BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494303
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46750.1 | Symbols: AGD9 | ARF-GAP domain 9 | chr5:18969749-... 2244 0.0
AT4G17890.1 | Symbols: AGD8 | ARF-GAP domain 8 | chr4:9937022-9... 915 0.0
> AT5G46750.1 | Symbols: AGD9 | ARF-GAP domain 9 | chr5:18969749-18971932
REVERSE LENGTH=1525
Length=1525
Score = 2244 bits (1215), Expect = 0.0
Identities = 1403/1488 (94%), Gaps = 36/1488 (2%)
Strand=Plus/Plus
Query 1 TCTGCTTTGAAGAAGAAGAG-CGATCCATCGTCACCACTTTCAGATTTCCAGATTCT--G 57
|||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |
Sbjct 32 TCTGCTTTGAAGAAGAAGAGTCGATCCATAATCGCCACTTTCAGATTTCCAGATTCTGGG 91
Query 58 G--------------TCTTCAACGATGGCGACTGAGAAACTCACCGATAAGAATGTTGTT 103
| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 92 GAAACATCTCTAAACTCTTCAACGATGGCGACTGAGAATCTCACCGATAAGAATGTTGTT 151
Query 104 TTCAGAAAACTGAAATCAAAATCCGAGAACAAGGTTTGCTTCGATTGTAGTGCGAAGAAT 163
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 152 TTCAGAAAGCTGAAATCAAAATCCGAGAACAAGGTTTGCTTTGATTGTAGTGCGAAGAAT 211
Query 164 CCAACTTGGGCTTCGGTTCCTTATGGGATCTTTCTATGCATCGATTGTTCAGCTGTTCAT 223
||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 212 CCAACATGGGCTTCTGTTCCTTATGGGATCTTCCTATGCATCGATTGTTCTGCTGTTCAT 271
Query 224 CGAAGTCTCGGTGTTCATATTAGCTTCGTCAGGTCAACGAACTTAGACTCGTGGAGTCCT 283
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 272 CGAAGTCTAGGTGTTCATATCAGCTTCGTCAGGTCAACGAACTTAGACTCGTGGAGTCCT 331
Query 284 GAGCAGCTAAGAACAATGATGTTTGGTGGGAACAACCGAGCTCAGGTGTTTTTTAAGCAA 343
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 332 GAGCAGCTAAGAACAATGATGTTTGGAGGGAACAATCGAGCTCAGGTGTTTTTTAAGCAA 391
Query 344 CATGGATGGAATGATGGTGGTAAAATTGAGGCCAAGTATACTTCAAGAGCTGCTGATTTG 403
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||
Sbjct 392 CATGGATGGAATGATGGTGGTAAGATTGAGGCTAAGTATACTTCAAGAGCTGCTGATATG 451
Query 404 TATAGACAAACACTTGCTAAAGAAGTTGCTAAAGCCATGGCCGAAGAAACTGTTTTACCG 463
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 452 TATAGACAGACTCTTGCTAAAGAAGTTGCTAAAGCCATGGCTGAAGAAACTGTTTTACCG 511
Query 464 TCATTATCCTCTGTTGCTACTTCTCAGCCAGTGGAATCATCTGAAAATGGGTTTACTTCT 523
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 TCGTTATCCTCTGTTGCTACTTCTCAGCCAGTGGAATCATCTGAAAATGGGTTTACTTCT 571
Query 524 GAATCTCCGAAAGAGAGTTCTTTGGTTAAGCAAGAAGCAACTGTTGTCTCCACTTCTTCA 583
||||||||||||||||||||||| | |||||||||||| |||||| | | ||||||
Sbjct 572 GAATCTCCGAAAGAGAGTTCTTT-G--AAGCAAGAAGCAGCTGTTG--T---C-TCTTCA 622
Query 584 CCAAAAGCTTCTCAGAAAGTTGTTGCTAGTACGTTTAAGAAACCCCTTGTGTCGAGAAAG 643
