BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494313
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46640.1 | Symbols: | AT hook motif DNA-binding family prot... 1751 0.0
> AT5G46640.1 | Symbols: | AT hook motif DNA-binding family protein
| chr5:18924477-18926575 FORWARD LENGTH=1637
Length=1637
Score = 1751 bits (948), Expect = 0.0
Identities = 1315/1479 (89%), Gaps = 78/1479 (5%)
Strand=Plus/Plus
Query 1 TCCTCGAGACTCTCTCTGTATGTGTGTGA-AA---ag-a--gagagagagagagagagaC 53
|||||||||||||||||||||||||| || || || | ||||||||||||||||||
Sbjct 1 TCCTCGAGACTCTCTCTGTATGTGTGCGAGAAGCGAGAAGCGAGAGAGAGAGAGAGAGAG 60
Query 54 TTGTTAGCTCTCACACGCTTTCTCTATTTTCTCGGAATTCACAAAACAGAAAGTTTCAAT 113
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TTGTTAG--CTCACACGCTTTCTCTATTTTCTCGGAATTCACAAAACAGAAAGTTTC-AT 117
Query 114 -CTTTACGA-AATTTTTGCCGAAAGAAACAATCTTTGAGTTTGA--T-TTCTT-CTT-C- 165
|||||||| || || ||||||||||||||||||||||||||| | ||||| ||| |
Sbjct 118 CCTTTACGAGAA-TTAAGCCGAAAGAAACAATCTTTGAGTTTGATTTCTTCTTCCTTCCT 176
Query 166 -CT-TC-CT-T-CTCTAATGGATTCCAGAGATATCCCACCGTCACAGAACCAGCTTCAAC 220
|| || || | ||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 177 TCTCTCTCTCTGCTCTAATGGATTCCAGAGACATCCCACCGTCACATAACCAGCTTCAAC 236
Query 221 CACCACCGGGAATGTTAATGTCTCATTACCGTAACCCTAACGCCGCCGCCGCTGCATTAA 280
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 237 CACCACCGGGAATGTTAATGTCTCATTACCGTAACCCTAACGCCGCCGCTTCACCATTAA 296
Query 281 TGGTTCCTACTTCCACATCTCAATCGATTCAACATCATCATCGTCTTCCTTTTGGcaatc 340
||||||| ||||||||||||||| |||||||||| | | |||||||||||||||||||
Sbjct 297 TGGTTCCCACTTCCACATCTCAACCGATTCAACA-C--CCTCGTCTTCCTTTTGGCAAT- 352
Query 341 aacaacaacaacaatctcaaacgtttcat---cag---caacaacaaATGGATCAGAAGA 394
|||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 353 -----CAACAACAATCTCAAACGTTTCATCAGCAGCAACAACAACAAATGGATCAGAAGA 407
Query 395 CTCTTGAATCGCTTGGTTTTGGTGATGGATCGCCTTCTTCTCAAGCGATGCGATTCGGGA 454
|||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||
Sbjct 408 CTCTTGAATCTCTTGGATTTGGTGATGGATCACCTTCTTCTCAACCGATGCGATTCGGGA 467
Query 455 TCGAGGATCAGAATCAGAATCAGCAACTTCAAGTGAAGAAGAAGCGAGGAAGGCCAAGAA 514
|| ||| | |||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 468 TC---GAT--G-ATCAGAATCAGCAACTGCAAGTGAAGAAGAAGCGAGGAAGGCCGAGAA 521
Query 515 AGTATACTCCTGATGGTAGCATTGCTTTAGGTTTAGCTCCGACGTCTCCTCTTCTCTCTG 574
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 522 AGTATACTCCTGATGGTAGCATTGCTTTAGGTTTAGCTCCTACGTCTCCTCTTCTCTCTG 581
Query 575 CAGCTTCTAATTCTTACGGTGGTGGTGATGGTGGTGTTGGAGATAGTGGTGGAGGAGGAG 634
||||||||||||||||| ||||| ||||||||||||||||||||| |||
Sbjct 582 CAGCTTCTAATTCTTAC------GGTGAGGGTGGTGTTGGAGATAGTGGT------GGA- 628
Query 635 GTAATGGAAACTCTGCTGATCCTCCTGCTAAACGAAACAGAGGACGACCTCCTGGTTCTA 694
||||||||||||| |||||| |||| |||||| ||||||||| | |||||||||||||
