BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494311
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46680.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2172 0.0
> AT5G46680.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:18940969-18942602 FORWARD LENGTH=1634
Length=1634
Score = 2172 bits (1176), Expect = 0.0
Identities = 1338/1418 (94%), Gaps = 4/1418 (0%)
Strand=Plus/Plus
Query 21 TCTCGGAGAATGGTTCGTGGATTGATGAAATTCCCAGGAATCTCAACGAAGTTATTGAAC 80
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 141 TCTCGAAGAATGGTTCGTGGATTGATGAAATTCCCAGGAATCTCAACGAAGTTATTAAAC 200
Query 81 ATAAGCGTTGATTCTCTCTGCAAATTTCGAAACTTGGAGAAG-GCAGAAACATTACTCAT 139
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 201 ATAAGCGTTAATTCTCTCTGCAAATTTCGAAACTTGGAG-AGAGCAGAAACATTACTCAT 259
Query 140 AGACGGAATCAGATTAGGTGTTCTTCCAGATGTTATCACTTACAACACTTTAATCAAAGG 199
||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 260 AGACGGAATCAGATTAGGTGTTCTTCCTGATGTGATCACTTACAACACTCTAATCAAAGG 319
Query 200 TTACTCTCGTTTCATTGGAATCGACGAAGCTTATGCTGTTACACGTCGTATGAGAGAAGC 259
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 320 GTACACTCGTTTCATTGGAATCGACGAAGCTTATGCTGTAACACGTCGTATGAGAGAAGC 379
Query 260 TGGTATCGAACCTGATGTTGCTACTTATAATTCATTGATCTCTGGAGCTGCTAAAAACTT 319
||| |||||||| |||||| ||||||| |||||||||||||| |||||||||||||||||
Sbjct 380 TGGGATCGAACCAGATGTTACTACTTACAATTCATTGATCTCAGGAGCTGCTAAAAACTT 439
Query 320 GATGTTGAATCGTGTACTCCAACTGTTCGACGAAATGCTTCACTCAGGTTTGTCTCCTGA 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GATGTTGAATCGTGTACTCCAACTGTTCGACGAAATGCTTCACTCAGGTTTGTCTCCTGA 499
Query 380 TATGTGGAGTTATAATACTTTAATGTCTTGTTACTTTAGATTAGGGAAACATGGAGAAGC 439
|||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 500 TATGTGGAGTTATAATACTTTAATGTCTTGTTACTTCAAATTAGGGAGACATGGAGAAGC 559
Query 440 GTTTCGGATTCTTCATGAGGATATTCGTTTAGCTGGGTTGGTTCCGGGGATCGATACGTA 499
|||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||| ||
Sbjct 560 GTTTAAGATTCTTCATGAGGATATTCATTTAGCTGGGTTGGTTCCTGGGATTGATACTTA 619
Query 500 TAATATTCTGCTTGATGCGCTTTGTAAAAGCGGTCATACGGATAATGCGATTGAGTTGTT 559
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TAACATTCTGCTTGATGCGCTTTGTAAAAGCGGTCATACGGATAATGCGATTGAGTTGTT 679
Query 560 TAAGCATTTGAAGAGTCGGGTTAAACCGGAGCTTATGACGTATAACATTCTTATTAATGG 619
||||||| ||||||||||||||||||| ||||||||||||||||| ||||| || |||||
Sbjct 680 TAAGCATCTGAAGAGTCGGGTTAAACCCGAGCTTATGACGTATAATATTCTCATCAATGG 739
Query 620 TCTTTGTAAATCGAGAAGGGTTGGGTCTGTGAATTGGATGCTGAGAGAGCTTAGGAAAGC 679
|||||||||||||||||||||||| |||||| |||||||| |||||||||||| |||| |
Sbjct 740 TCTTTGTAAATCGAGAAGGGTTGGTTCTGTGGATTGGATGATGAGAGAGCTTAAGAAATC 799
Query 680 GGGTTATACTCCGAATGCTGTTACGTATACAACGGTGCTTAAAATGTATTTTAAGACTAA 739
