BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494299
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46790.1 | Symbols: PYL1, RCAR12 | PYR1-like 1 | chr5:189838... 926 0.0
AT4G17870.1 | Symbols: PYR1, RCAR11 | Polyketide cyclase/dehydr... 372 3e-102
> AT5G46790.1 | Symbols: PYL1, RCAR12 | PYR1-like 1 | chr5:18983870-18984759
REVERSE LENGTH=890
Length=890
Score = 926 bits (501), Expect = 0.0
Identities = 714/811 (88%), Gaps = 37/811 (5%)
Strand=Plus/Plus
Query 1 ATCAATGGCGAATTCAGAGTCCTCACAAGT-A--AGCGAA-GAAGAAGAGAACAACCAGA 56
|||||||||||||||||||||||| | | | || || ||||||||||||| |||||
Sbjct 28 ATCAATGGCGAATTCAGAGTCCTC-CTCCTCACCAGTAAACGAAGAAGAGAACAGCCAGA 86
Query 57 GAATCTCAACACTCCATCACCAAACGATGCCTTCCGAGTTAACTCAAGACGAATTCACCT 116
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 87 GAATCTCAACACTCCATCACCAAACCATGCCTTCCGATTTAACTCAAGACGAATTCACC- 145
Query 117 C-ACTCTCCCAATCAATCGCCGAGTTCCACACATACCAACTCGGTCACGGCCGTTGCTCA 175
| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 146 CAACTCTCCCAATCAATCGCCGAGTTCCACACGTACCAACTCGGTAACGGCCGTTGCTCA 205
Query 176 TCTCTCTTAGCTCAACGGATCCACGCGCCGCCGGAAACAGTCTGGTCCGTCGTGAGAAGA 235
|||||| ||||||| || ||||||||||||||||||||||| |||||||| |||||| |
Sbjct 206 TCTCTCCTAGCTCAGCGAATCCACGCGCCGCCGGAAACAGTATGGTCCGTGGTGAGACGT 265
Query 236 TTCGACAGACCACAGATTTACAAACACTTCATCAAAAGCTGTTTCGTGAAG-GAAGGTTT 294
||||| || ||||||||||||||||||||||||||||||||| |||| || |||| |||
Sbjct 266 TTCGATAGGCCACAGATTTACAAACACTTCATCAAAAGCTGTAACGTG-AGTGAAGATTT 324
Query 295 CGAGATGCGAGTGGGATGCACGCGCGACGTGAACGTGATAAGTGGATTACCGGCGAATAC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 CGAGATGCGAGTGGGATGCACGCGCGACGTGAACGTGATAAGTGGATTACCGGCGAATAC 384
Query 355 ATCGAGAGAGAGATTAGATCTGTTGGACGATGATCGGAGAGTGACTGGGTTTAGTATCAC 414
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 385 GTCTCGAGAGAGATTAGATCTGTTGGACGATGATCGGAGAGTGACTGGGTTTAGTATAAC 444
Query 415 CGGTGGTGAACATAGGCTGAGGAATTATAAATCGGTGACGACGGTTCATAGATTTGAGAA 474
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 445 CGGTGGTGAACATAGGCTGAGGAATTATAAATCGGTTACGACGGTTCATAGATTTGAGAA 504
Query 475 AGAAGATC--G--GA-----TCTGGACCGTTGTTTTGGAATCGTACGTTGTTGATGTACC 525
|||||| | || |||||||||||||||||||||| || ||||||||||||||
Sbjct 505 AGAAGAAGAAGAAGAAAGGATCTGGACCGTTGTTTTGGAATCTTATGTTGTTGATGTACC 564
Query 526 GGAAGGTAATTCGGAGGAAGATACGAGATTGTTTGCAGATACGGTTATTAGATTGAATCT 585
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 565 GGAAGGTAATTCGGAGGAAGATACGAGATTGTTTGCTGATACGGTTATTAGATTGAATCT 624
Query 586 TCAGAAACTTGCGTCGATCACTGAAGCTATGAATCGGAACAACAACAACG-C--CGGTGA 642
|||||||||||| |||||||||||||||||||| ||||||||||||||| | | |
Sbjct 625 TCAGAAACTTGCTTCGATCACTGAAGCTATGAACCGGAACAACAACAACAACAACTCTTC 684