Sbjct 629 --AATGGAAACTCTGTTGATCCACCTGTTAAACGTAACAGAGGAAGGCCTCCTGGTTCTA 686
Query 695 GCAAGAAACAGCTTGATGCTTTAGGAGGAACTGCAGGAGTAGGGTTTACACCACATGTCA 754
| |||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 687 GTAAGAAACAGCTTGATGCTTTAGGAGGAACTTCAGGAGTTGGGTTTACACCTCATGTCA 746
Query 755 TTGAAGTGAAGACAGGAGAGGACATAGCGTCAAAGGTGATGGCTTTTTCGGAGCAAGGGC 814
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 747 TTGAAGTGAACACAGGAGAGGACATAGCGTCAAAGGTGATGGCTTTTTCGGATCAAGGGT 806
Query 815 CACGAACGATTTGTATTCTCTCTGCAAGTGGTGCGGTTGGTAGAGTGACACTTCGTCAAG 874
|| |||| |||||||||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct 807 CAAGAACAATTTGTATTCTCTCTGCAAGTGGTGCAGTTTCTAGAGTGATGCTTCGTCAAG 866
Query 875 CTTCTCATTCTAGTGGAATCGTTACTTATGAGGGACGATTCGAGATCATTACTCTCTCAG 934
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 867 CTTCTCATTCTAGTGGAATCGTTACTTATGAGGGACGATTTGAGATCATTACTCTCTCAG 926
Query 935 GCTC-GTTTTTGAATTATGAGGTGAATGGTTCCACCAACAGAAGTGGTAACTTGAGTGTG 993
|||| || || |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 927 GCTCAGTCTT-GAATTATGAGGTAAATGGTTCCACCAACAGAAGTGGTAACTTGAGTGTG 985
Query 994 TCTTTGGCTGGACCCGATGGCCGG-ATTTTAGGTGGTAGTGTAGTCGGTCAGCTAGTAGC 1052
||||||||||||| |||||| || || ||||||| |||||||| ||| | ||||||||
Sbjct 986 GCTTTGGCTGGACCTGATGGC-GGCATCGTAGGTGGCAGTGTAGTTGGTAATCTAGTAGC 1044
Query 1053 TGCAACACAAGTCCAGGTCATAGTAGGAAGCTTTGTTGCGGAAGCAAAGAAACCGAAACC 1112
|||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 1045 TGCAACACAAGTCCAGGTGATAGTGGGAAGCTTTGTTGCAGAAGCAAAGAAACCGAAACA 1104
Query 1113 AAGTAGCATTAACAATGCTCGGGGCCAGAATCCTGAGCCGGCTTCAGCGCCGGCTAACAT 1172
|||||| |||||| ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1105 AAGTAGTGTTAACATTGCTCGGGGGCAGAATCCTGAACCGGCTTCAGCGCCGGCTAACAT 1164
Query 1173 GTTGAACTTTGGATCAGTCTCTCAAGGGCCATCGAGTGAGTCATCAGAAGAGAATGGGAG 1232
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||
Sbjct 1165 GTTGAACTTTGGATCAGTCTCTCAAGGACCATCGAGCGAGTCATCAGAAGAGAATGAGAG 1224
Query 1233 TGGTTCTCCTGCAATGCACCGTGACAATACTAATGGGATTTATGGAGCTCAACAACAACA 1292
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1225 CGGTTCTCCTGCAATGCACCGTGACAATAATAATGGGATATATGGAGCTCAACAACAACA 1284
Query 1293 AC--C--C--C-T-T-CATCCTCATCCGATGCAAATGTACCACCATCTTTGGCCTAATCA 1343
|| | | | | | |||||||||| ||||||||||||||| ||||||||| |||||||
Sbjct 1285 ACAACAACAACCTCTTCATCCTCATCAGATGCAAATGTACCAACATCTTTGGTCTAATCA 1344
Query 1344 TGGTCAATAAAATGGA-CTTGCTCTAGAAATTCGTTTCGGTTTTGGTTATGGTTAGGGCT 1402
|||||||||||||| | | | | || || ||||| |||||||||| ||||| || |
Sbjct 1345 TGGTCAATAAAATGAAGCG-GAAATT-AATTT-GTTTCCGTTTTGGTTACGGTTATGGTT 1401
Query 1403 TGATTTCTTCTTGTTGTTTACACAAC-CTTAGGAAGATT 1440
||||||||| |||||||||| ||| |||| |||||||
Sbjct 1402 TGATTTCTTGTTGTTGTTTAGGCAAATCTTAAGAAGATT 1440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72037782075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5