BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494317
Length=1911
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46610.1 | Symbols: | Aluminium activated malate transporte... 2525 0.0
AT4G17970.1 | Symbols: ALMT12, ATALMT12 | aluminum-activated, m... 918 0.0
> AT5G46610.1 | Symbols: | Aluminium activated malate transporter
family protein | chr5:18912667-18915779 REVERSE LENGTH=2123
Length=2123
Score = 2525 bits (1367), Expect = 0.0
Identities = 1652/1786 (92%), Gaps = 34/1786 (2%)
Strand=Plus/Plus
Query 51 AAAAAGAATGTC-GAGCAGAGTCCATGAAAGGGGCAT-GGAGATGGATGAGGAAGGCTCT 108
||||| |||||| || ||| |||||||||||| |||| ||| ||||| || |||||||||
Sbjct 37 AAAAACAATGTCGGA-CAGGGTCCATGAAAGGAGCATGGGA-ATGGAGGAAGAAGGCTCT 94
Query 109 ACAAAGATGAAGATGAAGACGAAGGTT-TTAGAACTTCCAACGAAGATCAAGAAGATTCT 167
|| || | || |||||||| |||||| || ||||||||||| |||||||||||||||||
Sbjct 95 ACTAA-A--AACATGAAGACAAAGGTTCTT-GAACTTCCAACAAAGATCAAGAAGATTCT 150
Query 168 AAAGAGTATATGGAAAGTTGGAAAAGATGATCCTAGGAGAGTGAAACATGCTTTAAAAGT 227
||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 151 AAAGAATATATGGAAAGTTGGAAAAGATGATCCAAGGAGAGTGAAACATGCTTTGAAAGT 210
Query 228 AGGAGTTTCTTTAACACTTGTGTCCTTATTGTATCTCATGGAGCCTCTCTTCAAAGGCAT 287
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 211 AGGAGTTTCGTTAACACTTGTGTCTTTATTGTATCTCATGGAGCCTCTCTTCAAAGGCAT 270
Query 288 TGGAAATAGTGCTATTTGGGCAGTCATGACCGTCGTGGTCGTCCTCGAGTTCTCTGCCGG 347
|||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 271 TGGAAACAGTGCTATTTGGGCAGTCATGACCGTTGTTGTCGTCCTAGAGTTCTCTGCCGG 330
Query 348 TGCCACGTTGTGCAAAGGGCTTAATAGAGGATTAGGGACACTAATTGCTGGATCTTTGGC 407
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 TGCAACGTTGTGCAAAGGGCTTAATAGAGGATTAGGGACACTAATTGCTGGATCTTTGGC 390
Query 408 ATTTTTCATCGAATTTGTCGCTAATGATTCCGGCAAGATTTTCCGAGCTATTTTCATTGG 467
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 391 ATTTTTCATAGAATTTGTGGCTAATGATTCCGGCAAGATTTTCCGAGCTATTTTCATTGG 450
Query 468 CGCTGCAGTTTTCATAATCGGAGCGCTGATAACCTATTTGAGATTTATTCCATACATAAA 527
||| |||||||| || || |||||| ||||||| ||| ||||||||||||||||||| ||
Sbjct 451 CGCCGCAGTTTTTATCATTGGAGCGTTGATAACATATCTGAGATTTATTCCATACATTAA 510
Query 528 AAAGAACTACGATTACGGCATGCTTATATTTCTCTTGACGTTCAATCTAATAACAGTGTC 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 511 AAAGAACTACGATTACGGCATGCTTATATTTCTCTTGACGTTCAATCTAATAACAGTATC 570
Query 588 GAGTTATAGAGTTGATACGGTGATTAAAATTGCACATGAGAGATTCTATACTATAGCCAT 647
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 571 GAGTTATAGAGTTGATACCGTGATTAAAATTGCACATGAGAGATTCTATACTATAGCCAT 630
Query 648 GGGTGTTGGCATTTGCCTACTCATGAGCCTTTTGGTTTTTCCTATTTGGTCTGGTGAGGA 707
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GGGTGTTGGTATTTGTCTGCTCATGAGCCTTTTGGTTTTTCCTATTTGGTCTGGTGAGGA 690
Query 708 CCTTCACAAATCCACCGTCGCTAAG-TTCCAAGGCCTCTCTTATTCCATTGAAGCATGTG 766
