BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494319
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46590.1 | Symbols: anac096, NAC096 | NAC domain containing ... 1375 0.0
> AT5G46590.1 | Symbols: anac096, NAC096 | NAC domain containing
protein 96 | chr5:18905325-18906848 FORWARD LENGTH=1270
Length=1270
Score = 1375 bits (744), Expect = 0.0
Identities = 847/898 (94%), Gaps = 2/898 (0%)
Strand=Plus/Plus
Query 290 TTGCAAATGGGAAGTTCATGTTTACCTCCAGGATTCCGGTTTCATCCTACCGATGAAGAA 349
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 349 TTGCAAATGGGAAGTTCATGTTTACCTCCAGGGTTCCGGTTTCATCCTACGGATGAAGAA 408
Query 350 CTCATAGACTATTACTTGAAAAGAAAAGTCGAAGGTCTCGAGATCGAGCTTGAAGTCATT 409
||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 409 CTCATCGAATATTACTTGAAAAGAAAAGTCGAAGGTCTCGAGATTGAGCTTGAAGTCATT 468
Query 410 CCGGTTATCGATCTTTATAGTTTTGATCCTTGGGAGTTACCAGACAAGTCATTTCTCCCA 469
|| || ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 469 CCCGTCATCGATCTTTATAGTTTCGATCCTTGGGAGTTACCAGACAAGTCGTTTCTCCCA 528
Query 470 AACCGGGACATGGAATGGTTCTTCTTCTGTTCAAGAGACAAAAAATATCCTAATGGTTTC 529
||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct 529 AACCGGGACATGGAATGGTACTTCTTCTGCTCAAGGGACAAAAAATATCCTAATGGTTTT 588
Query 530 CGTACAAACCGAGGAACAAAGGCTGGTTACTGGAAAGCAACCGGAAAAGATCGGAAAATT 589
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 589 CGTACAAATCGAGGAACAAAGGCTGGTTATTGGAAAGCAACCGGAAAAGATCGAAAAATT 648
Query 590 ACTTCTCGTTCATCTTCTATAATTGGCTATAGAAAAACTCTAGTATTCTACAAAGGTCGT 649
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 649 ACTTCTCGTTCATCTTCTATAATTGGTTATAGAAAAACTCTAGTTTTCTACAAAGGCCGT 708
Query 650 GCCCCGTTAGGCGATAGAACCAATTGGATAATGCATGAATATCGACTGTGCGACGATGAT 709
||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 709 GCCCCGTTAGGCGATAGAAGCAATTGGATCATGCATGAATATCGACTATGCGATGATGAT 768
Query 710 TCATCACAAGGATCACAAAATTTGAAGGGAGCTTTTGTATTATGTCGTGTTGCTATGAAG 769
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 769 ACATCACAAGGATCACAAAATTTAAAGGGAGCTTTTGTGTTATGTCGTGTTGCTATGAAG 828
Query 770 AATGAAATCAAAACAAATTCCAAAATCCGAAAAATTCCAAGCGAGCAAACACTTGGATCC 829
||||| |||||||| ||| | |||||||||||||||||||||||||||||| | |||||
Sbjct 829 AATGAGATCAAAACTAATACGAAAATCCGAAAAATTCCAAGCGAGCAAACAATCGGATCA 888
Query 830 GGAGAAAGCTCTGGTTTTTCAAGCCGAGTAACATCTCCTAGTCGCGATGAAACAATGCCG 889
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 889 GGAGAAAGCTCGGGTTTATCAAGCCGAGTAACGTCTCCTAGTCGCGATGAAACAATGCCG 948
Query 890 TTTCACTCATTTGTCAATCCTGTATCTACTGAAACTGACTCTTCCAACATTTGGATTTCA 949
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 949 TTTCACTCATTTGCCAATCCTGTATCTACTGAAACTGATTCTTCCAACATTTGGATTTCA 1008
Query 950 CCTGACTTCATCCTCGATTCTTCAAAGGACTATCCTCAAATCCAAGATGTTGCATCTCAG 1009
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1009 CCTGAATTCATCCTCGATTCTTCAAAGGACTATCCTCAAATCCAAGATGTCGCATCTCAG 1068
Query 1010 TACTTCCAACAAGACTTTGATTTTCCGATCATCGGTAACCAAACCATGGA-TTATTCAGC 1068
| ||||||||||||||||||||||||||||||||||||||||| |||||| || | ||||
Sbjct 1069 TGCTTCCAACAAGACTTTGATTTTCCGATCATCGGTAACCAAAACATGGAGTT-TCCAGC 1127
Query 1069 CAGTACAAGCTTGGATCAGAACATGGATGAGTCTATGCAAACCAGTTATTGGACAAATTA 1128
||||||||||| ||||||||||||||||||| |||||||| | ||||||||||||||||
Sbjct 1128 GAGTACAAGCTTAGATCAGAACATGGATGAGTTTATGCAAAACGGTTATTGGACAAATTA 1187
Query 1129 TGGATACGATCAAACCGGTTTATTCGGTTACTCAGATTTCTCCTAAACGGAAGTATTT 1186
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1188 TGGATACGATCAAACCGGTTTATTCGGTTACTCAGATTTCTCCTAGACGGAAGTATTT 1245
Score = 398 bits (215), Expect = 8e-110
Identities = 275/302 (91%), Gaps = 12/302 (4%)
Strand=Plus/Plus
Query 1 GCTAAGCACTTCTTGTTAGGAAAAATCATTCCTTAATCACTTTTGAAGCTTTCACACCAA 60
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1 GCTAAGCACTTCTTGTTAGGAAAAATCATTCCTTAATCACTCTCGAAGCTTTCACACCAA 60
Query 61 TATCAC-T--TT-CT-TA-CTC-TCAttttaaag-ttttttagttac---tttttttt-t 108
||| || | || || | ||| ||||||||||| ||| |||||||| |||||||| |
Sbjct 61 TATTACTTCCTTACTACATCTCTTCATTTTAAAGATTTGTTAGTTACTTTTTTTTTTTGT 120
Query 109 tATTGTACGAAATAATTTGTTTTCTTTCAAACAATGTTCTTGTCACACAAAGAATACAAT 168
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 TATTGTACGAAATAATTTGTTTTCTTTCAGACAATGTTCTTGTCACACAAAGAATACAAT 180
Query 169 CGACTTGACTTGCAATTTTTTCTAAACAACAAATCGAGTGTCGAGAAAAGTTTCTATTTC 228
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 181 CGACTTGACTTGCAATTTTTTCTAAACAACAAATCCAGCATCGAGAAAAGTTTCTATTTT 240
Query 229 TGGATTTTCCAAATATTAACAGTTATAGCTTCGTGACGTAAATAAATATCAATATCAAGA 288
||||||||||||||||||||||||||||||||||||| | || ||||||| || ||||||
Sbjct 241 TGGATTTTCCAAATATTAACAGTTATAGCTTCGTGACTTCAAGAAATATCCATTTCAAGA 300
Query 289 TT 290
||
Sbjct 301 TT 302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58232632200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5