BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494298 Length=674 Score E Sequences producing significant alignments: (Bits) Value AT5G46795.1 | Symbols: MSP2 | microspore-specific promoter 2 |... 1014 0.0 > AT5G46795.1 | Symbols: MSP2 | microspore-specific promoter 2 | chr5:18986988-18988197 REVERSE LENGTH=675 Length=675 Score = 1014 bits (549), Expect = 0.0 Identities = 635/674 (94%), Gaps = 15/674 (2%) Strand=Plus/Plus Query 1 AATCACAAGTCTTATGGAGACGATTGAGCAACAAAGACATTCACTCTCTTCTTTGCCTAT 60 ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 17 AATAACAAGTCTTATGGAGACGATTGAGCAACAAAAACATTCACTCTCTTCTTTGCCTAT 76 Query 61 GCTCTCTAGGCTTGAACACTTGGATTTCGTTATAAAGAACCTAGAGAGACAACAAAACCT 120 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 77 GCTCTCTAGGCTTGAACACTTGGATTTCGTTATAAAGAATCTAGAGAGACAACAAAACCT 136 Query 121 TCCGATTCCGAAATGGAAAGAGGAAAGCGCGTCTACCACACGTGGATTAATCGATAGAGG 180 ||||| || |||||||| ||||||||| ||||||| ||||| |||||||||||||| Sbjct 137 TCCGA-----AA-TGGAAAGACGAAAGCGCGCCTACCACGCGTGGGTTAATCGATAGAGG 190 Query 181 CACGGCGATTAGAGAAGCGTATTTCAAAGGATCATTACTAGATCGAATCGCGGCTTTGGA 240 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 191 CACGGCGATTAGAGAAGCGTATTTCAAAGGATCGTTACTAGATCGAATCGCGGCTTTGGA 250 Query 241 GACCAGACTTTTTCAGATATGTTTGGAATTGGAATCGAGCAGTGCATCTTCTACTTCAAC 300 ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 251 GACCAGACTTTTTCAGATATGTTTGGAGTTGGAATCGAGCAGTGGATCTTCTACTTCAAC 310 Query 301 TGGAGGGTCCGGAGAAACATCAAGCCAAAGGATTAAGAGAGATTTGACAAAGACATTACC 360 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 311 TGGAGGGTCTGGTGAAACATCAAGCCAAAGGATTAAGAGAGATTTGACAAAGACATTACC 370 Query 361 CATTTTCAGTAGCAACATTAATCCTTTTCATGTTCCCTTACAACATCCACAAGACCCTCG 420 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 371 CATTTTCAGTAGCAACATTAATCCTTTTCATGTCCCCTTACAACATCCACAAGACCTTCG 430 Query 421 ggagatggaggagaagattgaagaagagaaagaggaagagataaatgtagagaagccatt 480 ||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct 431 GGAGATGGAGGAGAAGATTGAGGAAGAGAAAGAAGAAGAGATCAATGTAGAGAAGCCATT 490 Query 481 actggagaagaaaaataagaagactaagaagaatgatgctactgaaacttgcaaaccaaa 540 ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 491 ACTGGAGAAGAAAAATAAGAAGACTAAAAAGAATGATGCTAATGAAACTTGCAAACCAAA 550 Query 541 gaagaagaagaagaCAAAATCTCCCAAGAAATGGTCTCGTTTTAGCTTATTGGGCTGTTA 600 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 551 GAAGAAGAAGA---CAAAATCTCCCAAGAAATGGTCTCGTTTTAGCTTATTGGGCTGCTA 607 Query 601 ATTTTATGTTATCTGAAATTCCTTGGACTATGCATTTATTTCGTTTTTGTTTAAATCTAA 660 ||||||| | | ||||| | ||||||||||||| ||||||| ||||||||||||||| Sbjct 608 ATTTTATCT-A----AAATTTCATGGACTATGCATT-ATTTCGTATTTGTTTAAATCTAA 661 Query 661 GTTTTTCTTTACCC 674 |||||||||||||| Sbjct 662 GTTTTTCTTTACCC 675 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32601961403 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5