||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct 691 CCTTCACAAATCCACCGTCGCTAAGCTT-CAAGGCCTCTCCTATTCCATCGAAGCATGTG 749
Query 767 TGAATGAGTACTTTGAAGAGGAGGAGAAAAACGAAGAAACATCAGATTTATCAGAAGACA 826
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 750 TGAATGAGTACTTTGAAGAGGAGGAGAAAGACGAAGAAACATCAGATTTGTCAGAAGACA 809
Query 827 CTATCTATAACGGATATAAGACTGTTTTGGATTCCAAATCCGCCGATGAAGCACTTGCAA 886
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 CGATCTATAACGGATATAAGACTGTTTTGGATTCCAAATCCGCCGATGAAGCACTTGCAA 869
Query 887 TGTATGCAAGTTGGGAGCCAAGACACACAAGACATTGTCATAGATTTCCATGGAAACATT 946
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 870 TGTATGCAAGTTGGGAGCCAAGACACACACGACATTGTCATAGATTTCCATGGAAACATT 929
Query 947 ATGTTAAAGTTGGATCTGTTCTTCGTCTGTTTGGTTACACTGTTGTTGCTCTTCATGGTT 1006
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 930 ATGTTAAAGTTGGATCTGTTCTTCGTCAGTTTGGTTACACTGTTGTTGCTCTTCATGGTT 989
Query 1007 GCTTAAAAACCGAAATTCAGACTCCGAGGTCTCTTCGTGGACTCTTCAAGGATCCTTGCG 1066
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 990 GCTTAAAAACCGAAATTCAGACTCCGAGGCCTCTCCGTGGACTCTTCAAGGATCCTTGCG 1049
Query 1067 TAAGACTAGCCGGAGAAATCTGCAAGGTTTTGTCCGAACTCGCTGCAAGCATTAGAAACC 1126
|| ||||||| |||||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct 1050 TACGACTAGCTGGAGAAATCTGCAAGGTTTTATCGGAACTTGCCGCAAGCATTAGAAACC 1109
Query 1127 GACGTCACTGCTCGCCGGAGATTCTTTCCGACAGTCTCCAAGTGGCATTACAAGATCTCA 1186
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1110 GACGTCACTGTTCCCCGGAGATTCTCTCCGACAGTCTCCAAGTGGCATTACAAGATCTCA 1169
Query 1187 ACACAGCCATTAAATCCCAACCTAAACTCTTCCTCGGCGCTAACCAAACCGGCAACGTTT 1246
|||||||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||| |
Sbjct 1170 ACACAGCCATTAAATCACAACCTAAACTCTTCCTCGGCTCTAGCCAAAACGGCAACGTGT 1229
Query 1247 CTCAAGGCAATAGCGGTAGACATAACCCTAACGTTGCAGTTTCACAACACATCAATAAAG 1306
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1230 CTCAAGGAAATAGCGGTAGACATAACCCCAACGTTGCAGTTTCACAACACATTAATAAAG 1289
Query 1307 ACACAAACGATGCTGCTTCACATCAAACCGTATCACGTCTTGAGCAAAACACTGGAACAC 1366
|||||||||| || ||||| |||||| | || ||||||||| |
Sbjct 1290 ACACAAACGAGGCCGCTTC----------GTATCA-------A--AA--CACTGGAACGC 1328
Query 1367 CACGCGGGGAACGCTTGTCACGTTTTGGACCAAACGTCTCGTTTTCTAGATTGAGGGCTG 1426
|||| || |||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1329 CACGTGGTGAACGCATGTCACGTTTTGGACCAAACGTTTCGTTTTCTAGATTGAGGGCTG 1388
Query 1427 ATACGTTAGAACGGAGATCCGCTGCAGCGATTAACGAGAGGAAGATCCTGAGGCAACAGT 1486
||||||||||||| ||||| || ||||||| |||||| || ||||| ||||||||||| |
Sbjct 1389 ATACGTTAGAACGAAGATCGGCGGCAGCGACTAACGAAAGAAAGATTCTGAGGCAACAAT 1448
Query 1487 TGAGCAAGATTGTGGTGATGACGAGTCTTGAATTCTCTGAGGCGTTACCGTTTGCTGCGT 1546
|||||| |||||||||| ||||||||||||||||||| ||||||||||| ||||| || |
Sbjct 1449 TGAGCAGGATTGTGGTGTTGACGAGTCTTGAATTCTCGGAGGCGTTACCATTTGCGGCTT 1508