||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 800 GGGCTATACTCCGAATGCGGTTACGTATACAACGATGCTTAAAATGTATTTTAAGACTAA 859
Query 740 GAGGATTGAGAAAGGGCTTGAGCTGTTTTTGAAGATGAAGAAAGAAGGGTATACGTTTGA 799
||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 860 GAGGATTGAGAAAGGTCTTCAGTTGTTTTTGAAGATGAAGAAAGAAGGGTATACGTTTGA 919
Query 800 CGGGTATGCGAATTGTGCGGTTGTTAGTGCTTTGATTAAAACCGGAAGAGGAGAGGAGGC 859
||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 920 CGGGTTTGCGAATTGTGCGGTTGTTAGTGCGTTGATTAAAACCGGAAGAGCAGAGGAGGC 979
Query 860 GTACGGGTGTATGAACGAGCTGGTGAGAAGCGGTACACGGAGTCAAGACATTGTTTCGTA 919
||| | ||||||| ||||||| |||||||| |||||| ||||||||||||||||||||||
Sbjct 980 GTATGAGTGTATGCACGAGCTTGTGAGAAGTGGTACAAGGAGTCAAGACATTGTTTCGTA 1039
Query 920 CAACACGTTGTTGAATATGTATTTTAAAGATGGGAATTTGGATGCAGTAGATGATCTATT 979
||| || ||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1040 CAATACATTGTTGAATTTGTATTTTAAAGATGGGAACTTGGATGCAGTAGATGATCTATT 1099
Query 980 GGAGGAGATTGAGATGAAAGGATTGAAACCTGATGACTACACGCATACGATTATAGTCAA 1039
|||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||
Sbjct 1100 GGAGGAGATTGAGATGAAGGGGTTGAAACCTGATGACTATACTCATACGATTATAGTCAA 1159
Query 1040 TGGTTTGTTAAAAATAGGTCA-TACGGGAGGAGCCGAGAAGCATTTGGCACGTATCGGAG 1098
|||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 1160 TGGTTTGTTAAATATAGG-CAATACGGGAGGAGCCGAGAAGCATTTGGCATGTATCGGAG 1218
Query 1099 AGATGGGGATGCAGCCGAGTGTCGTCACTTGTAACTGTTTGATTGATGGGTTGTGCAAAG 1158
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1219 AGATGGGGATGCAGCCGAGTGTTGTCACTTGTAACTGTTTGATTGATGGGTTGTGCAAAG 1278
Query 1159 CGGGCCACGTAGATCGTGCGATGAGGTTGTTTGCGTCAATGGAAGTTAGAGATGAGTTCA 1218
| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 CAGGTCATGTAGATCGTGCAATGAGGTTGTTTGCGTCAATGGAAGTTAGAGATGAGTTCA 1338
Query 1219 CTTACACTTCTGTTGTGCATAATCTATGCAAAGACGGGCGGCTTGTTTGTGCTTCGAAGC 1278
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1339 CTTACACTTCTGTTGTGCATAATCTATGCAAAGACGGACGGCTTGTTTGTGCTTCGAAGC 1398
Query 1279 TACTCTTGTCGTGTTACAACAAAGGAATGAAGATTCCGTCATCGGCTAGACGAGCTGTGT 1338
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1399 TGCTCTTGTCGTGTTACAATAAAGGAATGAAGATTCCGTCATCGGCTAGACGAGCAGTGT 1458
Query 1339 TGTCCGGTTTAAGGGAGACGGTATCTCACCAGGCAGCAAGGAAGACACATTTCAAAATCA 1398
||||||| || |||||||||||||| |||| |||||||||||||||||| |||||||||
Sbjct 1459 TGTCCGGCATACGGGAGACGGTATCTTACCAAGCAGCAAGGAAGACACATATCAAAATCA 1518
Query 1399 AAGCAGCTATTGAGTGTAATGCACTAATGTATCCTTAA 1436
|||||||||||||||||||| |||||||||| ||||||
Sbjct 1519 AAGCAGCTATTGAGTGTAATACACTAATGTACCCTTAA 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72589988070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5