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 623 CCAAAAGCTTCTCAGAAAGTTGTTGCTAGTACGTTTAAGAAACCTCTTGTTTCGCGAAAG 682
Query 644 ACAGGGAAGACTGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAGCCAAAGGATAACCTC 703
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 683 TCTGGGAAGACTGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAGTCAAAGGATAACCTC 742
Query 704 TATGAGCAGAAGCCTGAAGAACCTGTACCTGTGATTCCTGCTGCTTCTTCAACTAACGAC 763
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 743 TATGAGCAGAAGCCTGAAGAACCTGTACCTGTGATTCCTGCTGCTTCTCCAACCAATGAC 802
Query 764 ACATCATCAGCTGGATCATCATTTGCCTCTCGATTTGAGTACTTTGATGATGAGCAATCT 823
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 ACATCAGCAGCTGGATCATCATTTGCCTCTCGATTTGAGTACTTTGATGATGAGCAATCT 862
Query 824 GGTGGGCAAAGTGGCACACGAGTGCTTAGTCATGTTGCTCCACCAAAGTCATCGAATTTC 883
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 863 GGTGGGCAAAGTGGCACACGGGTGCTTAGCCATGTTGCTCCACCAAAGTCATCAAATTTC 922
Query 884 TTTAATGAATTTGGAATGGACAGTGCTTTCCCCAAGAAGTCAAGCTCAAGCTCATCCAAA 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 TTTAATGAATTTGGAATGGACAGTGCTTTCCCCAAGAAGTCAAGCTCAAGCTCATCCAAA 982
Query 944 GCTCAGGTTGAAGAAACAGATGAAGCAAGAAAGAAGTTTTCAAACGCTAAATCGATTTCC 1003
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 983 GCTCAGGTTGAAGAAACAGATGAAGCAAGAAAGAAGTTTTCAAACGCCAAATCGATTTCC 1042
Query 1004 TCTGCCCAATTTTTCGGAAACCAGAACAGAGATGCCGATCTGGACTCAAAAGCTACCCTT 1063
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1043 TCTGCCCAATTTTTCGGAAATCAGAACAGAGATGCCGATCTTGACTCAAAAGCTACCCTT 1102
Query 1064 CAGAAATTCTCGGGCTCAGCAGCTATTTCAAGTTCTGATCTTTTTGGCCACGGACCAGAT 1123
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 CAGAAGTTCTCGGGTTCAGCAGCTATTTCAAGTTCTGATCTTTTTGGCCACGGACCAGAT 1162
Query 1124 GATTCCAACATCGATATCACTGCAAGCGATCTCATCAACCGAATTTCTTTCCAGGCGCAG 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 GATTCCAACATCGATATCACTGCAAGCGATCTCATCAACCGAATTTCTTTCCAGGCGCAG 1222
Query 1184 CAAGATATGTCATCTATTGCTAACTTAGCTGAGGAAACAAAGAATAAGCTTGGAACATTT 1243
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1223 CAAGATATGTCATCTATTGCTAACTTAGCTGAGGAAACAAAGAATAAGCTGGGAACATTT 1282
Query 1244 GCCTCTAGTATATTCAGTGATCTTCAGGATAGAATGCTGTAAGAAACACACACAA--ATC 1301
|||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 1283 GCCTCTAGTATATTCAGTGATCTTCAGGATAGAATGCTGTAAGAAACATACA-AAGGATC 1341
Query 1302 TTGTCTTTCGATTTACAGAGAACAAATTGTCGGATATAAATGTCATTTTTACTTTTGGTT 1361
|||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1342 TTGTCTTTTGATTTACAGAGAACAAATTGTTGGATATAAATGTCATTTTTATTTTTGGTT 1401
Query 1362 TG--T----AGTTGAAAGAGTGATTTTTGAGGTAAATTGTTAAATGTGGAATTTGATCAT 1415
|| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1402 TGACTTTGTAGTTGAAAGAGTGATTTTTGAGGTAAATTGTTAAATGTGGAATTTGATAAT 1461
Query 1416 TTGATATGGATATGGTAGTATATGTTTACAGTAGTATGTATGGTATTG 1463
||||| |||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 1462 TTGATGTGGATATGGTAGAATATGTT-ACAGTATTATGTATGGTATTG 1508
> AT4G17890.1 | Symbols: AGD8 | ARF-GAP domain 8 | chr4:9937022-9939493
FORWARD LENGTH=1688
Length=1688
Score = 915 bits (495), Expect = 0.0
Identities = 1020/1262 (81%), Gaps = 81/1262 (6%)
Strand=Plus/Plus
Query 75 CTGAGAAACTCACCGATAAGAATGTTGTTTTCAGAAAACTGAAATCAAAATCCGAGAACA 134
|||| || || ||||| || || |||||||||||||||| ||||||||||| |||||||
Sbjct 116 CTGACAATCTTACCGACAAAAACATTGTTTTCAGAAAACTCAAATCAAAATCTGAGAACA 175
Query 135 AGGTTTGCTTCGATTGTAGTGCGAAGAATCCAACTTGGGCTTCGGTTCCTTATGGGATCT 194
|||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||| |
Sbjct 176 AGGTCTGCTTCGATTGTAGTGCGAAGAATCCAACTTGGGCATCGGTTACATATGGGAT-T 234
Query 195 TTC-TATGCATCGATTGTTCAGCTGTTCATCG-AAGTCTCGGTGTTCATATTAGCTTCGT 252
||| | |||||||||||||||||| ||| || || ||| ||||||||||| ||||||||
Sbjct 235 TTCCTCTGCATCGATTGTTCAGCTACTCACCGGAA-TCTTGGTGTTCATATCAGCTTCGT 293
Query 253 CAGGTCAACGAACTTAGACTCGTGGAGTCCTGAGCAGCTAAGAACAATGATGTTTGGTGG 312
||| |||||||| |||||||| ||||| || |||||||| || |||||||||||||||||
Sbjct 294 CAGATCAACGAATTTAGACTCTTGGAGCCCGGAGCAGCTCAGGACAATGATGTTTGGTGG 353
Query 313 GAACAACCGAGCTCAGGTGTTTTTT-AAGCAACATGGATGGAATGATGGTGGTAAAATTG 371
|||||||| |||||||| ||| || |||||||||||||||| ||||||||| |||||||
Sbjct 354 TAACAACCGTGCTCAGGT-TTTCTTCAAGCAACATGGATGGACTGATGGTGGCAAAATTG 412
Query 372 AGGCCAAGTATACTTCAAGAGCTGCTGATTTGTATAGACAAACACTTGCTAAAGAAGTTG 431
| || |||||||||||||||||||||||||||||| | || | ||||||||||||||||
Sbjct 413 AAGCTAAGTATACTTCAAGAGCTGCTGATTTGTATCGGCAGATTCTTGCTAAAGAAGTTG 472
Query 432 CTAAAGCCATGGCCGAAGAAACTG-TT-T--TAC--C-GTCATTATCCTCTGTTGCTACT 484
| ||||| || || ||||||||| || | | | | ||||| ||| | |||||||||
Sbjct 473 CGAAAGCGATTGCGGAAGAAACTAATTCTGGT-CTTCTGTCATC-TCC-C-GTTGCTACT 528
Query 485 TCTCAGCCAGTGGAA-TCATCTGAAAATGGG-TTTACTTCTGAATCTC-CGAAAGA-GAG 540
|||||| | |||| | |||| || |||| ||| ||||| | ||| | || || |||
Sbjct 529 TCTCAGTTACCGGAAGT-ATCT-AA--TGGGGTTT-CTTCTTATTCTGTC-AAGGAAGAG 582
Query 541 TT-C-T-TTG-GTTAAGCAAGAAGCAACT-GTTGTCTCCACTTCTTCACCAAAAGCTTCT 595
|| | | || | || || ||||| || || | || |||||||| || |||||||||
Sbjct 583 TTACCTCTTTCGA-AA-CATGAAGCTACCAGT-G-CT--ACTTCTTCGCCTAAAGCTTCT 636
Query 596 CAGAAAGTTGTTGC-TAGTACGTTTAAGAAACCCCTTG-TGTCGAGAAAG-ACAGGGAAG 652
| | |||||| || |||||||||||||||||| ||| || | | |||| ||||| ||