Query 1547 TTGCGTCACTTCTAGTGGAAATGGTTGCTAGGCTTGACAATGTGATAGAGGAAGTGGAGG 1606
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1509 TTGCGTCACTACTAGTGGAAATGGTTGCTAGGCTTGACAATGTGATTGAGGAAGTGGAGG 1568
Query 1607 AACTAGGAACGATTGCCTGCTTTAAGGAGTATGATAACAACGTTGATCAGAAGGATGTGG 1666
| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1569 AGCTAGGAACGATCGCCTGCTTTAAGGATTATGATAACAACGTTGATCAGAAGGATGTGG 1628
Query 1667 AGGTCCGAGTCGAGAAACCGGTTGATCTAGTGGTTGGCGTAGAGTGAAAATGCTGTTGCG 1726
|||| ||||||||||| |||| || |||||||||||||| |||||||||||| ||||||
Sbjct 1629 AGGTTCGAGTCGAGAAGCCGGCAGACCTAGTGGTTGGCGTGGAGTGAAAATGCGGTTGCG 1688
Query 1727 AACAGTTTTGGTTTGGACCATATCCATGTCGCTAGTAACCAACATCATGAT--CTTTAAA 1784
|||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||
Sbjct 1689 GACAGTTTTGGTTTGGACCATGTCCATGTCGCTAGTATTCAACATCATGATATCTTTAAA 1748
Query 1785 ACTATTTTTGGTACTACACCAATTGAGCTACATATTCCGGGTTATA 1830
|||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 1749 ACTATTTTTGGTACTATACCAATTGAACTACATATTCCGGATTATA 1794
Score = 122 bits (66), Expect = 9e-27
Identities = 76/81 (94%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 1831 ATCGAACTAATCGGTATGATGAGATTTGGCTTTATGGTTTGATTTGATTTGGTTTAGTTT 1890
||||||| ||| ||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1826 ATCGAACCAATAGGTATGATGAGGTTTGGCTTTTTGGTTTGATTTGATTTGGTTTAGTTT 1885
Query 1891 TGATGTGATCGATTCTCTTTT 1911
|||||||||| ||||||||||
Sbjct 1886 TGATGTGATCTATTCTCTTTT 1906
> AT4G17970.1 | Symbols: ALMT12, ATALMT12 | aluminum-activated,
malate transporter 12 | chr4:9975408-9977722 FORWARD LENGTH=1757
Length=1757
Score = 918 bits (497), Expect = 0.0
Identities = 909/1102 (82%), Gaps = 51/1102 (5%)
Strand=Plus/Plus
Query 151 AAGATCAAGAAGATT-CTAAAGAGTATATGGAAAGTTGGAAAAGATGATCCTAGGAGAGT 209
||||| ||||||||| | ||| || | ||||| || |||||||| ||||| ||||||||
Sbjct 159 AAGATTAAGAAGATTCCGAAA-AGGCTTTGGAATGTCGGAAAAGAAGATCCGAGGAGAGT 217
Query 210 GAAACATG-CTTTAAAAGTAGGAGTTTCTTTAACACTTGTGTCCTTATTGTATCTCATGG 268
|| ||||| | || |||||||| |||| || ||||| || || || | ||||||||||
Sbjct 218 GATACATGCCCTT-AAAGTAGGTCTTTCCTTGACACTCGTTTCTTTGCTATATCTCATGG 276
Query 269 AGCCTCTCTTCAAAGGCATTGGAAATAGTGCTATTTGGGCAGTCATGACCGTCGTGGTCG 328
|||||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||
Sbjct 277 AGCCTCTCTTCAAAGGCATTGGAAGCAATGCTATTTGGGCAGTCATGACTGTCGTCGTCG 336
Query 329 TCCTCGAGTTCTCTGCCGGTGCCACGTTGTGCAAAGGGCTTAATAGAGGATTAGGGACAC 388
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 337 TCCTCGAGTTCTCTGCCGGTGCAACGTTGTGCAAAGGGCTTAATAGAGGATTAGGGACAC 396
Query 389 TAATTGCTGGATCTTTGGCATTTTTCATCGAATTTGTCGCTAATGATTCCGGCAAGATT- 447
||||||| |||||||||||||||||||| || ||||| ||||||||||||||||| | |
Sbjct 397 TAATTGCGGGATCTTTGGCATTTTTCATTGAGTTTGTAGCTAATGATTCCGGCAA-AGTC 455
Query 448 -TTCCGAGCTATTTTCATTGGCGCTGCAGTTTTCATAATCGGAGCG-CTGATAACCTATT 505
||| ||||||| ||||||||| |||| ||||| || || |||||| ||| || | |||
