BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494291
Length=1312
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46860.1 | Symbols: VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | Syn... 1860 0.0
> AT5G46860.1 | Symbols: VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | Syntaxin/t-SNARE
family protein | chr5:19012021-19014004 REVERSE
LENGTH=1337
Length=1337
Score = 1860 bits (1007), Expect = 0.0
Identities = 1206/1298 (93%), Gaps = 30/1298 (2%)
Strand=Plus/Plus
Query 28 AACGCTTTTCAATTTTTCGTCTATCTGTCTCCACGATCCACGCCTTGACCTTCGtttttt 87
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 AACGCTTTTCAA-TCTTCGTCTATCTGTCTCCACGATCCACGCCTTGACCTTCGTTTTTT 115
Query 88 ttttCTC-------AGAGAAAACTCCGATAAGCAATTTCTCAATCTCGTCGTAGATCGAA 140
||||||| ||||||||||||||||| |||||||||||||| | ||||||| ||
Sbjct 116 TTTTCTCAGAGATTAGAGAAAACTCCGATAACCAATTTCTCAATCTTTTTGTAGATCCAA 175
Query 141 CTTTTCCA-GaaaaaaaGAGTGGTTTCACGAAGAAGATGAGTTTTCAAGATTTAGAATCG 199
||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 176 TTTTTCCAGGAAAAAAAGA--GGTTTCGCGAAGAAGATGAGTTTTCAAGATTTAGAATCA 233
Query 200 GGAAAAGGAAGATCGACGAGGAAGA-TCAATGGTGGTCGACAAGATTCGACACAAGCCGT 258
|||| ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 234 GGAAGAGGAAGATCAACGAGGAA-ATTCAATGGTGGTCGACAAGATTCGACACAAGCCGT 292
Query 259 TGCTTCTGGAATTTTCCAGATCAATACCGGAGTCTCCACGTTTCAACGACTCGTTAACAC 318
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 293 TGCTTCTGGAATATTCCAGATCAATACCGGAGTCTCCACGTTTCAGCGACTCGTTAACAC 352
Query 319 ACTTGGTACTCCTAGAGATACACCGGAGCTCCGGGAGAAGCTGCACAAGACAAGATTGCA 378
|||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 353 ACTTGGTACTCCCAAAGATACACCGGAGCTCCGGGAGAAGCTGCACAAGACAAGGTTGCA 412
Query 379 TATTGGACAGCTTGTGAAGGATACTTCAGCTAAACTTAAA-ATAGCTAGTGAAACTGATC 437
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 413 TATTGGACAGCTTGTGAAGGATACTTCAGCTAAACTTAAAGA-AGCTAGTGAAACTGATC 471
Query 438 ATCAAAGTGGTGTCAATCCAAGTAAGAAGATTGCAGATGCTAAGCTTGCAAGGGACTTTC 497
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 ATCAAAGCGGTGTCAATCCAAGTAAGAAGATTGCAGATGCTAAGCTTGCAAGGGACTTTC 531
Query 498 AAGCTGTTTTAAAAGAGTTTCAGAAAGCTCAACAAACTGCTGCTGAAAGAGAAACCACTT 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 AAGCTGTTTTAAAAGAGTTTCAGAAAGCTCAACAAACTGCTGCTGAAAGAGAAACCACTT 591
Query 558 ATACTCCTTTCGTGCCTCAATCCGCTCTTCCCTCTAGTTATACGGCGGGTGAGGTAGATA 617
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 592 ATACTCCTTTCGTGCCTCAATCTGCTCTTCCCTCTAGCTATACGGCGGGTGAGGTGGATA 651
Query 618 AGGTCCCGGAACAGCGGGCACAAGTTCAGGAGTC-AAAGAGGCAGGAACTTGTATTGTTA 676
|||| |||||||||||||||||| |||||||||| ||| || || |||||||||||||||
Sbjct 652 AGGTACCGGAACAGCGGGCACAACTTCAGGAGTCGAAA-AGACAAGAACTTGTATTGTTA 710
Query 677 GACAACGAGATTGCATTCAATGAAGCTGTGATCGAAGAAAGAGAGCAAGGAATACAAGAA 736
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 711 GACAACGAGATTGCATTCAACGAGGCTGTGATTGAAGAAAGAGAGCAAGGAATACAAGAA 770
Query 737 ATCCATCATCAGATTGGCGAGGTTAACGAGATATTCAAAGATCTTGCGGTTCTGGTTAAT 796
|||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 771 ATCCATCAGCAAATTGGTGAGGTTAACGAGATATTCAAAGATCTTGCGGTTCTGGTTAAC 830
Query 797 GATCAAGGAGTCATGATAGATGATATCGGTACTCACATTGACAACTCCCGTGCTGCAACT 856
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 831 GATCAAGGAGTCATGATAGATGATATTGGTACTCACATTGACAACTCCCGTGCTGCAACT 890
Query 857 TCACAAGGAAAATCTCAGCTGGCGCAAGCCGCGAAAACACAAAGATCAAACTCATCTCTG 916
|||||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||
Sbjct 891 TCACAAGGAAAATCTCAGCTTGTGCAAGCCGCGAAAACACAAAAATCAAACTCCTCTCTG 950
Query 917 ACATGCTTGCTCTTGGTGATATTTGGCATTGTTCTCCTGATCGTGATTATCGTACTTGCG 976
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 951 ACATGCTTGCTCTTGGTGATATTTGGCATTGTTCTCCTGATCGTGATTATAGTACTCGCA 1010
Query 977 GCTTGATTTCGAAAGAGCAACAACAAGTCGCTTGGGTGTGTTCATCGATTTTAAAGCATC 1036
||||||||||||| ||||| |||| ||| ||| |||||||||| ||| |||| |||||
Sbjct 1011 GCTTGATTTCGAAC-AGCAAGAACATTTCGTTTGTGTGTGTTCATTGATCTTAAGGCATC 1069
Query 1037 GAA-GAGTTGAACTACTTGGTATATAATATATGTTGAAGACAACACTTAGAAGTTGGTTT 1095
|| || | ||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1070 -AATGACTGGAACTACTTGGTATATATTATATGTTGAAGAGAACACTTAGAAGTTGGTTT 1128
Query 1096 TGTGTTGGTTTGGTTTGGTTC-GATTCGGTTTGAAGGTTCTATTGGTTAATGTAATAGTG 1154
|||||| |||||| ||||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 1129 TGTGTTTGTTTGGGTTGGTTCAG-TTCGGTTTGA-GGTTCTATTGGTTAATGTAATAGTG 1186
Query 1155 TGTGCGTGTGCGTGTGGCTTTTTTGTTGTGTAAACATTTTGTTGGAGATGACAGAAATTC 1214
|||||||||| || | ||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1187 TGTGCGTGTG--TG-G-CTTTTTTGTTGTGCAAACATTTTGTTGGAGATGACAGAAACTC 1242
Query 1215 TGTTTTGTTTGTGATTCTCCTAAGTCCTAAATCTAAATCTCTGTTGAGAGGAAACAAAAA 1274
|||||||||||||||||||||| || || |||||||| |||||||||||||||||||
Sbjct 1243 TGTTTTGTTTGTGATTCTCCTATGTTCTC---CTAAATCTTTGTTGAGAGGAAACAAAAA 1299
Query 1275 CGATTTGCTCAATGACTGTCACAAAGAAGTTTGAAACC 1312
| ||||||||||||| ||||||||||||||||||||||
Sbjct 1300 CTATTTGCTCAATGAGTGTCACAAAGAAGTTTGAAACC 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64557900870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5