Sbjct 637 AATACAGTTGT-GCCTAGTACGTTTAAGAAACCTATTGGTG-CTA-AAAGGACAGGAAAA 693
Query 653 ACTGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAGCCAAAGGATAACCTCTATGAGCAG 712
||||||||||||||||| | |||||||||||||||||||| || || ||||||||||||
Sbjct 694 ACTGGTGGTCTTGGTGCAAGGAAGCTTACTACTAAGCCAAAAGACAATCTCTATGAGCAG 753
Query 713 AAGCCTGAAGAACCTGTACCTGTGATTCCTGCTGCT-TCTTCAAC---TAACG---ACA- 764
|| || |||||| || ||| || ||||| |||| | || ||||| ||||| | |
Sbjct 754 AAACCGGAAGAAGTTGCACCGGTTATTCCCGCTG-TATCATCAACAAATAACGGGGAAAG 812
Query 765 CA--TCATCAGCTGGATCATCATTTGCCTCTCGATTTGAGTACTTTGATGATGAGCAATC 822
|| ||||||||||| ||||||||||||||||| ||||||||| ||| || ||||||
Sbjct 813 CAAATCATCAGCTGGTTCATCATTTGCCTCTCGGTTTGAGTACAATGACGACCTGCAATC 872
Query 823 TGGTGGGCAAAG--T-GGC---ACACGAGTGCTTAGTCATGTTGCTCCACCAAAGTCATC 876
||| || ||||| | || |||| |||||||| |||||||||||||||||||| ||
Sbjct 873 TGGAGGACAAAGCGTTGGTGGTACACAAGTGCTTAACCATGTTGCTCCACCAAAGTCGTC 932
Query 877 GAAT-TTCTTTAATGAATTTGGAATGGACAGTGCTTTCCCCAAGAAGTCAAGCTC-AAGC 934
|| |||||| || ||||||||||||||| |||| |||||||| |||||||| || |
Sbjct 933 -AAGCTTCTTTTCGGATTTTGGAATGGACAGTTCTTTTCCCAAGAAATCAAGCTCCAA-C 990
Query 935 TCATCCAAAGCTCAGGTTGAAGAAACAGATGAAGCAAGAAAGAAGTTTTCAAACGCTAAA 994
|| || ||| |||| ||||||||| |||||||||||||||||||||| ||||||| |||
Sbjct 991 TCTTCAAAATCTCAAGTTGAAGAATCAGATGAAGCAAGAAAGAAGTTCACAAACGC-AAA 1049
Query 995 -TCGATTTCCTCTGCCCAATT-TTTCGGAAACCAGAACAGAGATGCCGATCTGGACTCAA 1052
|| || || || || || | ||| || | | |||||| | | || |||||||| ||||
Sbjct 1050 GTCCATATCTTCAGCTCAGTACTTTGGGGATC-AGAACAAAAACGCTGATCTGGAATCAA 1108
Query 1053 AAGCTACCCTTCAGAAATTCT-CGGGCTCAGCAGCTATTTCAAGTTCTGATCTTTTT-GG 1110
||||||| |||||||| || | | ||||||||| |||| ||||| ||||| |||| ||
Sbjct 1109 AAGCTACTCTTCAGAAGTT-TGCAGGCTCAGCATCTATCTCAAGCGCTGAT-TTTTACGG 1166
Query 1111 CCACGGACCA-GATGATTCCAACATCGATATCACTGCAAGCGATCTCATCAACCGAATTT 1169
|||| |||| ||||||||||| || ||||| || || || |||||||| |||||| |||
Sbjct 1167 TCACG-ACCAAGATGATTCCAATATTGATATAACAGCTAGTGATCTCATTAACCGACTTT 1225
Query 1170 CTTTCCAGGCGCAGCAAGATATGTCATCTATTGCT-AACTTAGCTG-AGGAAACAAAGAA 1227
||||||||||||| |||||| | || || | | | ||| |||| | || ||||||||||
Sbjct 1226 CTTTCCAGGCGCAACAAGATCTATCGTCGCTGG-TGAACATAGCAGGAG-AAACAAAGAA 1283
Query 1228 TAAGCTTGGAACATTTGCCT-CTAGTATATTCAGTGATCTTCAGGATAGAATGCTGTAAG 1286
||||||||||| |||| || || |||| ||||||||| |||| || |||||||||||||
Sbjct 1284 GAAGCTTGGAAC-TTTGGCTTCTGGTATCTTCAGTGATATTCAAGACAGAATGCTGTAAG 1342
Query 1287 AA 1288
||
Sbjct 1343 AA 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72138183165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5