BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494313 Length=1461 Score E Sequences producing significant alignments: (Bits) Value AT5G46640.1 | Symbols: | AT hook motif DNA-binding family prot... 1751 0.0 > AT5G46640.1 | Symbols: | AT hook motif DNA-binding family protein | chr5:18924477-18926575 FORWARD LENGTH=1637 Length=1637 Score = 1751 bits (948), Expect = 0.0 Identities = 1315/1479 (89%), Gaps = 78/1479 (5%) Strand=Plus/Plus Query 1 TCCTCGAGACTCTCTCTGTATGTGTGTGA-AA---ag-a--gagagagagagagagagaC 53 |||||||||||||||||||||||||| || || || | |||||||||||||||||| Sbjct 1 TCCTCGAGACTCTCTCTGTATGTGTGCGAGAAGCGAGAAGCGAGAGAGAGAGAGAGAGAG 60 Query 54 TTGTTAGCTCTCACACGCTTTCTCTATTTTCTCGGAATTCACAAAACAGAAAGTTTCAAT 113 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 61 TTGTTAG--CTCACACGCTTTCTCTATTTTCTCGGAATTCACAAAACAGAAAGTTTC-AT 117 Query 114 -CTTTACGA-AATTTTTGCCGAAAGAAACAATCTTTGAGTTTGA--T-TTCTT-CTT-C- 165 |||||||| || || ||||||||||||||||||||||||||| | ||||| ||| | Sbjct 118 CCTTTACGAGAA-TTAAGCCGAAAGAAACAATCTTTGAGTTTGATTTCTTCTTCCTTCCT 176 Query 166 -CT-TC-CT-T-CTCTAATGGATTCCAGAGATATCCCACCGTCACAGAACCAGCTTCAAC 220 || || || | ||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 177 TCTCTCTCTCTGCTCTAATGGATTCCAGAGACATCCCACCGTCACATAACCAGCTTCAAC 236 Query 221 CACCACCGGGAATGTTAATGTCTCATTACCGTAACCCTAACGCCGCCGCCGCTGCATTAA 280 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 237 CACCACCGGGAATGTTAATGTCTCATTACCGTAACCCTAACGCCGCCGCTTCACCATTAA 296 Query 281 TGGTTCCTACTTCCACATCTCAATCGATTCAACATCATCATCGTCTTCCTTTTGGcaatc 340 ||||||| ||||||||||||||| |||||||||| | | ||||||||||||||||||| Sbjct 297 TGGTTCCCACTTCCACATCTCAACCGATTCAACA-C--CCTCGTCTTCCTTTTGGCAAT- 352 Query 341 aacaacaacaacaatctcaaacgtttcat---cag---caacaacaaATGGATCAGAAGA 394 |||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 353 -----CAACAACAATCTCAAACGTTTCATCAGCAGCAACAACAACAAATGGATCAGAAGA 407 Query 395 CTCTTGAATCGCTTGGTTTTGGTGATGGATCGCCTTCTTCTCAAGCGATGCGATTCGGGA 454 |||||||||| ||||| |||||||||||||| |||||||||||| ||||||||||||||| Sbjct 408 CTCTTGAATCTCTTGGATTTGGTGATGGATCACCTTCTTCTCAACCGATGCGATTCGGGA 467 Query 455 TCGAGGATCAGAATCAGAATCAGCAACTTCAAGTGAAGAAGAAGCGAGGAAGGCCAAGAA 514 || ||| | |||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 468 TC---GAT--G-ATCAGAATCAGCAACTGCAAGTGAAGAAGAAGCGAGGAAGGCCGAGAA 521 Query 515 AGTATACTCCTGATGGTAGCATTGCTTTAGGTTTAGCTCCGACGTCTCCTCTTCTCTCTG 574 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 522 AGTATACTCCTGATGGTAGCATTGCTTTAGGTTTAGCTCCTACGTCTCCTCTTCTCTCTG 581 Query 575 CAGCTTCTAATTCTTACGGTGGTGGTGATGGTGGTGTTGGAGATAGTGGTGGAGGAGGAG 634 ||||||||||||||||| ||||| ||||||||||||||||||||| ||| Sbjct 582 CAGCTTCTAATTCTTAC------GGTGAGGGTGGTGTTGGAGATAGTGGT------GGA- 628 Query 635 GTAATGGAAACTCTGCTGATCCTCCTGCTAAACGAAACAGAGGACGACCTCCTGGTTCTA 694 ||||||||||||| |||||| |||| |||||| ||||||||| | ||||||||||||| Sbjct 