BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494298
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46795.1 | Symbols: MSP2 | microspore-specific promoter 2 |... 1014 0.0
> AT5G46795.1 | Symbols: MSP2 | microspore-specific promoter 2
| chr5:18986988-18988197 REVERSE LENGTH=675
Length=675
Score = 1014 bits (549), Expect = 0.0
Identities = 635/674 (94%), Gaps = 15/674 (2%)
Strand=Plus/Plus
Query 1 AATCACAAGTCTTATGGAGACGATTGAGCAACAAAGACATTCACTCTCTTCTTTGCCTAT 60
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 17 AATAACAAGTCTTATGGAGACGATTGAGCAACAAAAACATTCACTCTCTTCTTTGCCTAT 76
Query 61 GCTCTCTAGGCTTGAACACTTGGATTTCGTTATAAAGAACCTAGAGAGACAACAAAACCT 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 77 GCTCTCTAGGCTTGAACACTTGGATTTCGTTATAAAGAATCTAGAGAGACAACAAAACCT 136
Query 121 TCCGATTCCGAAATGGAAAGAGGAAAGCGCGTCTACCACACGTGGATTAATCGATAGAGG 180
||||| || |||||||| ||||||||| ||||||| ||||| ||||||||||||||
Sbjct 137 TCCGA-----AA-TGGAAAGACGAAAGCGCGCCTACCACGCGTGGGTTAATCGATAGAGG 190
Query 181 CACGGCGATTAGAGAAGCGTATTTCAAAGGATCATTACTAGATCGAATCGCGGCTTTGGA 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 191 CACGGCGATTAGAGAAGCGTATTTCAAAGGATCGTTACTAGATCGAATCGCGGCTTTGGA 250
Query 241 GACCAGACTTTTTCAGATATGTTTGGAATTGGAATCGAGCAGTGCATCTTCTACTTCAAC 300
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 251 GACCAGACTTTTTCAGATATGTTTGGAGTTGGAATCGAGCAGTGGATCTTCTACTTCAAC 310
Query 301 TGGAGGGTCCGGAGAAACATCAAGCCAAAGGATTAAGAGAGATTTGACAAAGACATTACC 360
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TGGAGGGTCTGGTGAAACATCAAGCCAAAGGATTAAGAGAGATTTGACAAAGACATTACC 370
Query 361 CATTTTCAGTAGCAACATTAATCCTTTTCATGTTCCCTTACAACATCCACAAGACCCTCG 420
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 371 CATTTTCAGTAGCAACATTAATCCTTTTCATGTCCCCTTACAACATCCACAAGACCTTCG 430
Query 421 ggagatggaggagaagattgaagaagagaaagaggaagagataaatgtagagaagccatt 480
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 431 GGAGATGGAGGAGAAGATTGAGGAAGAGAAAGAAGAAGAGATCAATGTAGAGAAGCCATT 490
Query 481 actggagaagaaaaataagaagactaagaagaatgatgctactgaaacttgcaaaccaaa 540
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 491 ACTGGAGAAGAAAAATAAGAAGACTAAAAAGAATGATGCTAATGAAACTTGCAAACCAAA 550
Query 541 gaagaagaagaagaCAAAATCTCCCAAGAAATGGTCTCGTTTTAGCTTATTGGGCTGTTA 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 551 GAAGAAGAAGA---CAAAATCTCCCAAGAAATGGTCTCGTTTTAGCTTATTGGGCTGCTA 607
Query 601 ATTTTATGTTATCTGAAATTCCTTGGACTATGCATTTATTTCGTTTTTGTTTAAATCTAA 660
||||||| | | ||||| | ||||||||||||| ||||||| |||||||||||||||
Sbjct 608 ATTTTATCT-A----AAATTTCATGGACTATGCATT-ATTTCGTATTTGTTTAAATCTAA 661
Query 661 GTTTTTCTTTACCC 674
||||||||||||||
Sbjct 662 GTTTTTCTTTACCC 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32601961403
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5