BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494310
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46690.1 | Symbols: bHLH071 | beta HLH protein 71 | chr5:189... 1851 0.0
> AT5G46690.1 | Symbols: bHLH071 | beta HLH protein 71 | chr5:18945615-18947637
FORWARD LENGTH=1211
Length=1211
Score = 1851 bits (1002), Expect = 0.0
Identities = 1148/1219 (94%), Gaps = 8/1219 (1%)
Strand=Plus/Plus
Query 1 AAGGAATAAACGTCGTGAAGAGCAAAATGACTCTAGAAGCTTTATCATCAAACGGTCTCT 60
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1 AAGGAATAAACTTCGTGAAGAG--AAATGACTCTAGAAGCTTTATCATCAAACGGTCTTT 58
Query 61 TAAACTTTTTGCTCTCCGAAACTCTTTCACCAACTCCATTCAAGTCTCTCGTCGATCTCG 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TAAACTTTTTGCTCTCTGAAACTCTTTCACCAACTCCATTCAAGTCTCTCGTCGATCTCG 118
Query 121 AGCCATTGCCGGAAAATGATGTCATCATATCCACGAAGACAATTCCGGAGATATCTTATC 180
||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||| |||
Sbjct 119 AGCCATTGCCGGAAAATGATGTCATCATATCGAAGAACACAATTTCGGAGATATCTAATC 178
Query 181 AAGAAACGCCACCACCGCGACAACCACCAGCGACCAATCGAGGGAAGAAGCGGAGGAGGA 240
||||| ||||||||| ||||||||||||||| || |||||||||||||||||| ||||||
Sbjct 179 AAGAACCGCCACCACAGCGACAACCACCAGCTACGAATCGAGGGAAGAAGCGGCGGAGGA 238
Query 241 GGAAGCCTAGGGTTTGCAAAAACGAAGAAGAAGCTGAGAATCAACGAATGACTCACATTG 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 GGAAGCCTAGGGTTTGCAAAAACGAGGAAGAAGCTGAGAATCAACGAATGACTCACATTG 298
Query 301 CCGTCGAAAGAAACCGAAGAAGACAAATGAATCAACATCTCTCTGTCTTGCGATCTCTCA 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CCGTCGAAAGAAATCGAAGAAGACAAATGAATCAACATCTCTCTGTCTTGCGATCTCTCA 358
Query 361 TGCCTCAACCTTTTGCTCACAAGGGTGATCAAGCTTCAATAGTTGGTGGAGCCATAGATT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGCCTCAACCTTTTGCTCACAAGGGTGATCAAGCTTCAATAGTTGGTGGAGCCATAGATT 418
Query 421 TCATCAAAGAACTTGAACACAAATTACTATCTCTTGAAGCTCAAAAGCGTCATAATGCTA 480
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 419 TCATCAAAGAACTTGAACACAAATTACTATCTCTTGAAGCTCAAAAACATCATAATGCTA 478
Query 481 AATTAAACCAGTCGGTTACTTCTTCAACAAGTCAAGACTCAAATGGTGAACAAGAGAATC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AATTAAACCAGTCGGTTACTTCTTCAACAAGTCAAGACTCAAATGGTGAACAAGAGAATC 538
Query 541 CTCATCAACCGTCTTCACTATCTCTATCGCATTTCTTTCTTCATTCCTACGATCCCAGCC 600
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 539 CTCATCAACCATCTTCACTATCTCTATCGCAGTTCTTTCTTCATTCATACGATCCGAGCC 598
Query 601 AGGAAAATAGAAACGGCTCAACAAGCTCGGTGAAAACCCCTATGGAAGATCTTGAGGTCA 660
| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 599 AAGAGAATAGGAACGGCTCAACAAGCTCGGTGAAAACCCCTATGGAAGATCTTGAGGTGA 658
Query 661 CTCTAATCGAAACTCATGCTAACATCAGAATCTTGTCGAGGAGAAGAGGTTTCCGGTGGA 720
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 659 CTCTAATCGAAACTCATGCTAACATCAGAATCTTGTCGAGAAGAAGAGGTTTCCGGTGGA 718
Query 721 GCACGGTGGCCACCGCGAGGCCACCACAACTTTCGAAGCTGGTGTCTGCTCTGCAATCGC 780
||||| |||||||| | | || || || ||||||||||||||| || |||| |||||||
Sbjct 719 GCACGTTGGCCACCACCAAACCGCCGCAGCTTTCGAAGCTGGTGGCTTCTCTACAATCGC 778
Query 781 TTTCCCTCTCCATTCTTCACCTTAGTGTCACAACATTGGACACTTACGTTATTTACTCCA 840
| |||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct 779 TGTCCCTCTCCATTCTTCACCTTAGTGTCACAACATTGGACAATTATGCTATTTACTCCA 838
Query 841 TCAGCGCCAAGGTGGAAGAGAGTTGCCAGCTAAGTTCAGTAGATGACATTGCAGGAGCAG 900
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCAGCGCTAAGGTGGAAGAGAGTTGCCAGCTAAGTTCAGTAGATGACATTGCAGGAGCAG 898
Query 901 TTCACCACATGCTAAGTATCATTGAAGAGGAGCCTTTTTGTTGTTCATCAATGTCAGAAT 960
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 899 TTCACCACATGCTAAGTATCATTGAAGAGGAGCCTTTTTGTTGCTCATCAATGTCAGAAT 958
Query 961 TACCATTTGACTTCTCTTTGAATCACTCAAATGCCACTCATTCTCTCTGAGGAATCTctt 1020
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 959 TACCATTTGACTTCTCTTTGAATCACTCAAATGTCACTCATTCTCTCTGAGAAATCTCTT 1018
Query 1021 tttttgttgttgttgttccttcttttagttttatcacataacacatctttaatctttttt 1080
|||| ||||||||| |||||||||||| |||||||||||| |||||||||| | ||||||
Sbjct 1019 TTTT-GTTGTTGTTATTCCTTCTTTTAATTTTATCACATAGCACATCTTTAGT-TTTTTT 1076
Query 1081 tttCTTTCAGAATAAAGAAAGGTATAAGCTTTCTTTTTAATTCCTAGGTTCTTTTTTCTG 1140
||| | |||||| |||||| |||||||||||||| || ||||||||||||||| |||
Sbjct 1077 TTT-T--CAGAATGAAGAAACACATAAGCTTTCTTTTAAAATCCTAGGTTCTTTTT-CTG 1132
Query 1141 ACTATGTAAAGACTAAATGTGAATTTACAATGACACATAACATATTAGTTGTTTTAGTCT 1200
||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||||| |||
Sbjct 1133 ACTTTGTAAAGGCTAAATGTGAATTTATAATGGCACATAACATATTAGTTGTTTTACTCT 1192
Query 1201 TCTTTTTATGCACTTTCTG 1219
| ||||||||| ||||||
Sbjct 1193 TAATTTTATGCATTTTCTG 1211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59889250185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5