BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494293
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2399 0.0
> AT5G46840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19005601-19007770 FORWARD LENGTH=1717
Length=1717
Score = 2399 bits (1299), Expect = 0.0
Identities = 1538/1645 (93%), Gaps = 50/1645 (3%)
Strand=Plus/Plus
Query 1 ctctctctctctcttcctcttctctcATTGAAATCGGACGACGATGGGGAAGAAGAAGTC 60
||||| |||| ||||||||||||||||||||||||| |||| ||||||||||||||| ||
Sbjct 8 CTCTCCCTCTTTCTTCCTCTTCTCTCATTGAAATCGAACGAGGATGGGGAAGAAGAAATC 67
Query 61 GAAGGAAACGGAGACGGAATCTCTAAACGATGAATCTCAGACCAAATCAGGCATCTTCTC 120
||||| ||||||| ||||||||| |||||||||||||||| | || ||||||||
Sbjct 68 GAAGGTAACGGAGCCGGAATCTCAAAACGATGAATCTCAG-----A-CA---ATCTTCTC 118
Query 121 TACTCTCTTCTCCGGCGAGGTTGCTAAAGGCGAAACTTCTGGCTTTGCGAGTCTCTTCTC 180
|||||||||||||||||||||| ||| | | |||||||||||||||||||||||
Sbjct 119 CACTCTCTTCTCCGGCGAGGTTG--AAA---G---C-TCTGGCTTTGCGAGTCTCTTCTC 169
Query 181 CGATGATAACCCTTTCCGGCGaaaaaaaCCTCAAGAAATCAAAGAGTCGTCAAGTCCCGA 240
|| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 170 CGCTGATAACCCTTTCCGGCGAAAACAACCTCAAGAAATCAAAGAGTCGTCAATTCCTGA 229
Query 241 TGAGAAGAAAGGGGATAAACGAAATGCAGAGAACGAAGAAG--G-AGAAGAAACAGTTTT 297
||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 230 TGAGAAGAAAGGGGATAAACGAAATGCAGAGAACGAAGAAGAAGAAGAAGAAACAGATTT 289
Query 298 GCCTGTGAAGACGAAGAAATCTAAAAAGGAGAAAAAA-CTTACAGATTCCGGCGACGATG 356
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 290 GCCTGTGAAGACGAAGAAATCTAAAAAGGA-AAAAAAGCTTACAGATTCCGGCGAC---- 344
Query 357 GTGTTGAGAAAGAGACGAATTT-GGATGTTGTAGAAGAAACTGGGTTGGATTCAAAGAGG 415
|||||||||||| |||| ||| | ||||||||||| |||||||| ||||||||||
Sbjct 345 -----GAGAAAGAGACG-ATTTCGGAGGCTGTAGAAGAAAGTGGGTTGGTTTCAAAGAGG 398
Query 416 AAGAAAAGgaagagagatgagattgagaacgaatacgagacgaagaagtatggaagcgtt 475
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 AAGAAGAGGAAGAGAGATGAGATTGAGAACGAATACGAGACGAAGAAGTATGGAAGCGTT 458
Query 476 --ga-g--a-agaagaaggttggtgagaagaggaagaaagctgatgaagTAGCTGATACA 529
|| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 GAGATGAAAGAGAAGAAGGTTGGTGAGAAGAGGAAGAAAGCTGATGAAGTAGCTGATACA 518
Query 530 ATGGTTTCAAAGGAAGGTTTTGATGATGAGAGTAAGCTTCTTAGAACTGTTTTCGTTGGG 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ATGGTTTCAAAGGAAGGTTTTGATGATGAGAGTAAGCTTCTTAGAACTGTTTTCGTTGGG 578
Query 590 AATTTGCCATTGAAGGTTAAGAAAAAAGTCATCTTGAAGGAATTTAGTAAATTCGGTGAG 649
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 579 AATTTGCCTTTGAAGGTTAAGAAAAAAGTCATCTTGAAGGAGTTTAGTAAATTTGGTGAG 638
Query 650 GTTGAATCTGTGAGGATACGCTCTGTGCCAATTGTCGATTCGAAGAGGACAAGGAAAGGA 709
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 639 GTTGAATCTGTGAGGATACGCTCTGTGCCTATTGTTGATTCGAAGAGGACAAGGAAAGGA 698
Query 710 GCTATTATGTTGAAACAAATCAATGAGAAAGCTTCAAGTGTTCATGCTTATGTTGTGTTT 769
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 GCTATAATGCTGAAACAAATCAATGAGAAAGCTTCAAGTGTTCATGCTTATGTTGTGTTT 758
Query 770 GAAACAGAGCAATCTGCTG-AGGCTTCTCTGGCTCATAACATGTCTCTGATTGATGGGAA 828
||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct 759 GAAACAGAGCAATCTGCTGCAG-CTTCTCTGGCACATAACATGTCTCTGATTGATGGGAA 817