Query 643 -C-GG--AGG-AA-GA--AACTCTTCTTCTTCTCAGG--TGATG-TAAAATTGGGGGatt 691
| || ||| || || || | || | || | |||| |||||||| |
Sbjct 685 TCAGGTTAGGTAATGATGAAAT-TTGGGGGAAAGAAAAATGTTTCTAAA-TTGGGGGAGT 742
Query 692 tttaatttt-attttgatttgtaatatgttttttttttttttCTTGAATTGTAATTTCCT 750
||||||||| |||||||||||||| | ||||||||| || | ||||||||||||||||||
Sbjct 743 TTTAATTTTTATTTTGATTTGTAAAACGTTTTTTTTCTTCT-CTTGAATTGTAATTTCCT 801
Query 751 CGTTTGATTT-ATGGTTATGttttttttttt 780
||||||||| ||||||||||||| ||||||
Sbjct 802 TGTTTGATTTTATGGTTATGTTTTATTTTTT 832
> AT4G17870.1 | Symbols: PYR1, RCAR11 | Polyketide cyclase/dehydrase
and lipid transport superfamily protein | chr4:9928678-9929518
FORWARD LENGTH=841
Length=841
Score = 372 bits (201), Expect = 3e-102
Identities = 403/499 (81%), Gaps = 20/499 (4%)
Strand=Plus/Plus
Query 128 TCAATCGCCGAGTTCCACACATACCAACTCGGTC-ACGGCCGTTGCTCATCTCTCTTA-G 185
||||||||||||||||||||||||||||||| || | || | || ||||| ||| | |
Sbjct 160 TCAATCGCCGAGTTCCACACATACCAACTCGATCCA-GGAAGCTGTTCATCACTCC-ACG 217
Query 186 CTCAACGGATCCACGCGCCGCCGGAAA-CAGTCTGGTCCGTCGTGA-GAAGATTCGACAG 243
| ||||| ||||||||||| |||||| | |||||||| |||| | || |||||||||
Sbjct 218 CGCAACGAATCCACGCGCCTCCGGAACTC-GTCTGGTCAATCGT-ACGACGATTCGACAA 275
Query 244 ACCACAGATTTACAAACACTTCATCAAAAGCTGTTTCGT-GAAGGAAGGTTTCGAGATGC 302
|||||| | |||||||||||||||||| ||| | ||| ||| || || ||||||||
Sbjct 276 ACCACAAACATACAAACACTTCATCAAATCCTGCTCCGTCGAACAAAACTT-CGAGATGC 334
Query 303 GAGTGGGATGCACGCGCGACGTGAACGTGATAAGTGGATTACCGGCGAATACATCGA-GA 361
| || ||||||||||||||||||| ||| || ||||||||||||||||| ||||| | |
Sbjct 335 GCGTCGGATGCACGCGCGACGTGATCGTCATCAGTGGATTACCGGCGAACACATCAACG- 393
Query 362 GAGAGATTAGATCTGTTGGACGATGATCGGAGAGTGACTGGGTTTAGTATCACCGGTGGT 421
|| ||| | ||| | | ||||| || |||||||| || || || ||||||| ||| ||
Sbjct 394 GAAAGACTCGATATACTCGACGACGAACGGAGAGTTACCGGATTCAGTATCATCGGAGGC 453
Query 422 GAACATAGGCTGAGGAATTATAAATCGGTGACGACGGTTCATAGATTTGAGAAAGAAGA- 480
||||||||||||| |||||| ||||| || |||||||| ||| | || |||||||| ||
Sbjct 454 GAACATAGGCTGACGAATTACAAATCCGTTACGACGGTGCATCGGTTCGAGAAAGA-GAA 512
Query 481 TCGGATCTGGACCGTTGTTTTGGAATCGTACGTTGTTGATGTACCGGAAGGTAATTCGGA 540
|||||||||||| || ||||||||||| ||||| |||||| | ||||||||||| |||||
Sbjct 513 TCGGATCTGGACGGTGGTTTTGGAATCTTACGTCGTTGATATGCCGGAAGGTAACTCGGA 572
Query 541 GGAAGATACGAG-ATTGTTTGCAGATACGGTTATTA-GATTGAATCTT-CAGAAACTTGC 597
||| ||||| | || |||||| ||||||||| | | | || ||| || |||||||| ||
Sbjct 573 GGATGATACTCGTAT-GTTTGCTGATACGGTTGTGAAGCTT-AAT-TTGCAGAAACTCGC 629
Query 598 GTCGATCACTGAAGCTATG 616
| || | |||||||||||
Sbjct 630 GACGGTTGCTGAAGCTATG 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38931463925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5