Sbjct 456 CTTC-GAGCTATCTTCATTGGCACTGCTGTTTTTATCATTGGAGCGGCTGCTA-CTTATA 513
Query 506 TGAGATTTATTCCATACATAAAAAAGAACTACGATTACGGCATGCT-T-ATATTTCTCTT 563
| |||||||| ||||||||||| ||||| ||||||||||| || | | |||||||||||
Sbjct 514 TAAGATTTATACCATACATAAAGAAGAATTACGATTACGG--TGTTGTGATATTTCTCTT 571
Query 564 GACGTTCAATCTAATAACAGTGTCGAGTTATAGAGTTGATACG-GTGATTAAA-ATTGCA 621
|||||||||||| ||||| ||||| || ||| |||| |||| | ||||| ||| || |||
Sbjct 572 GACGTTCAATCTTATAACGGTGTCAAGCTATCGAGTAGATA-GTGTGAT-AAACATAGCA 629
Query 622 CATGAGAGATTCTATACTATAGCCATGGGT-GTTGGCATTTGCCTACTCATGAGCCTT-T 679
|| || |||||||| ||||||||| | ||| | || || || || ||||||||||| |
Sbjct 630 CACGATAGATTCTACACTATAGCCGTTGGTTGC-GGAATCTGTCTTTTCATGAGCCTTCT 688
Query 680 TGGTTTTTCCTATTTGGTCTGGTGAGGACCTTCACAA-ATCCACCGTCGCTAAGTTCCAA 738
|| |||||||||||||||||||||| || || ||||| | ||||||| | ||| |||||
Sbjct 689 TG-TTTTTCCTATTTGGTCTGGTGAAGATCTACACAAGA-CCACCGTTGGTAAACTCCAA 746
Query 739 GGCCTCTCTTATTCCATTGAAGCATGTGTGAATGAGTACTTTGAAGAGGAGGAGAAAAAC 798
||||||||| || || |||||||||||| ||||||||||||| ||| | ||||||
Sbjct 747 GGCCTCTCTCGCTCTATAGAAGCATGTGTGGATGAGTACTTTGAGGAGAAAGAGAAA--- 803
Query 799 GAAGAAACATCAGATTTATCAGAAGACACTATCTAT-AACGGATAT-AAGACTGTTTTGG 856
||| ||| | |||||| | | |||||| ||||| || || ||| ||| |||||||||
Sbjct 804 GAA-AAA-A-CAGATTCA--A-AAGACAGAATCTACGAAGGG-TATCAAG-CTGTTTTGG 855
Query 857 ATTCCAAATCCGCCGATGAAGCACTTGCAATGTATGCAAGTTGGGAGCCAAGACACACAA 916
|||| ||||| | || ||| |||||||| | ||||||| |||||| |||||||||||
Sbjct 856 ATTCTAAATCTACTGACGAAACACTTGCATTATATGCAAATTGGGAACCAAGACACACTC 915
Query 917 GACATTGTCATAGATTTCCATGGAAACATTATGTTAAAGTTGGATCTGTTCTTCGTCTGT 976
|| |||||||||||||||||| |||| ||||||||||||||| |||||||||||| |
Sbjct 916 TACGTTGTCATAGATTTCCATGTCAACAATATGTTAAAGTTGGAGCTGTTCTTCGTCAAT 975
Query 977 TTGGTTACACTGTTGTTGCTCTTCATGGTTGCTTAAAAACCGAAATTCAGACTCCGAGGT 1036
||||||||||||||||||||||||| ||||||||| |||| || ||||| ||||| || |
Sbjct 976 TTGGTTACACTGTTGTTGCTCTTCACGGTTGCTTACAAACTGAGATTCAAACTCCAAGAT 1035
Query 1037 CTC-TTCGTG-GACTCTTCAAGGATCCTTGCGTAAGACTAGCCGGAGAAATCTGCAAGGT 1094
| | |||| | | || || || |||||||| |||||| ||||||||||| | ||||| |
Sbjct 1036 C-CGTTCGCGCG-CTTTTTAAAGATCCTTGTGTAAGATTAGCCGGAGAAGTATGCAAAGC 1093
Query 1095 TTTGTCCGAACTCGCTGCA-AGCAT-TAGAAACCGAC-GTCACTGCTCGCCGGAGATTCT 1151
|||| | |||||||| | | ||||| | ||||| || |||| || || |||||||||||
Sbjct 1094 TTTGACGGAACTCGCAG-ATAGCATCTC-AAACC-ACCGTCATTGTTCACCGGAGATTCT 1150
Query 1152 TTCCGA-CAGTCTCCAAGTGGCA-TTACAAGATCTCAACACAGCCATTAAATCCCAACCT 1209
||||| || |||||| |||||| || |||||||| || | || || || || || |||
Sbjct 1151 ATCCGATCA-TCTCCACGTGGCACTT-CAAGATCTTAATTCCGCTATCAAGTCTCAGCCT 1208
Query 1210 AAACTCTTCCTCGGCGCTAACC 1231
||||||||||| ||| ||||||
Sbjct 1209 AAACTCTTCCTTGGCTCTAACC 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94628027325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5