Query 829 TCATGTCCGCGTTGATAGAGCATGTCCGCCTCGTAAGAAACAGAAAGGTCAGGATGATAC 888
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 818 TCATGTCCGCGTTGATAGAGCATGTCCGCCTCGTAAGAAACAGAAAGGGCATGATGATAC 877
Query 889 TCATTTGTATGATCCTAAGAGGACAGTCTTTATGGGTAATCTCCCTTTTGATGTGAAGGA 948
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 878 TCATTTGTATGATCCTAAGAGGACAGTCTTTATGGGTAATCTCCCTTTCGATGTGAAGGA 937
Query 949 CGAGGAAGTGTATCAACTGTTTACGGGTAAGAGTAATCTGGAGAACAGTATAGAAGCTGT 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 CGAGGAAGTGTATCAACTGTTTACGGGTAAGAGTAATCTGGAGAACAGTATAGAAGCTGT 997
Query 1009 TCGTGTTATTAGAGATCCTCACTTGAACATTGGGAAAGGAATAGCTTACGTCTTGTTTAA 1068
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 TCGTGTCATTAGAGATCCTCACTTGAACATTGGGAAAGGAATAGCTTACGTCTTGTTTAA 1057
Query 1069 AACACGGGAAGCTGCAAATCTCGTAATCAAGAAAGGATATTTGAAGCTTAGAGAAAGAGA 1128
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1058 AACACGGGAAGCTGCAAATCTCGTACTCAAGAAAGGATACTTGAAGCTTAGAGAAAGAGA 1117
Query 1129 GTTACGGATTTCTCGAGTCAAACCTGATGCAACGCCATCAAAGAGAAAGAGCAATCCTTC 1188
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||
Sbjct 1118 GTTACGGATTTCTCGAGTCAAACCTGAT--A-CGCCATCAAAGAGAAAGAGCAATCCGTC 1174
Query 1189 TGAAGCTTACTCGCCGGCCCAGAAAAGACTGCAAAAGGACAAAGTGGTCACACCAACTCC 1248
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1175 TGAAGCTTACTCGCCGGCCCAGAAAAGACTGCAGAAGGACAAAGTGGTCACACCAACTCC 1234
Query 1249 TACGGGGAAGGCTAATCTTTCATATCAAGGTGTAAGAGCTTCAAAATCTGGTGATGATAA 1308
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1235 AACAGGGAAGGCTAATCTTTCATATCAAGGTGTACGAGCTTCAAAATCTGGTGATGATAA 1294
Query 1309 GAAGA-ATCCTTATCAGAAAAGCCCCGCACAGGCAAAGATGAGACCTAGAGGTAGCAGCA 1367
||| | | ||||||||||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 1295 GAAAACA-CCTTATCAGAAAAGCTCCGCGCAGACAAAGATGAGACCTAGAGGTAGCAGCA 1353
Query 1368 GCAATGAAGACAACAAAAAATCTGGGAATAATAGTGCTTTGAAGCAGCGAAGTCAGAAGC 1427
||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 1354 GCAATGA---CAACAAAAAATCTGGGAATAATAGTGCTTCAAAGGAAAGAAGTCAGAAGC 1410
Query 1428 GGCCAGCGGTTGCAGCAAGAAAGGCGAAAGCAAACTCAAAAGGTTCGAAAGAGAGCGGTG 1487
| ||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1411 GACCAGCTGTTGCAGCAAGAAAGGCGAAAGCAAACGCAAAAGGTTCAAAAGAGAGCGGTG 1470
Query 1488 GTAAGCGATTTGCAGGGACTAAGCGTAAACAAGAAAACCGAACGCCTGAAAGCTTCTCTA 1547
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1471 GTAAGCGGTTTGCAGGGACAAAGCGTAAACAAGAAAACCGGACGCCTGAAAGCTTCTCTA 1530
Query 1548 AGAAGAAGAAAACAAAACGGTTTTAGGCGGTTTCTTTCAACCATAATGGTGAACCTCTTT 1607
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1531 AGAAGAAAAAAACAAAACGGTTTTAGACGGTTTCTTTCAACCATAATGGTGAACCTCTTT 1590
Query 1608 CATCTTCCTTAGTTTTGATACTAGT 1632
| |||||||||||||||||||||||
Sbjct 1591 CTTCTTCCTTAGTTTTGATACTAGT 1615
Score = 93.5 bits (50), Expect = 6e-18
Identities = 52/53 (98%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1633 TGATATACTGTAATGTTGCAACAATTATGATTTCGTGCAAGTTTAAAAGGAAA 1685
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1652 TGATATACTGTAATGTTGCAACAATTATGTTTTCGTGCAAGTTTAAAAGGAAA 1704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83282704155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5