BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494297
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46800.1 | Symbols: BOU | Mitochondrial substrate carrier fa... 1677 0.0
> AT5G46800.1 | Symbols: BOU | Mitochondrial substrate carrier
family protein | chr5:18988631-18990772 REVERSE LENGTH=1331
Length=1331
Score = 1677 bits (908), Expect = 0.0
Identities = 1045/1111 (94%), Gaps = 10/1111 (1%)
Strand=Plus/Plus
Query 157 ACCTTTATCGGATCCATCTGATCTCGAGTGGATTTTCTCTAATCAATCCCTGGTAGAAAT 216
|||||| ||||||||||||||| |||| |||||| |||||||||||| | || |||||
Sbjct 227 ACCTTTCTCGGATCCATCTGATATCGATTGGATTCTCTCTAATCAAT--C--GTTGAAAT 282
Query 217 GGCGGATGCGTGGAAGGATTTAGCTTCAGGGACTGTTGGAGGAGCGGCTCAGCTAGTTGT 276
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 283 GGCGGATGCGTGGAAGGATTTAGCTTCAGGGACTGTTGGAGGAGCTGCTCAACTAGTTGT 342
Query 277 TGGTCATCCATTTGACACAATCAAGGTCAAACTTCAGAGCCAACCGACTCCAGCACCAGG 336
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 343 TGGTCATCCATTTGACACTATCAAGGTCAAACTTCAGAGCCAACCGACTCCAGCACCAGG 402
Query 337 CCAACTTCCAAGGTACACTGGTGCAATCGATGCCGTTAAACAGACCGTTGCTTCTGAAGG 396
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 403 CCAACTTCCAAGGTACACCGGTGCAATCGATGCGGTTAAACAGACCGTTGCTTCTGAAGG 462
Query 397 AGCTAAAGGTTTGTACAAAGGTATGGGAGCTCCTCTTGCAACCGTTGCTGCCTTCAATGC 456
| | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 463 AACCAAAGGTTTGTATAAAGGTATGGGAGCTCCACTTGCAACCGTTGCTGCCTTCAATGC 522
Query 457 GGTTTTGTTCACCGTGAGAGGTCAAATGGAAGGACTGCTTAGGTCTGAAGCTGGAGTTCC 516
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 523 GGTTTTGTTCACTGTGAGAGGTCAAATGGAAGGGCTGCTTAGGTCTGAAGCTGGAGTTCC 582
Query 517 TTTGACCATTAGTCAACAGTTTGTGTG-CGGCGCTGGCGCTGGTTTCGCTGTTTCGTTCC 575
||||||||||||||||||||||||| | ||| || |||||||||||||||||||||||||
Sbjct 583 TTTGACCATTAGTCAACAGTTTGTG-GCCGGTGCAGGCGCTGGTTTCGCTGTTTCGTTCC 641
Query 576 TTGCTTGTCCTACCGAGTTGATCAAATGCAGGCTGCAAGCACAAGGTGCAGCAGTAGCTG 635
||||||||||||||||||||||||| |||||| |||||||||||||| ||| ||||||
Sbjct 642 TTGCTTGTCCTACCGAGTTGATCAAGTGCAGGTTGCAAGCACAAGGT---GCATTAGCTG 698
Query 636 GCGCCTCTACCACAAGCTCAGTGGTTGCAGCCATGAAATACGGGGGACCAATGGATGTAG 695
| |||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 699 GTGCCTCTACTACAAGCTCAGTGGTTGCAGCCGTGAAATACGGTGGACCAATGGATGTAG 758
Query 696 CCCGTCATGTCCTACGATCTGAAGGCGGAGCACGAGGTCTATTCAAAGGTTTATTCCCGA 755
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 759 CCCGTCATGTCCTACGATCAGAAGGAGGAGCACGAGGTCTATTCAAAGGTTTATTCCCTA 818
Query 756 CATTCGCCCGTGAAGTCCCGGGAAATGCAACAATGTTTGCAGCCTACGAAGCTTTCAAGC 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 CATTCGCCCGTGAAGTCCCGGGAAATGCAACAATGTTTGCAGCCTACGAAGCTTTCAAGC 878
Query 816 GGTTTTTAGCCGGTGGTTCAGACACTTCAAGCTTAGGACAAGGGTCATTAATCATGGCGG 875
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 879 GGTTTTTAGCCGGTGGTTCAGACACTTCAAGCTTAGGACAAGGGTCATTGATCATGGCGG 938
Query 876 GTGGAGTCGCTGGTGCGGCGTTTTGGGGAATTGTATATCCAACCGATGTCGTGAAGAGTG 935
|||||||||||||||| | ||||||||||| |||||||| || ||||| ||||||||||
Sbjct 939 GTGGAGTCGCTGGTGCTTCTTTTTGGGGAATAGTATATCCGACAGATGTTGTGAAGAGTG 998
Query 936 TTCTTCAAGTCGACGATTATAAAAACCCGAAATACACAGGGTCGATGGATGCTTTTCGGA 995
||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct 999 TTCTTCAAGTCGACGATTACAAAAACCCGAGATACACGGGGTCGATGGATGCTTTTCGGA 1058
Query 996 AGATTCTGAAATCTGAAGGTGTTAAAGGTTTGTATAAAGGGTTCGGTCCAGCAATGGCTA 1055
||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||
Sbjct 1059 AGATTCTGAAATCTGAAGGAGTTAAAGGTTTGTATAAAGGATTTGGTCCAGCTATGGCTA 1118
Query 1056 GGAGTGTTCCTGCTAATGCTGCTTGCTTCTTGGCTTATGAGATGACAAGGTCAAGCTTGG 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 GGAGTGTTCCTGCTAATGCTGCTTGCTTCTTGGCTTATGAGATGACAAGGTCAAGCTTGG 1178
Query 1116 GATAAACCGGCTCGGTTTGGGTTTAACTGTTGGTCCGATTACTGGATGTTCCATTGCGAT 1175
|||||||||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||
Sbjct 1179 GATAAACCGGTTCGGTTTGGGTTTAACTGTTGGTTCGATTTCTGAATGTTCCATTGCGAT 1238
Query 1176 TAACCTTTTATGTTTTTAGATTTGATTCTTTGAAATTTTCTGCAAAATTTATGTATCTTT 1235
|||||| | |||||||||||||||||||| ||| ||||||||||||||||||| | ||
Sbjct 1239 TAACCTCTC-TGTTTTTAGATTTGATTCTTAAAAAATTTCTGCAAAATTTATGTACCATT 1297
Query 1236 TACACAGTTTATTTCAATATCTCTTACACAG 1266
|||||||||||||||| ||| ||||||||||
Sbjct 1298 TACACAGTTTATTTCAGTATTTCTTACACAG 1328
Score = 97.1 bits (52), Expect = 4e-19
Identities = 62/66 (94%), Gaps = 4/66 (6%)
Strand=Plus/Plus
Query 91 TTTTGGATTTTATCTGATCATCACTCG-TTTGTGTCTCTGAATCTCTATCCCGTGGATTC 149
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 128 TTTTGGATTTTATCTG---ATCACTCGTTTTGTGTCTCTGAATCTCTATCCCGTGGATTC 184
Query 150 GCATCT 155
||||||
Sbjct 185 GCATCT 190
Score = 80.5 bits (43), Expect = 4e-14
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 2 AAACAAAACTTCTGTCTCTGCAAAGCTCCATCCTTTGTGGTTGTGT 47
|||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 14 AAACAAAACTTCAGTCTCTGCAAAGCTCCATCCTTTGTGGTTGTGT 59
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62248675800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5