629 --AATGGAAACTCTGTTGATCCACCTGTTAAACGTAACAGAGGAAGGCCTCCTGGTTCTA 686 Query 695 GCAAGAAACAGCTTGATGCTTTAGGAGGAACTGCAGGAGTAGGGTTTACACCACATGTCA 754 | |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| Sbjct 687 GTAAGAAACAGCTTGATGCTTTAGGAGGAACTTCAGGAGTTGGGTTTACACCTCATGTCA 746 Query 755 TTGAAGTGAAGACAGGAGAGGACATAGCGTCAAAGGTGATGGCTTTTTCGGAGCAAGGGC 814 |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 747 TTGAAGTGAACACAGGAGAGGACATAGCGTCAAAGGTGATGGCTTTTTCGGATCAAGGGT 806 Query 815 CACGAACGATTTGTATTCTCTCTGCAAGTGGTGCGGTTGGTAGAGTGACACTTCGTCAAG 874 || |||| |||||||||||||||||||||||||| ||| |||||||| |||||||||| Sbjct 807 CAAGAACAATTTGTATTCTCTCTGCAAGTGGTGCAGTTTCTAGAGTGATGCTTCGTCAAG 866 Query 875 CTTCTCATTCTAGTGGAATCGTTACTTATGAGGGACGATTCGAGATCATTACTCTCTCAG 934 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 867 CTTCTCATTCTAGTGGAATCGTTACTTATGAGGGACGATTTGAGATCATTACTCTCTCAG 926 Query 935 GCTC-GTTTTTGAATTATGAGGTGAATGGTTCCACCAACAGAAGTGGTAACTTGAGTGTG 993 |||| || || |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 927 GCTCAGTCTT-GAATTATGAGGTAAATGGTTCCACCAACAGAAGTGGTAACTTGAGTGTG 985 Query 994 TCTTTGGCTGGACCCGATGGCCGG-ATTTTAGGTGGTAGTGTAGTCGGTCAGCTAGTAGC 1052 ||||||||||||| |||||| || || ||||||| |||||||| ||| | |||||||| Sbjct 986 GCTTTGGCTGGACCTGATGGC-GGCATCGTAGGTGGCAGTGTAGTTGGTAATCTAGTAGC 1044 Query 1053 TGCAACACAAGTCCAGGTCATAGTAGGAAGCTTTGTTGCGGAAGCAAAGAAACCGAAACC 1112 |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| Sbjct 1045 TGCAACACAAGTCCAGGTGATAGTGGGAAGCTTTGTTGCAGAAGCAAAGAAACCGAAACA 1104 Query 1113 AAGTAGCATTAACAATGCTCGGGGCCAGAATCCTGAGCCGGCTTCAGCGCCGGCTAACAT 1172 |||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1105 AAGTAGTGTTAACATTGCTCGGGGGCAGAATCCTGAACCGGCTTCAGCGCCGGCTAACAT 1164 Query 1173 GTTGAACTTTGGATCAGTCTCTCAAGGGCCATCGAGTGAGTCATCAGAAGAGAATGGGAG 1232 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| Sbjct 1165 GTTGAACTTTGGATCAGTCTCTCAAGGACCATCGAGCGAGTCATCAGAAGAGAATGAGAG 1224 Query 1233 TGGTTCTCCTGCAATGCACCGTGACAATACTAATGGGATTTATGGAGCTCAACAACAACA 1292 |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 1225 CGGTTCTCCTGCAATGCACCGTGACAATAATAATGGGATATATGGAGCTCAACAACAACA 1284 Query 1293 AC--C--C--C-T-T-CATCCTCATCCGATGCAAATGTACCACCATCTTTGGCCTAATCA 1343 || | | | | | |||||||||| ||||||||||||||| ||||||||| ||||||| Sbjct 1285 ACAACAACAACCTCTTCATCCTCATCAGATGCAAATGTACCAACATCTTTGGTCTAATCA 1344 Query 1344 TGGTCAATAAAATGGA-CTTGCTCTAGAAATTCGTTTCGGTTTTGGTTATGGTTAGGGCT 1402 |||||||||||||| | | | | || || ||||| |||||||||| ||||| || | Sbjct 1345 TGGTCAATAAAATGAAGCG-GAAATT-AATTT-GTTTCCGTTTTGGTTACGGTTATGGTT 1401 Query 1403 TGATTTCTTCTTGTTGTTTACACAAC-CTTAGGAAGATT 1440 ||||||||| |||||||||| ||| |||| ||||||| Sbjct 1402 TGATTTCTTGTTGTTGTTTAGGCAAATCTTAAGAAGATT 1440 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72037782075 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5