATTTCTTTGAACGTTGTCCTAAACC 433
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AGGCTAATGTTCTTGGTATCAACCTTAATGTTCCCATTTCTTTGAACGTTGTCCTAAACC 408
Query 434 ATTGTGGTAAGAAGGTTCCATCTGGTTTCAAATGTGCCTAG 474
|||||||||||||||||||||||||||||||||||||||||
Sbjct 409 ATTGTGGTAAGAAGGTTCCATCTGGTTTCAAATGTGCCTAG 449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22555132003
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5