BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494309
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46700.1 | Symbols: TET1, TRN2 | Tetraspanin family protein ... 1628 0.0
> AT5G46700.1 | Symbols: TET1, TRN2 | Tetraspanin family protein
| chr5:18950917-18952629 FORWARD LENGTH=1118
Length=1118
Score = 1628 bits (881), Expect = 0.0
Identities = 1048/1127 (93%), Gaps = 17/1127 (2%)
Strand=Plus/Plus
Query 1 GAAtctttttctttttctgtctctcttt-agttataattctatctctctctctctATTac 59
|||||||||||||||||||||||||||| |||| |||||||| | |||||||||||| |
Sbjct 1 GAATCTTTTTCTTTTTCTGTCTCTCTTTAAGTT-CAATTCTAT-T-TCTCTCTCTATTTC 57
Query 60 aaaccaaaacagatttcaagaacacaaaaacagagttaaaaactctcacctctcccaaaa 119
||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 58 AAACC-AAACAGATTTCAAGAACACAAAAACAGAGTT-AAAACTCTCATCTCTCCCAAAA 115
Query 120 aaGATGCCTTTAAGTAACAATGTAATCGGTTGCATAAACTTCATCACCGTCCTCCTCTCT 179
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 116 AAGATGCCTTTAAGCAACAATGTAATTGGTTGCATAAACTTCATCACCGTCCTCCTCTCC 175
Query 180 ATTCCGGTCATCGGCGCCGGAATCTGGCTAGCCATCGGAACAGTAAACTCCTGCGTCAAG 239
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 176 ATTCCGGTCATCGGCGCCGGAATCTGGCTAGCCATAGGAACAGTAAACTCATGCGTCAAG 235
Query 240 ATTCTTCAGTGGCCAGTAATAATCCTCGGAGTCCTAATCCTCTTAGTGGGTCTCGCTGGT 299
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 236 CTTCTTCAATGGCCAGTAATAATCCTCGGAGTCTTAATCCTCTTAGTGGGTCTCGCTGGT 295
Query 300 TTCATTGGAGGGTTTTGGAGAATCACATGGCTTCTAGTTGTTTACTTAATAGCCATGCTT 359
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 296 TTCATTGGAGGGTTTTGGAGAATCACATGGCTTCTTGTTGTTTACTTAATCGCCATGCTT 355
Query 360 GTTCTCATTGTACTTTTGGG-TGTTCTTGTCGGATTTATTTACATGGTTACCATTAA-AG 417
||||||||||||||||||| || |||||||||||||||||||||||||||| ||| ||
Sbjct 356 ATTCTCATTGTACTTTTGGGTTG-CCTTGTCGGATTTATTTACATGGTTACCA-TAAGAG 413
Query 418 GCGCTGGTCATCCAGAACCAAGTAGAGCTTATCTTGAGTATAGTCTTCAAGATTACTCTA 477
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 414 GCTCTGGTCATCCAGAACCAAGTAGAGCTTATCTTGAGTATAGTCTTCAAGATTTCTCTG 473
Query 478 CTTGGTTACGTAGAAGAGTTCAGAGATCTTATAAATGGGAAAGGATTCGTACTTGTTTGA 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GTTGGTTACGTAGAAGAGTTCAGAGATCTTATAAATGGGAAAGGATTCGTACTTGTTTGA 533
Query 538 GTACTACTTCTATTTGCCCTGAACTTAATCAGAGATTCACTTTGGCTTTAGATTTCTTTA 597
|||| ||| | |||||||||||||| |||||||||| |||||||||| ||||||||| |
Sbjct 534 GTACAACTACCATTTGCCCTGAACTAAATCAGAGATACACTTTGGCTCAAGATTTCTTCA 593
Query 598 ATGCTCATCTTGATCCCATTCAATCTGGTTGCTGCAAGCCCCCAACAAAATGTGGTTTCA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 594 ATGCTCATCTTGATCCCATTCAATCTGGTTGCTGCAAGCCCCCAACAAAATGTGGATTCA 653
Query 658 CATTTGTAAACCCAACTTATTGGATAAGTCCCATAGATATGTCTGCTGATATGGATTGTT 717
||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 CATTTGTTAATCCTACTTATTGGATAAGTCCCATAGATATGTCTGCTGATATGGATTGTC 713
Query 718 TACAAT-GGAGCAATGATCAAAACACTTTGTGTTACAGTTGTGATTCTTGTAAAGCCGGT 776
|| ||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 714 TA-AATTGGAGCAATGACCAAAACACTTTGTGTTACACTTGTGATTCTTGTAAAGCCGGC 772
Query 777 TTGCTAGCAAATATTAAGATAGATTGGTTAAAAGCGGATATCTTTCTCCTTTTGGCGCTA 836
||||| |||||||||||| |||||||||||||||||||||||||||| || ||||||||
Sbjct 773 TTGCTCGCAAATATTAAGGTAGATTGGTTAAAAGCGGATATCTTTCTACTCTTGGCGCTT 832
Query 837 ATCGGGTTGATCATCGTTTACATTATCGGTTGCTGCGCGTTCCGAAATGCGGAAACTGAG 896
||||| ||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 833 ATCGGATTGATTATCGTCTACATTATCGGGTGCTGCGCATTCCGTAATGCGGAAACTGAG 892
Query 897 GATATCTTCAGGAAGTACAAGCAGGGTTATACTTGATCAAGATGAGAAGTTTAGTGGCAA 956
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GATATTTTCAGGAAGTACAAGCAGGGTTATACTTGATCAAGATGAGAAGTTTAGTGGCAA 952
Query 957 AACTGTGAGGAATTTTAAAACTTATTGGATTCCTTTACTTTAGTTTCTCTACGTTTTGGC 1016
||||| |||||||||||| | ||| ||||||||| || ||||||||||||||||||||||
Sbjct 953 AACTGCGAGGAATTTTAATATTTACTGGATTCCTGTATTTTAGTTTCTCTACGTTTTGGC 1012
Query 1017 CCCTGTAGTCTGTTTTTATGTGCACTACCAGAACATTTGTTGTAACTGGAGGCATG-TGT 1075
||||||||| ||||||| |||| |||||| ||||||| |||||||||||| | || |||
Sbjct 1013 CCCTGTAGTATGTTTTTGTGTGAACTACCTGAACATTCGTTGTAACTGGAAG-ATTATGT 1071
Query 1076 TGTCTATCT--CTTTGATTTGG-TTTGTGAAACTTAATTAATTATCT 1119
||| ||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 1072 TGTATATCTATCTTTGATTTGGGTTTGTGAAACTTAACTAATTATCT 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5