BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494306
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46730.1 | Symbols: | glycine-rich protein | chr5:18964012-... 1463 0.0
> AT5G46730.1 | Symbols: | glycine-rich protein | chr5:18964012-18965068
FORWARD LENGTH=1057
Length=1057
Score = 1463 bits (792), Expect = 0.0
Identities = 969/1049 (92%), Gaps = 33/1049 (3%)
Strand=Plus/Plus
Query 1 AAACACAATGGTTTCTCTCAAAGCTTTCTCAACTGTCTTTTTTCTTATACTCGGTGTTAG 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 12 AAACACAATGGTTTCTCTCAAAGCTTTCTCAACTGTGTTTTTTCTTATACTCGGCGTTAG 71
Query 61 CATTTGCTACGCCACTAGCCGCAATCTTTTGAACTACGGAGAAGCTGCTGGCggtgcagg 120
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||
Sbjct 72 CATTTGCTACGCCACTAGCCGCAATCTTTTGAACTACGGCCAAGCTTCTGGCGGTGGAGG 131
Query 121 aca---tggtggt---gg---t------g-gag--gt----g-ca-ggaggagtgagtgg 156
||| ||||||| || | | ||| || | | ||||||| ||||||
Sbjct 132 ACATGGTGGTGGTGGAGGTTCTGGAGGAGTGAGTAGTGGAGGTTATGGAGGAGAGAGTGG 191
Query 157 tggtgcttatggtggtggtagtggagaaggagctggtggtggatatggaggtgctaaagg 216
||||| |||||| || ||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 192 TGGTGGTTATGGGGGCGGTAGTGGAGAAGGAGCTGGTGGAGGATATGGAGGTGCTGAAGG 251
Query 217 gtatgctagtggtggtggtggtgggcatggtggaggcggtggtggAGCTGCTTCTTCCGG 276
||||||||||||||| ||| |||| || |||||||| ||||||||||||||||| |||||
Sbjct 252 GTATGCTAGTGGTGGCGGTAGTGGTCACGGTGGAGGTGGTGGTGGAGCTGCTTCCTCCGG 311
Query 277 TGGTTATGCTAgtggaggaggagaaggaggaggtggtggttatggtggagcggctggtgg 336
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 312 TGGTTATGCTAGTGGAGCAGGAGAAGGAGGAGGTGGTGGTTATGGTGGAGCTGCTGGTGG 371
Query 337 tcatgctggtggtggaggtggtggtagcggaggcggtggaggaTCAGCTTACGGTGCTGG 396
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 372 TCATGCTGGTGGTGGAGGTGGTGGTAGTGGAGGCGGTGGAGGATCAGCTTACGGTGCTGG 431
Query 397 AGGAGAGCATGCTAGTGGCTATGGAAACGGAGCTGGTGAAGGTGGTGGCGCCGGTGGAAG 456
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 432 AGGAGAGCATGCTAGTGGTTATGGAAACGGAGCTGGTGAAGGTGGTGGCGCCGGTGCAAG 491
Query 457 Tgagtatggaggtggagcttatggaggcggcggtggccatggaggaggaggaggtggagg 516
|| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 492 TGGGTATGGAGGGGGAGCTTATGGAGGCGGCGGTGGTCATGGAGGAGGAGGTGGTGGAGG 551
Query 517 atctgcaggaggGGCTCA---TGGTGGTGCTTACGGAGGCGGTGAAGGAGGAGGAGCtgg 573
||| |||||||||||||| ||| ||| ||| ||||||||||||||||||||||||||
Sbjct 552 ATCAGCAGGAGGGGCTCACGGCGGTAGTGGTTATGGAGGCGGTGAAGGAGGAGGAGCTGG 611
Query 574 tggtggagggtctcatgggggtgctggaggctatggaggtggtggcggtggaggaagtgg 633
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 612 TGGTGGAGGGTCTCATGGTGGTGCCGGAGGCTATGGAGGTGGTGGCGGTGGAGGAAGTGG 671
Query 634 aggaggaggagcttacggcggaggaggagcacatggaggtGGTTATGGAAGTGGTGCtgg 693
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 672 AGGAGGAGGAGCTTACGGCGGAGGAGGAGCACATGGAGGTGGCTATGGAAGTGGTGGTGG 731
Query 694 tgaaggaggtggttatggaggaggtgctgcaggaggatatggtggtggcggtggaggagg 753
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 732 TGAAGGAGGTGGCTATGGAGGAGGTGCAGCAGGAGGATATGGTGGTGGCGGTGGAGGAGG 791
Query 754 agaaggaggaggcggtggttacggtggtgaacatggaggtggttcaggcggaggtcacgg 813
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 AGAAGGAGGAGGCGGTAGTTACGGTGGTGAACATGGAGGTGGTTCAGGCGGAGGTCACGG 851
Query 814 tggtggtggcggtCACGGCGGCGGTGGAGGCTATGCCCCATGAAGAAACCAACTTAAGAT 873
||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 852 TGGTGGTGGTGGTCACGGCGG---TGGAGGCTATGCCCCATGAGGAAACCAACTTAAGAT 908
Query 874 CAGCCAAAAGAAACGCTGAAAAATAAAAGATAATCTGTGGAGGGGTATACAAATTTAAAT 933
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 909 CAGCCAAAAGAAAGGCTGAAAAATAAAAGATAATCTGTGGAGGGGTATACAAATTAAAAT 968
Query 934 GCCTA-T-TT-CATAACATTTTGTATCCATTATTATTGAACGTTGTGTTGTATTTTCATA 990
||||| | || || |||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 969 GCCTACTATTTCAAAACATTTTGTATCCATTATTATTGAACGTTGTATTGTATTTTCCTA 1028
Query 991 ATAATTGAATATTTTATTGTCTTATCATT 1019
|||||||||||||||||||||||||||||
Sbjct 1029 ATAATTGAATATTTTATTGTCTTATCATT 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49932742118
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5